Wall clock time and date at job start Wed Apr 1 2020 00:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99560 * 2 1 4 4 C 1.53000 * 109.46784 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47154 * 60.00142 * 4 3 2 6 6 N 1.46495 * 109.47129 * 179.97438 * 4 3 2 7 7 C 1.34782 * 119.99942 * 186.92673 * 6 4 3 8 8 O 1.21591 * 120.00126 * 355.73135 * 7 6 4 9 9 N 1.34779 * 119.99797 * 175.73099 * 7 6 4 10 10 C 1.46965 * 120.59170 * 184.90217 * 9 7 6 11 11 C 1.53378 * 108.63013 * 235.24821 * 10 9 7 12 12 N 1.46961 * 108.63354 * 310.57310 * 11 10 9 13 13 C 1.36937 * 120.59385 * 235.20422 * 12 11 10 14 14 H 1.07998 * 120.00144 * 147.70649 * 13 12 11 15 15 C 1.38808 * 119.99970 * 327.43847 * 13 12 11 16 16 N 1.31622 * 120.00328 * 349.46077 * 15 13 12 17 17 Si 1.86803 * 120.00123 * 169.45929 * 15 13 12 18 18 H 1.48503 * 109.46692 * 60.00369 * 17 15 13 19 19 H 1.48497 * 109.47316 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47247 * 300.00146 * 17 15 13 21 21 C 1.46965 * 118.81169 * 55.48278 * 12 11 10 22 22 C 1.46961 * 120.59497 * 4.91923 * 9 7 6 23 23 C 1.52999 * 109.47275 * 300.00368 * 4 3 2 24 24 F 1.39896 * 109.46902 * 301.82068 * 23 4 3 25 25 F 1.39900 * 109.47271 * 61.82053 * 23 4 3 26 26 F 1.39903 * 109.47104 * 181.82422 * 23 4 3 27 27 H 1.08996 * 109.47279 * 60.00024 * 1 2 3 28 28 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47283 * 299.99829 * 1 2 3 30 30 H 1.08997 * 109.47436 * 60.00503 * 3 2 1 31 31 H 1.08993 * 109.47185 * 299.99817 * 3 2 1 32 32 H 1.08997 * 109.47656 * 180.02562 * 5 4 3 33 33 H 1.09009 * 109.47109 * 300.00053 * 5 4 3 34 34 H 1.09000 * 109.47647 * 59.99630 * 5 4 3 35 35 H 0.96999 * 120.00483 * 6.92599 * 6 4 3 36 36 H 1.08993 * 109.61415 * 115.50113 * 10 9 7 37 37 H 1.09000 * 109.75411 * 355.07034 * 10 9 7 38 38 H 1.09005 * 109.60368 * 190.83214 * 11 10 9 39 39 H 1.08999 * 109.75193 * 70.40381 * 11 10 9 40 40 H 0.96998 * 120.00585 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.60982 * 64.26220 * 21 12 11 42 42 H 1.09001 * 109.60770 * 184.77223 * 21 12 11 43 43 H 1.08998 * 109.61317 * 244.49761 * 22 9 7 44 44 H 1.08998 * 109.60801 * 4.84063 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4257 -1.2502 6 7 4.1312 2.5230 -0.0013 7 6 5.4638 2.6674 -0.1427 8 8 6.1798 1.6859 -0.1917 9 7 6.0027 3.8997 -0.2297 10 6 7.4387 4.0713 -0.4912 11 6 8.0389 4.9401 0.6212 12 7 7.2011 6.1362 0.7865 13 6 7.7488 7.3882 0.6990 14 1 7.1644 8.2071 0.3062 15 6 9.0533 7.6061 1.1204 16 7 9.6931 6.6716 1.7911 17 14 9.9009 9.2257 0.7357 18 1 9.1355 10.3422 1.3463 19 1 11.2778 9.2081 1.2916 20 1 9.9631 9.4146 -0.7359 21 6 5.7661 5.9645 1.0535 22 6 5.1649 5.0958 -0.0644 23 6 3.9874 0.4252 1.2482 24 9 3.5393 1.0973 2.3904 25 9 3.4520 -0.8671 1.2274 26 9 5.3843 0.3509 1.2688 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 5.0729 0.3392 -1.2505 33 1 3.5430 -0.5701 -1.2502 34 1 3.6644 0.9667 -2.1400 35 1 3.5668 3.3054 0.1001 36 1 7.5791 4.5617 -1.4544 37 1 7.9302 3.0985 -0.5009 38 1 9.0511 5.2375 0.3471 39 1 8.0628 4.3783 1.5550 40 1 10.6045 6.8240 2.0859 41 1 5.6296 5.4723 2.0164 42 1 5.2771 6.9386 1.0651 43 1 5.1434 5.6591 -0.9972 44 1 4.1520 4.7982 0.2067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563240021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:11 Heat of formation + Delta-G solvation = -173.652684 kcal Electronic energy + Delta-G solvation = -32396.216900 eV Core-core repulsion = 27549.920228 eV Total energy + Delta-G solvation = -4846.296671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.79706 -47.35910 -47.13261 -40.33889 -38.59619 -37.11613 -35.57639 -34.00113 -31.70652 -31.07859 -29.85528 -27.83891 -26.90150 -26.35143 -25.65784 -23.76046 -22.90983 -21.55637 -20.46123 -19.36759 -18.55481 -18.11932 -17.93564 -17.72192 -16.72587 -16.38232 -16.03465 -15.63076 -15.35075 -14.80560 -14.79992 -14.30300 -14.10533 -13.86457 -13.77592 -13.71146 -13.57485 -13.51691 -13.39704 -13.30973 -13.25593 -13.20019 -12.76244 -12.61143 -12.19539 -11.99321 -11.82835 -11.69607 -11.23874 -11.15542 -10.85391 -10.74166 -10.61868 -10.23330 -10.15474 -10.01879 -9.87164 -9.55298 -9.30704 -8.58779 -8.22006 -6.65969 -5.84799 -3.37101 2.36188 2.79757 3.33098 3.34574 3.39672 3.40449 3.43683 3.85005 3.92702 4.12750 4.30749 4.42228 4.64354 4.73608 4.91373 4.96794 4.99411 5.10053 5.15600 5.31439 5.33440 5.51395 5.64591 5.67745 5.71202 5.77879 6.04444 6.16079 6.24372 6.29501 6.38843 6.49967 6.59836 6.67650 6.78832 7.09797 7.30168 7.60513 7.71073 8.12555 8.38869 8.79078 9.12567 9.72848 10.31898 11.22041 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.002963 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.154799 B = 9447.609119 C = 9752.773880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.057 3.943 4 C 0.164 3.836 5 C -0.167 4.167 6 N -0.741 5.741 7 C 0.703 3.297 8 O -0.571 6.571 9 N -0.608 5.608 10 C 0.105 3.895 11 C 0.159 3.841 12 N -0.590 5.590 13 C -0.261 4.261 14 H 0.065 0.935 15 C 0.008 3.992 16 N -0.901 5.901 17 Si 0.907 3.093 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.131 3.869 22 C 0.095 3.905 23 C 0.439 3.561 24 F -0.190 7.190 25 F -0.174 7.174 26 F -0.151 7.151 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.402 0.598 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.024 0.976 40 H 0.257 0.743 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 -10.891 -5.587 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.021 4.021 4 C 0.073 3.927 5 C -0.225 4.225 6 N -0.403 5.403 7 C 0.405 3.595 8 O -0.448 6.448 9 N -0.344 5.344 10 C -0.019 4.019 11 C 0.032 3.968 12 N -0.313 5.313 13 C -0.390 4.390 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.545 5.545 17 Si 0.736 3.264 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.209 1.209 21 C 0.004 3.996 22 C -0.031 4.031 23 C 0.383 3.617 24 F -0.172 7.172 25 F -0.156 7.156 26 F -0.132 7.132 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.241 0.759 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.759 -11.750 -5.536 22.002 hybrid contribution -0.083 1.466 0.300 1.499 sum -17.842 -10.284 -5.235 21.248 Atomic orbital electron populations 1.22804 0.80023 1.03317 1.00250 1.87958 1.20337 1.25362 1.95493 1.22569 0.89964 0.86849 1.02732 1.20923 0.93159 0.84527 0.94053 1.22296 1.05898 1.00351 0.93939 1.45118 1.07485 1.06451 1.81247 1.15807 0.81082 0.84408 0.78233 1.90921 1.59595 1.36760 1.57490 1.47258 1.10437 1.03093 1.73645 1.22445 0.77808 1.01295 1.00335 1.21213 0.96222 0.85852 0.93468 1.43929 1.02142 1.02693 1.82522 1.19111 0.97205 0.86723 1.36004 0.91728 1.25238 0.99052 0.97636 0.97262 1.69950 1.12281 1.33606 1.38628 0.86315 0.78647 0.83302 0.78086 1.20833 1.21547 1.20870 1.21359 0.87587 0.97037 0.93665 1.22359 0.92227 0.87167 1.01318 1.20954 0.76938 0.78418 0.85430 1.93139 1.89314 1.80366 1.54341 1.93184 1.86210 1.39567 1.96602 1.93384 1.27337 1.96023 1.96442 0.93721 0.89048 0.93727 0.91385 0.90473 0.88064 0.90047 0.90879 0.75928 0.92308 0.89872 0.88255 0.95760 0.93298 0.95876 0.91522 0.91436 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.60 8.31 -35.23 -0.29 -3.89 16 3 C 0.06 0.50 4.79 37.16 0.18 0.68 16 4 C 0.16 2.01 0.64 -131.82 -0.08 1.92 16 5 C -0.17 -2.02 7.92 37.16 0.29 -1.73 16 6 N -0.74 -9.62 4.96 -52.42 -0.26 -9.88 16 7 C 0.70 12.02 7.55 -86.91 -0.66 11.36 16 8 O -0.57 -11.35 10.43 5.29 0.06 -11.29 16 9 N -0.61 -10.72 2.95 -177.94 -0.52 -11.24 16 10 C 0.10 2.07 6.59 -3.59 -0.02 2.05 16 11 C 0.16 3.76 5.45 -3.60 -0.02 3.74 16 12 N -0.59 -14.18 2.95 -171.76 -0.51 -14.69 16 13 C -0.26 -6.84 9.56 -15.06 -0.14 -6.98 16 14 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 15 C 0.01 0.20 5.04 -17.43 -0.09 0.12 16 16 N -0.90 -25.65 11.10 55.49 0.62 -25.03 16 17 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.13 2.54 6.70 -3.37 -0.02 2.52 16 22 C 0.09 1.45 6.58 -3.37 -0.02 1.43 16 23 C 0.44 6.60 2.33 37.16 0.09 6.69 16 24 F -0.19 -2.89 16.67 2.25 0.04 -2.85 16 25 F -0.17 -2.53 15.04 2.25 0.03 -2.50 16 26 F -0.15 -2.79 13.22 2.25 0.03 -2.76 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.55 7.76 -51.93 -0.40 0.15 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 1.53 5.65 -51.93 -0.29 1.23 16 33 H 0.08 0.92 7.30 -51.92 -0.38 0.54 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.16 5.95 -40.82 -0.24 3.91 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.66 7.00 -51.93 -0.36 1.30 16 38 H 0.10 2.59 6.10 -51.93 -0.32 2.28 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.68 5.61 -51.93 -0.29 0.39 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -32.06 353.43 -5.95 -38.01 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.05 Total: 1.68 kcal Atomic # 6 Polarization: 22.50 SS G_CDS: 0.61 Total: 23.11 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.67 Total: -60.85 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.24 Total: -15.18 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 0.10 Total: -8.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.06 -5.95 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563240021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.640 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds