Wall clock time and date at job start Wed Apr 1 2020 00:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99560 * 2 1 4 4 C 1.53000 * 109.46784 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47154 * 60.00142 * 4 3 2 6 6 N 1.46495 * 109.47129 * 179.97438 * 4 3 2 7 7 C 1.34782 * 119.99942 * 186.92673 * 6 4 3 8 8 O 1.21591 * 120.00126 * 355.73135 * 7 6 4 9 9 N 1.34779 * 119.99797 * 175.73099 * 7 6 4 10 10 C 1.46965 * 120.59170 * 184.90217 * 9 7 6 11 11 C 1.53378 * 108.63013 * 235.24821 * 10 9 7 12 12 N 1.46961 * 108.63354 * 310.57310 * 11 10 9 13 13 C 1.36937 * 120.59385 * 235.20422 * 12 11 10 14 14 H 1.07998 * 120.00144 * 147.70649 * 13 12 11 15 15 C 1.38808 * 119.99970 * 327.43847 * 13 12 11 16 16 N 1.31622 * 120.00328 * 349.46077 * 15 13 12 17 17 Si 1.86803 * 120.00123 * 169.45929 * 15 13 12 18 18 H 1.48503 * 109.46692 * 60.00369 * 17 15 13 19 19 H 1.48497 * 109.47316 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47247 * 300.00146 * 17 15 13 21 21 C 1.46965 * 118.81169 * 55.48278 * 12 11 10 22 22 C 1.46961 * 120.59497 * 4.91923 * 9 7 6 23 23 C 1.52999 * 109.47275 * 300.00368 * 4 3 2 24 24 F 1.39896 * 109.46902 * 301.82068 * 23 4 3 25 25 F 1.39900 * 109.47271 * 61.82053 * 23 4 3 26 26 F 1.39903 * 109.47104 * 181.82422 * 23 4 3 27 27 H 1.08996 * 109.47279 * 60.00024 * 1 2 3 28 28 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47283 * 299.99829 * 1 2 3 30 30 H 1.08997 * 109.47436 * 60.00503 * 3 2 1 31 31 H 1.08993 * 109.47185 * 299.99817 * 3 2 1 32 32 H 1.08997 * 109.47656 * 180.02562 * 5 4 3 33 33 H 1.09009 * 109.47109 * 300.00053 * 5 4 3 34 34 H 1.09000 * 109.47647 * 59.99630 * 5 4 3 35 35 H 0.96999 * 120.00483 * 6.92599 * 6 4 3 36 36 H 1.08993 * 109.61415 * 115.50113 * 10 9 7 37 37 H 1.09000 * 109.75411 * 355.07034 * 10 9 7 38 38 H 1.09005 * 109.60368 * 190.83214 * 11 10 9 39 39 H 1.08999 * 109.75193 * 70.40381 * 11 10 9 40 40 H 0.96998 * 120.00585 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.60982 * 64.26220 * 21 12 11 42 42 H 1.09001 * 109.60770 * 184.77223 * 21 12 11 43 43 H 1.08998 * 109.61317 * 244.49761 * 22 9 7 44 44 H 1.08998 * 109.60801 * 4.84063 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4257 -1.2502 6 7 4.1312 2.5230 -0.0013 7 6 5.4638 2.6674 -0.1427 8 8 6.1798 1.6859 -0.1917 9 7 6.0027 3.8997 -0.2297 10 6 7.4387 4.0713 -0.4912 11 6 8.0389 4.9401 0.6212 12 7 7.2011 6.1362 0.7865 13 6 7.7488 7.3882 0.6990 14 1 7.1644 8.2071 0.3062 15 6 9.0533 7.6061 1.1204 16 7 9.6931 6.6716 1.7911 17 14 9.9009 9.2257 0.7357 18 1 9.1355 10.3422 1.3463 19 1 11.2778 9.2081 1.2916 20 1 9.9631 9.4146 -0.7359 21 6 5.7661 5.9645 1.0535 22 6 5.1649 5.0958 -0.0644 23 6 3.9874 0.4252 1.2482 24 9 3.5393 1.0973 2.3904 25 9 3.4520 -0.8671 1.2274 26 9 5.3843 0.3509 1.2688 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 5.0729 0.3392 -1.2505 33 1 3.5430 -0.5701 -1.2502 34 1 3.6644 0.9667 -2.1400 35 1 3.5668 3.3054 0.1001 36 1 7.5791 4.5617 -1.4544 37 1 7.9302 3.0985 -0.5009 38 1 9.0511 5.2375 0.3471 39 1 8.0628 4.3783 1.5550 40 1 10.6045 6.8240 2.0859 41 1 5.6296 5.4723 2.0164 42 1 5.2771 6.9386 1.0651 43 1 5.1434 5.6591 -0.9972 44 1 4.1520 4.7982 0.2067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563240021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:10 Heat of formation + Delta-G solvation = -195.620068 kcal Electronic energy + Delta-G solvation = -32397.169477 eV Core-core repulsion = 27549.920228 eV Total energy + Delta-G solvation = -4847.249249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.99873 -48.54063 -48.40296 -41.61357 -39.46739 -38.50864 -36.71076 -35.68740 -33.26540 -32.62477 -31.34589 -28.57187 -28.50783 -27.32110 -26.46030 -25.48189 -24.48225 -22.89239 -21.77884 -20.76162 -19.82860 -19.38634 -19.22055 -18.86120 -18.15491 -17.42036 -16.86799 -16.84326 -16.58905 -16.34909 -16.06874 -15.46113 -15.42147 -15.33008 -15.24049 -15.03160 -14.96194 -14.91600 -14.74822 -14.62396 -14.56243 -14.25073 -14.08372 -13.47611 -13.38222 -13.14216 -12.97236 -12.76755 -12.64137 -12.57066 -12.45957 -12.28866 -12.07121 -12.00256 -11.87381 -11.65916 -10.95390 -10.71105 -10.59292 -10.49056 -9.72224 -8.58321 -7.85816 -5.41879 1.24305 1.49819 1.51680 1.58481 1.68442 2.10138 2.47743 2.55604 2.74815 2.82475 3.14396 3.30156 3.36573 3.61661 3.66032 3.80268 4.21181 4.25484 4.28694 4.33019 4.36564 4.50973 4.56400 4.59662 4.64287 4.69194 4.71637 4.84946 4.85801 4.94801 5.07146 5.16288 5.21514 5.27067 5.51057 5.62343 5.65294 5.90327 6.07442 6.39546 6.87115 7.12316 7.47206 7.80000 8.35328 9.18506 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.002963 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.154799 B = 9447.609119 C = 9752.773880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.061 3.939 4 C 0.166 3.834 5 C -0.161 4.161 6 N -0.723 5.723 7 C 0.701 3.299 8 O -0.601 6.601 9 N -0.615 5.615 10 C 0.123 3.877 11 C 0.171 3.829 12 N -0.608 5.608 13 C -0.264 4.264 14 H 0.076 0.924 15 C -0.050 4.050 16 N -0.939 5.939 17 Si 0.972 3.028 18 H -0.274 1.274 19 H -0.300 1.300 20 H -0.274 1.274 21 C 0.125 3.875 22 C 0.105 3.895 23 C 0.427 3.573 24 F -0.193 7.193 25 F -0.173 7.173 26 F -0.177 7.177 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.418 0.582 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.069 0.931 39 H -0.014 1.014 40 H 0.250 0.750 41 H 0.008 0.992 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.883 -9.969 -7.156 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.016 4.016 4 C 0.076 3.924 5 C -0.218 4.218 6 N -0.385 5.385 7 C 0.403 3.597 8 O -0.479 6.479 9 N -0.351 5.351 10 C -0.002 4.002 11 C 0.044 3.956 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.094 0.906 15 C -0.245 4.245 16 N -0.585 5.585 17 Si 0.800 3.200 18 H -0.199 1.199 19 H -0.226 1.226 20 H -0.200 1.200 21 C -0.001 4.001 22 C -0.019 4.019 23 C 0.371 3.629 24 F -0.175 7.175 25 F -0.155 7.155 26 F -0.159 7.159 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.259 0.741 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.004 0.996 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.099 -10.816 -7.112 24.753 hybrid contribution 0.841 1.095 0.858 1.626 sum -20.258 -9.720 -6.254 23.324 Atomic orbital electron populations 1.22993 0.78205 1.04209 1.01465 1.87922 1.22273 1.25759 1.95759 1.22615 0.86934 0.87196 1.04863 1.21112 0.95583 0.83417 0.92291 1.22216 1.03701 1.01176 0.94755 1.44860 1.06035 1.07623 1.79987 1.15931 0.82252 0.83629 0.77914 1.90926 1.60817 1.37728 1.58477 1.47222 1.09648 1.04210 1.73979 1.21986 0.79398 0.99900 0.98879 1.20880 0.95508 0.86208 0.92994 1.44186 1.04060 1.02011 1.82911 1.19529 0.97389 0.87741 1.34694 0.90611 1.26027 1.00044 1.00750 0.97720 1.70141 1.12156 1.35644 1.40542 0.85276 0.76931 0.79706 0.78079 1.19929 1.22617 1.19956 1.21574 0.85172 0.98768 0.94612 1.22363 0.93494 0.85742 1.00330 1.21548 0.75770 0.78951 0.86594 1.93125 1.89156 1.80355 1.54816 1.93177 1.85973 1.39662 1.96650 1.93332 1.29732 1.96188 1.96628 0.91885 0.88476 0.93068 0.90302 0.87199 0.91335 0.89490 0.88659 0.74055 0.91231 0.90659 0.91320 0.99617 0.94098 0.97378 0.89947 0.89886 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -6.46 8.31 -148.98 -1.24 -7.70 16 3 C 0.06 0.86 4.79 71.98 0.34 1.20 16 4 C 0.17 3.68 0.64 3.60 0.00 3.68 16 5 C -0.16 -3.59 7.92 71.98 0.57 -3.02 16 6 N -0.72 -16.69 4.96 -438.01 -2.17 -18.86 16 7 C 0.70 23.00 7.55 179.05 1.35 24.36 16 8 O -0.60 -23.99 10.43 -4.00 -0.04 -24.04 16 9 N -0.61 -20.73 2.95 -835.14 -2.46 -23.20 16 10 C 0.12 4.90 6.59 86.42 0.57 5.47 16 11 C 0.17 8.39 5.45 86.42 0.47 8.87 16 12 N -0.61 -29.28 2.95 -697.34 -2.06 -31.34 16 13 C -0.26 -13.75 9.56 84.03 0.80 -12.94 16 14 H 0.08 3.72 7.85 -2.91 -0.02 3.70 16 15 C -0.05 -2.72 5.04 84.86 0.43 -2.29 16 16 N -0.94 -55.44 11.10 21.65 0.24 -55.20 16 17 Si 0.97 43.57 29.57 68.60 2.03 45.59 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.12 4.64 6.70 86.56 0.58 5.22 16 22 C 0.10 2.87 6.58 86.57 0.57 3.44 16 23 C 0.43 12.50 2.33 71.98 0.17 12.67 16 24 F -0.19 -5.64 16.67 44.97 0.75 -4.89 16 25 F -0.17 -4.91 15.04 44.97 0.68 -4.24 16 26 F -0.18 -6.69 13.22 44.97 0.59 -6.10 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.08 0.95 7.76 -2.39 -0.02 0.93 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.07 2.04 5.65 -2.39 -0.01 2.02 16 33 H 0.09 1.83 7.30 -2.38 -0.02 1.81 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.42 6.77 5.95 -92.71 -0.55 6.21 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 3.10 7.00 -2.39 -0.02 3.08 16 38 H 0.07 3.78 6.10 -2.38 -0.01 3.76 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.11 1.92 5.61 -2.39 -0.01 1.90 16 Total: -1.00 -73.02 353.43 3.92 -69.11 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.49 Total: 12.71 kcal Atomic # 6 Polarization: 41.03 SS G_CDS: 7.11 Total: 48.14 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.45 Total: -128.59 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.28 Total: -31.73 kcal Atomic # 9 Polarization: -17.25 SS G_CDS: 2.02 Total: -15.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.02 3.92 -69.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563240021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.513 kcal (2) G-P(sol) polarization free energy of solvation -73.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds