Wall clock time and date at job start Wed Apr 1 2020 00:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00070 * 2 1 4 4 C 1.53004 * 109.46980 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46858 * 299.99999 * 4 3 2 6 6 N 1.46504 * 109.47149 * 180.02562 * 4 3 2 7 7 C 1.34770 * 120.00126 * 173.38515 * 6 4 3 8 8 O 1.21596 * 119.99969 * 4.45937 * 7 6 4 9 9 N 1.34782 * 120.00153 * 184.45811 * 7 6 4 10 10 C 1.46961 * 120.59010 * 354.58146 * 9 7 6 11 11 C 1.53815 * 108.39829 * 124.75818 * 10 9 7 12 12 N 1.46972 * 108.57986 * 49.63360 * 11 10 9 13 13 C 1.36931 * 120.59469 * 124.62358 * 12 11 10 14 14 H 1.07997 * 120.00153 * 214.54224 * 13 12 11 15 15 C 1.38813 * 120.00133 * 34.54422 * 13 12 11 16 16 N 1.31624 * 119.99517 * 6.15085 * 15 13 12 17 17 Si 1.86795 * 120.00497 * 186.15079 * 15 13 12 18 18 H 1.48501 * 109.47107 * 89.99667 * 17 15 13 19 19 H 1.48502 * 109.47512 * 210.00213 * 17 15 13 20 20 H 1.48498 * 109.46785 * 330.00007 * 17 15 13 21 21 C 1.46967 * 118.81177 * 304.65276 * 12 11 10 22 22 C 1.46959 * 120.59324 * 174.85999 * 9 7 6 23 23 C 1.52991 * 109.47467 * 60.00057 * 4 3 2 24 24 F 1.39900 * 109.47448 * 186.46004 * 23 4 3 25 25 F 1.39900 * 109.47351 * 306.46027 * 23 4 3 26 26 F 1.39905 * 109.47262 * 66.45475 * 23 4 3 27 27 H 1.08998 * 109.47627 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46991 * 300.00086 * 1 2 3 29 29 H 1.09007 * 109.46799 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.47412 * 59.99977 * 3 2 1 31 31 H 1.08999 * 109.47740 * 299.99764 * 3 2 1 32 32 H 1.09003 * 109.46931 * 299.99850 * 5 4 3 33 33 H 1.08993 * 109.47503 * 59.99958 * 5 4 3 34 34 H 1.09001 * 109.47061 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00124 * 353.38521 * 6 4 3 36 36 H 1.09004 * 109.61007 * 244.53641 * 10 9 7 37 37 H 1.08993 * 109.61446 * 5.05398 * 10 9 7 38 38 H 1.09000 * 109.73920 * 289.84999 * 11 10 9 39 39 H 1.08993 * 109.67491 * 169.38098 * 11 10 9 40 40 H 0.97007 * 119.99690 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.60689 * 295.48050 * 21 12 11 42 42 H 1.08997 * 109.75246 * 175.05381 * 21 12 11 43 43 H 1.09005 * 109.61363 * 354.94847 * 22 9 7 44 44 H 1.08999 * 109.61056 * 115.28639 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9874 0.4250 1.2483 6 7 4.1314 2.5229 0.0000 7 6 5.4647 2.6668 0.1340 8 8 6.1813 1.6852 0.1729 9 7 6.0038 3.8988 0.2249 10 6 5.1666 5.0954 0.0609 11 6 5.3384 5.9824 1.3058 12 7 6.7750 6.1530 1.5647 13 6 7.3229 7.4046 1.6561 14 1 8.3259 7.5825 1.2976 15 6 6.5890 8.4447 2.2097 16 7 5.4159 8.2045 2.7561 17 14 7.2662 10.1853 2.1791 18 1 6.8252 10.8663 0.9354 19 1 6.7620 10.9335 3.3587 20 1 8.7500 10.1399 2.2191 21 6 7.6132 4.9562 1.7230 22 6 7.4403 4.0693 0.4837 23 6 3.9865 0.4255 -1.2501 24 9 5.3630 0.1861 -1.1789 25 9 3.3045 -0.7936 -1.3268 26 9 3.7042 1.1899 -2.3874 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.6661 0.9658 2.1385 33 1 3.5440 -0.5707 1.2483 34 1 5.0740 0.3393 1.2481 35 1 3.5664 3.3055 -0.0961 36 1 5.4810 5.6429 -0.8277 37 1 4.1221 4.8004 -0.0386 38 1 4.8659 5.5063 2.1650 39 1 4.8805 6.9555 1.1290 40 1 4.9032 8.9313 3.1433 41 1 7.3025 4.4071 2.6120 42 1 8.6586 5.2489 1.8206 43 1 7.8978 3.0963 0.6635 44 1 7.9134 4.5425 -0.3767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563240022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:15 Heat of formation + Delta-G solvation = -175.697125 kcal Electronic energy + Delta-G solvation = -32379.636945 eV Core-core repulsion = 27533.251620 eV Total energy + Delta-G solvation = -4846.385325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.82533 -47.37895 -47.17158 -40.32794 -38.55409 -37.11020 -35.56571 -33.96653 -31.97865 -30.66291 -30.05111 -27.78516 -26.90255 -26.33732 -25.62256 -23.77190 -22.91426 -21.56426 -20.42812 -19.35636 -18.57398 -18.13985 -17.96035 -17.69171 -16.67292 -16.39996 -15.96496 -15.60154 -15.23461 -15.07662 -14.71248 -14.28298 -14.13858 -13.91772 -13.76813 -13.71286 -13.54285 -13.47451 -13.43795 -13.31235 -13.27106 -13.22448 -12.72952 -12.57725 -12.20166 -11.93679 -11.77341 -11.60956 -11.28224 -11.18250 -10.91781 -10.76673 -10.51563 -10.28490 -10.13994 -10.09073 -9.89305 -9.58627 -9.29664 -8.62119 -8.23043 -6.66360 -5.90447 -3.43672 2.39421 2.78743 3.30023 3.37249 3.38128 3.39801 3.42660 3.86462 3.91920 4.15317 4.34289 4.39215 4.64982 4.75990 4.97311 5.01185 5.06646 5.14732 5.21497 5.29512 5.36569 5.57738 5.69222 5.73528 5.83427 5.85480 6.07047 6.13348 6.20950 6.28394 6.32187 6.44209 6.65354 6.72195 6.87870 7.03721 7.25975 7.45268 7.68386 8.13002 8.36414 8.78240 9.09456 9.68455 10.28537 11.16610 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.003101 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.707762 B = 9027.712592 C = 9727.845214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.056 3.944 4 C 0.164 3.836 5 C -0.168 4.168 6 N -0.739 5.739 7 C 0.704 3.296 8 O -0.577 6.577 9 N -0.609 5.609 10 C 0.084 3.916 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.256 4.256 14 H 0.066 0.934 15 C 0.008 3.992 16 N -0.906 5.906 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.131 3.869 22 C 0.114 3.886 23 C 0.439 3.561 24 F -0.154 7.154 25 F -0.172 7.172 26 F -0.190 7.190 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 -13.793 -5.961 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.022 4.022 4 C 0.074 3.926 5 C -0.225 4.225 6 N -0.401 5.401 7 C 0.406 3.594 8 O -0.455 6.455 9 N -0.345 5.345 10 C -0.041 4.041 11 C 0.033 3.967 12 N -0.314 5.314 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.191 4.191 16 N -0.550 5.550 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.203 1.203 21 C 0.004 3.996 22 C -0.010 4.010 23 C 0.383 3.617 24 F -0.135 7.135 25 F -0.154 7.154 26 F -0.172 7.172 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.463 -14.528 -5.840 18.295 hybrid contribution -0.337 1.600 -0.306 1.664 sum -9.800 -12.928 -6.146 17.348 Atomic orbital electron populations 1.22802 0.80079 1.03250 1.00287 1.87958 1.20289 1.25327 1.95495 1.22566 0.89897 0.86845 1.02845 1.20938 0.93234 0.84510 0.93948 1.22297 1.05827 1.00267 0.94122 1.45099 1.07357 1.06543 1.81091 1.15799 0.81212 0.84323 0.78081 1.90918 1.59703 1.36840 1.57996 1.47226 1.10161 1.03551 1.73539 1.22709 0.92079 0.86713 1.02590 1.21266 0.86125 0.98472 0.90791 1.43879 1.03790 1.00959 1.82732 1.19192 1.00289 0.85326 1.33757 0.91672 1.25279 0.97511 0.99193 0.97123 1.69912 1.13045 1.31242 1.40766 0.86219 0.78708 0.84205 0.77175 1.21323 1.21599 1.20310 1.21349 0.96046 0.88612 0.93558 1.22131 0.78611 1.00797 0.99478 1.20943 0.76737 0.78511 0.85484 1.93341 1.29581 1.94415 1.96131 1.93199 1.79855 1.45780 1.96548 1.93136 1.93544 1.75818 1.54684 0.89094 0.93647 0.93797 0.90235 0.91544 0.90668 0.90172 0.88066 0.75666 0.91664 0.92345 0.95879 0.88109 0.93443 0.95844 0.91449 0.89784 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.37 -3.78 8.03 -35.23 -0.28 -4.06 16 3 C 0.06 0.54 4.85 37.16 0.18 0.72 16 4 C 0.16 2.08 0.64 -131.82 -0.08 2.00 16 5 C -0.17 -2.15 7.91 37.16 0.29 -1.86 16 6 N -0.74 -10.09 4.83 -52.41 -0.25 -10.34 16 7 C 0.70 12.07 7.67 -86.92 -0.67 11.40 16 8 O -0.58 -11.16 10.56 5.28 0.06 -11.10 16 9 N -0.61 -10.74 2.94 -177.94 -0.52 -11.27 16 10 C 0.08 1.43 6.62 -3.37 -0.02 1.41 16 11 C 0.16 3.47 5.46 -3.36 -0.02 3.45 16 12 N -0.59 -13.95 2.95 -171.76 -0.51 -14.46 16 13 C -0.26 -6.63 9.56 -15.06 -0.14 -6.78 16 14 H 0.07 1.67 7.84 -52.49 -0.41 1.26 16 15 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 16 N -0.91 -24.67 11.00 55.49 0.61 -24.06 16 17 Si 0.91 20.68 29.56 -169.99 -5.02 15.66 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.13 2.68 6.67 -3.59 -0.02 2.65 16 22 C 0.11 2.06 6.58 -3.60 -0.02 2.04 16 23 C 0.44 6.44 2.29 37.15 0.09 6.53 16 24 F -0.15 -2.68 13.30 2.25 0.03 -2.65 16 25 F -0.17 -2.44 14.99 2.25 0.03 -2.41 16 26 F -0.19 -2.80 16.86 2.25 0.04 -2.77 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.95 7.52 -51.93 -0.39 0.56 16 34 H 0.10 1.58 5.55 -51.93 -0.29 1.29 16 35 H 0.40 4.69 5.93 -40.82 -0.24 4.45 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.80 5.55 -51.93 -0.29 0.51 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 2.42 6.10 -51.93 -0.32 2.10 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.07 1.32 7.94 -51.93 -0.41 0.90 16 43 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -30.65 353.73 -5.96 -36.61 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.07 Total: 2.51 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 0.60 Total: 23.01 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.67 Total: -60.12 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.23 Total: -15.17 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.10 Total: -7.82 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.65 -5.96 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563240022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.087 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds