Wall clock time and date at job start Tue Mar 31 2020 22:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47102 * 2 1 4 4 C 1.53002 * 109.46998 * 240.00335 * 2 1 3 5 5 O 1.45200 * 109.47143 * 119.99874 * 2 1 3 6 6 C 1.34629 * 116.99616 * 60.00293 * 5 2 1 7 7 O 1.21514 * 120.00248 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00250 * 179.97438 * 6 5 2 9 9 C 1.47064 * 136.06124 * 179.97438 * 8 6 5 10 10 C 1.53499 * 88.04848 * 207.05651 * 9 8 6 11 11 O 1.42902 * 114.20426 * 87.55386 * 10 9 8 12 12 C 1.53002 * 114.20692 * 220.37351 * 10 9 8 13 13 C 1.50693 * 109.47114 * 297.94613 * 12 10 9 14 14 O 1.21289 * 120.00593 * 2.62182 * 13 12 10 15 15 N 1.34783 * 119.99843 * 182.62771 * 13 12 10 16 16 C 1.37100 * 120.00115 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99708 * 21.32202 * 16 15 13 18 18 C 1.38946 * 120.00177 * 201.32975 * 16 15 13 19 19 N 1.31411 * 119.99569 * 11.91916 * 18 16 15 20 20 Si 1.86796 * 120.00151 * 191.91929 * 18 16 15 21 21 H 1.48496 * 109.47132 * 59.99580 * 20 18 16 22 22 H 1.48505 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46853 * 299.99681 * 20 18 16 24 24 C 1.46492 * 119.99862 * 359.97438 * 15 13 12 25 25 C 1.47201 * 109.47191 * 83.70242 * 24 15 13 26 26 N 9.18800 * 134.08740 * 178.15717 * 5 1 2 27 27 C 1.47066 * 136.05149 * 359.94730 * 8 6 5 28 28 H 1.08996 * 109.47217 * 300.00148 * 1 2 3 29 29 H 1.09004 * 109.46819 * 59.99584 * 1 2 3 30 30 H 1.08992 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47096 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47269 * 300.00422 * 3 2 1 33 33 H 1.09001 * 109.46930 * 60.00249 * 3 2 1 34 34 H 1.08992 * 109.46985 * 299.99598 * 4 2 1 35 35 H 1.08994 * 109.47205 * 60.00307 * 4 2 1 36 36 H 1.09005 * 109.46952 * 179.97438 * 4 2 1 37 37 H 1.08997 * 113.46983 * 321.87006 * 9 8 6 38 38 H 1.09003 * 113.46572 * 92.25315 * 9 8 6 39 39 H 0.96698 * 114.00083 * 175.43404 * 11 10 9 40 40 H 1.08995 * 109.47004 * 57.94576 * 12 10 9 41 41 H 1.09000 * 109.47033 * 177.94167 * 12 10 9 42 42 H 0.97007 * 120.00059 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47419 * 203.70406 * 24 15 13 44 44 H 1.09004 * 109.47694 * 323.70035 * 24 15 13 45 45 H 1.09004 * 113.47026 * 267.69148 * 27 8 6 46 46 H 1.08998 * 113.46751 * 38.07977 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6657 2.4166 9 6 1.8960 -4.0344 2.9263 10 6 2.1059 -3.4777 4.3413 11 8 0.9106 -3.0118 4.9708 12 6 2.9618 -4.3675 5.2449 13 6 2.2780 -5.6970 5.4341 14 8 1.2347 -5.9294 4.8609 15 7 2.8257 -6.6278 6.2404 16 6 2.2039 -7.8376 6.4121 17 1 1.4953 -8.1896 5.6770 18 6 2.4852 -8.6106 7.5318 19 7 3.1575 -8.0931 8.5354 20 14 1.9078 -10.3854 7.6107 21 1 2.5053 -11.1506 6.4871 22 1 2.3326 -10.9873 8.9001 23 1 0.4270 -10.4291 7.5074 24 6 4.0861 -6.3473 6.9324 25 6 3.8103 -5.6011 8.1709 26 7 3.5929 -5.0249 9.1283 27 6 2.8939 -2.3867 3.6010 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 0.8963 -4.4364 2.7618 38 1 2.6828 -4.7183 2.6078 39 1 1.0338 -2.7266 5.8865 40 1 3.9369 -4.5229 4.7834 41 1 3.0911 -3.8843 6.2134 42 1 3.3543 -8.6329 9.3170 43 1 4.5832 -7.2861 7.1768 44 1 4.7311 -5.7524 6.2857 45 1 3.9472 -2.6312 3.4633 46 1 2.7432 -1.3875 4.0097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:42 Heat of formation + Delta-G solvation = -99.111058 kcal Electronic energy + Delta-G solvation = -30275.930635 eV Core-core repulsion = 25974.723071 eV Total energy + Delta-G solvation = -4301.207564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11855 -41.14054 -39.98776 -37.84147 -37.40242 -36.30242 -36.00464 -34.99056 -33.73291 -32.00809 -29.24570 -28.67118 -28.37519 -28.28941 -27.15328 -26.28518 -23.31617 -21.79249 -20.83520 -20.33347 -19.65382 -18.78555 -18.27515 -17.89409 -17.66951 -17.54502 -17.26994 -16.40459 -16.25447 -16.16561 -15.73128 -15.62781 -15.13017 -14.97002 -14.76408 -14.61499 -14.50593 -14.04553 -13.97090 -13.70685 -13.36100 -13.32315 -13.11492 -13.05845 -12.94082 -12.90415 -12.86762 -12.76887 -12.67223 -12.49526 -12.39307 -12.27986 -12.15158 -12.00314 -11.78764 -11.40380 -11.15079 -11.04607 -10.92148 -10.28207 -9.87083 -9.81602 -8.32270 -5.93810 0.93395 1.43714 1.49434 1.56367 1.73326 1.91304 2.14544 2.34271 2.39991 2.73131 2.92184 3.09566 3.12144 3.47225 3.69324 3.73552 3.75645 3.80159 3.94225 3.96523 4.17999 4.26565 4.47006 4.53620 4.60754 4.61252 4.63246 4.72816 4.75669 4.76554 4.81119 4.82958 4.87976 4.91534 4.93401 5.10296 5.12828 5.27787 5.33965 5.46964 5.52598 6.12102 6.47935 6.63659 6.80133 7.11895 7.20955 7.22514 7.44695 8.02133 8.69132 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.002499 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.284376 B =11202.113070 C =11881.041072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.121 3.879 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.363 6.363 6 C 0.674 3.326 7 O -0.601 6.601 8 N -0.637 5.637 9 C 0.143 3.857 10 C 0.123 3.877 11 O -0.549 6.549 12 C -0.141 4.141 13 C 0.453 3.547 14 O -0.602 6.602 15 N -0.460 5.460 16 C -0.327 4.327 17 H 0.079 0.921 18 C 0.004 3.996 19 N -0.899 5.899 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.288 1.288 24 C 0.221 3.779 25 C 0.260 3.740 26 N -0.515 5.515 27 C 0.093 3.907 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.119 0.881 39 H 0.392 0.608 40 H 0.152 0.848 41 H 0.110 0.890 42 H 0.271 0.729 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.139 0.861 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 15.662 -12.861 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.085 3.915 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.278 6.278 6 C 0.431 3.569 7 O -0.493 6.493 8 N -0.379 5.379 9 C 0.022 3.978 10 C 0.080 3.920 11 O -0.357 6.357 12 C -0.181 4.181 13 C 0.243 3.757 14 O -0.486 6.486 15 N -0.181 5.181 16 C -0.455 4.455 17 H 0.097 0.903 18 C -0.197 4.197 19 N -0.539 5.539 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.215 1.215 24 C 0.095 3.905 25 C -0.057 4.057 26 N -0.196 5.196 27 C -0.029 4.029 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.242 0.758 40 H 0.170 0.830 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.883 16.210 -12.636 21.675 hybrid contribution -0.725 -1.585 0.681 1.871 sum 6.158 14.626 -11.955 19.868 Atomic orbital electron populations 1.22482 0.94533 1.03236 1.03557 1.22496 0.94349 0.93058 0.81601 1.21868 1.02602 0.90068 1.04350 1.22459 1.01824 1.01924 0.97320 1.86304 1.71415 1.22490 1.47593 1.17411 0.78566 0.80771 0.80135 1.90880 1.43105 1.71491 1.43823 1.48156 1.53399 1.14850 1.21466 1.23137 1.03022 0.82659 0.89024 1.21947 0.85652 0.93397 0.90999 1.86540 1.32217 1.85124 1.31811 1.22194 1.01402 0.92006 1.02519 1.20942 0.85720 0.86123 0.82872 1.90606 1.25640 1.80426 1.51940 1.43763 1.20522 1.13347 1.40492 1.19533 1.24834 0.94566 1.06565 0.90320 1.25778 0.97183 1.03103 0.93686 1.69804 1.40864 1.37219 1.06055 0.85158 0.77887 0.78632 0.77666 1.18655 1.20675 1.21474 1.19145 0.87033 1.00141 0.84224 1.29952 0.91513 0.89553 0.94673 1.81032 1.09456 1.16487 1.12592 1.24038 0.97172 1.00942 0.80762 0.92321 0.88626 0.92798 0.90798 0.87684 0.91390 0.92597 0.88774 0.91515 0.92983 0.86284 0.75760 0.83024 0.87198 0.91857 0.85884 0.83728 0.84353 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.98 8.37 71.98 0.60 -3.38 16 2 C 0.12 2.53 1.13 -10.79 -0.01 2.52 16 3 C -0.13 -1.70 8.85 71.98 0.64 -1.06 16 4 C -0.18 -3.56 8.37 71.98 0.60 -2.96 16 5 O -0.36 -9.74 9.91 -55.38 -0.55 -10.29 16 6 C 0.67 21.80 8.26 129.79 1.07 22.87 16 7 O -0.60 -22.87 12.66 19.80 0.25 -22.62 16 8 N -0.64 -18.43 3.69 -988.61 -3.65 -22.08 16 9 C 0.14 4.40 6.68 83.18 0.56 4.95 16 10 C 0.12 3.18 1.16 -10.42 -0.01 3.17 16 11 O -0.55 -17.16 13.43 -148.85 -2.00 -19.16 16 12 C -0.14 -3.32 3.96 29.85 0.12 -3.20 16 13 C 0.45 17.37 7.38 87.65 0.65 18.02 16 14 O -0.60 -29.02 14.51 -2.93 -0.04 -29.06 16 15 N -0.46 -18.83 2.60 -645.43 -1.68 -20.51 16 16 C -0.33 -15.96 9.31 84.04 0.78 -15.17 16 17 H 0.08 4.20 7.39 -2.91 -0.02 4.18 16 18 C 0.00 0.17 5.08 84.93 0.43 0.60 16 19 N -0.90 -42.58 9.11 21.66 0.20 -42.39 16 20 Si 0.98 39.61 29.57 68.60 2.03 41.64 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 22 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 24 C 0.22 7.16 4.90 84.58 0.41 7.57 16 25 C 0.26 9.86 12.80 89.41 1.14 11.01 16 26 N -0.51 -21.79 18.55 20.04 0.37 -21.42 16 27 C 0.09 1.79 8.08 83.22 0.67 2.46 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.59 5.88 -2.39 -0.01 1.58 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.05 2.07 8.01 -2.39 -0.02 2.06 16 38 H 0.12 3.10 8.10 -2.39 -0.02 3.08 16 39 H 0.39 9.17 8.99 -74.06 -0.67 8.51 16 40 H 0.15 2.07 7.34 -2.39 -0.02 2.05 16 41 H 0.11 2.31 7.34 -2.39 -0.02 2.29 16 42 H 0.27 12.68 8.31 -92.70 -0.77 11.91 16 43 H 0.12 4.33 6.39 -2.39 -0.02 4.32 16 44 H 0.15 2.77 6.78 -2.38 -0.02 2.75 16 45 H 0.14 1.54 7.96 -2.38 -0.02 1.52 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -77.64 383.19 2.94 -74.70 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.36 Total: 23.80 kcal Atomic # 6 Polarization: 39.73 SS G_CDS: 7.66 Total: 47.39 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -4.76 Total: -106.39 kcal Atomic # 8 Polarization: -78.79 SS G_CDS: -2.34 Total: -81.13 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -77.64 2.94 -74.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.413 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds