Wall clock time and date at job start Wed Apr 1 2020 00:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00070 * 2 1 4 4 C 1.53004 * 109.46980 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46858 * 299.99999 * 4 3 2 6 6 N 1.46504 * 109.47149 * 180.02562 * 4 3 2 7 7 C 1.34770 * 120.00126 * 173.38515 * 6 4 3 8 8 O 1.21596 * 119.99969 * 4.45937 * 7 6 4 9 9 N 1.34782 * 120.00153 * 184.45811 * 7 6 4 10 10 C 1.46961 * 120.59010 * 354.58146 * 9 7 6 11 11 C 1.53815 * 108.39829 * 124.75818 * 10 9 7 12 12 N 1.46972 * 108.57986 * 49.63360 * 11 10 9 13 13 C 1.36931 * 120.59469 * 124.62358 * 12 11 10 14 14 H 1.07997 * 120.00153 * 214.54224 * 13 12 11 15 15 C 1.38813 * 120.00133 * 34.54422 * 13 12 11 16 16 N 1.31624 * 119.99517 * 6.15085 * 15 13 12 17 17 Si 1.86795 * 120.00497 * 186.15079 * 15 13 12 18 18 H 1.48501 * 109.47107 * 89.99667 * 17 15 13 19 19 H 1.48502 * 109.47512 * 210.00213 * 17 15 13 20 20 H 1.48498 * 109.46785 * 330.00007 * 17 15 13 21 21 C 1.46967 * 118.81177 * 304.65276 * 12 11 10 22 22 C 1.46959 * 120.59324 * 174.85999 * 9 7 6 23 23 C 1.52991 * 109.47467 * 60.00057 * 4 3 2 24 24 F 1.39900 * 109.47448 * 186.46004 * 23 4 3 25 25 F 1.39900 * 109.47351 * 306.46027 * 23 4 3 26 26 F 1.39905 * 109.47262 * 66.45475 * 23 4 3 27 27 H 1.08998 * 109.47627 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46991 * 300.00086 * 1 2 3 29 29 H 1.09007 * 109.46799 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.47412 * 59.99977 * 3 2 1 31 31 H 1.08999 * 109.47740 * 299.99764 * 3 2 1 32 32 H 1.09003 * 109.46931 * 299.99850 * 5 4 3 33 33 H 1.08993 * 109.47503 * 59.99958 * 5 4 3 34 34 H 1.09001 * 109.47061 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00124 * 353.38521 * 6 4 3 36 36 H 1.09004 * 109.61007 * 244.53641 * 10 9 7 37 37 H 1.08993 * 109.61446 * 5.05398 * 10 9 7 38 38 H 1.09000 * 109.73920 * 289.84999 * 11 10 9 39 39 H 1.08993 * 109.67491 * 169.38098 * 11 10 9 40 40 H 0.97007 * 119.99690 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.60689 * 295.48050 * 21 12 11 42 42 H 1.08997 * 109.75246 * 175.05381 * 21 12 11 43 43 H 1.09005 * 109.61363 * 354.94847 * 22 9 7 44 44 H 1.08999 * 109.61056 * 115.28639 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9874 0.4250 1.2483 6 7 4.1314 2.5229 0.0000 7 6 5.4647 2.6668 0.1340 8 8 6.1813 1.6852 0.1729 9 7 6.0038 3.8988 0.2249 10 6 5.1666 5.0954 0.0609 11 6 5.3384 5.9824 1.3058 12 7 6.7750 6.1530 1.5647 13 6 7.3229 7.4046 1.6561 14 1 8.3259 7.5825 1.2976 15 6 6.5890 8.4447 2.2097 16 7 5.4159 8.2045 2.7561 17 14 7.2662 10.1853 2.1791 18 1 6.8252 10.8663 0.9354 19 1 6.7620 10.9335 3.3587 20 1 8.7500 10.1399 2.2191 21 6 7.6132 4.9562 1.7230 22 6 7.4403 4.0693 0.4837 23 6 3.9865 0.4255 -1.2501 24 9 5.3630 0.1861 -1.1789 25 9 3.3045 -0.7936 -1.3268 26 9 3.7042 1.1899 -2.3874 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.6661 0.9658 2.1385 33 1 3.5440 -0.5707 1.2483 34 1 5.0740 0.3393 1.2481 35 1 3.5664 3.3055 -0.0961 36 1 5.4810 5.6429 -0.8277 37 1 4.1221 4.8004 -0.0386 38 1 4.8659 5.5063 2.1650 39 1 4.8805 6.9555 1.1290 40 1 4.9032 8.9313 3.1433 41 1 7.3025 4.4071 2.6120 42 1 8.6586 5.2489 1.8206 43 1 7.8978 3.0963 0.6635 44 1 7.9134 4.5425 -0.3767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563240022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:14 Heat of formation + Delta-G solvation = -195.405354 kcal Electronic energy + Delta-G solvation = -32380.491558 eV Core-core repulsion = 27533.251620 eV Total energy + Delta-G solvation = -4847.239938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.98730 -48.52322 -48.38389 -41.62022 -39.47050 -38.50430 -36.72460 -35.63154 -33.52686 -32.19075 -31.53885 -28.56535 -28.51785 -27.32900 -26.45588 -25.47267 -24.46720 -22.91355 -21.72261 -20.75226 -19.84608 -19.39899 -19.22156 -18.82673 -18.11824 -17.42117 -16.98316 -16.73221 -16.50761 -16.40366 -16.17008 -15.44638 -15.42815 -15.24526 -15.22760 -15.00687 -14.95050 -14.89991 -14.77481 -14.62535 -14.52814 -14.27725 -14.04976 -13.46788 -13.37484 -13.18986 -12.99246 -12.76623 -12.70342 -12.56318 -12.45986 -12.20306 -12.07798 -11.99294 -11.90876 -11.63961 -11.00145 -10.72312 -10.56045 -10.50121 -9.72279 -8.53579 -7.86257 -5.43111 1.25527 1.49944 1.51745 1.59764 1.66448 2.11032 2.46736 2.53882 2.72124 2.81084 3.14753 3.29902 3.36679 3.63128 3.65724 3.79757 4.21172 4.26869 4.28645 4.31644 4.34839 4.53584 4.56464 4.58690 4.62842 4.67151 4.70076 4.76895 4.87496 4.93407 5.10311 5.15052 5.20885 5.28776 5.49250 5.65025 5.70032 5.89049 6.05608 6.42576 6.82907 7.15979 7.44949 7.80297 8.36099 9.17437 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.003101 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.707762 B = 9027.712592 C = 9727.845214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.060 3.940 4 C 0.165 3.835 5 C -0.161 4.161 6 N -0.727 5.727 7 C 0.703 3.297 8 O -0.598 6.598 9 N -0.615 5.615 10 C 0.099 3.901 11 C 0.167 3.833 12 N -0.609 5.609 13 C -0.266 4.266 14 H 0.065 0.935 15 C -0.040 4.040 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.282 1.282 19 H -0.296 1.296 20 H -0.272 1.272 21 C 0.134 3.866 22 C 0.125 3.875 23 C 0.433 3.567 24 F -0.174 7.174 25 F -0.170 7.170 26 F -0.191 7.191 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.416 0.584 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.003 0.997 39 H 0.076 0.924 40 H 0.252 0.748 41 H 0.011 0.989 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 -13.881 -6.653 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.017 4.017 4 C 0.074 3.926 5 C -0.219 4.219 6 N -0.388 5.388 7 C 0.404 3.596 8 O -0.478 6.478 9 N -0.351 5.351 10 C -0.025 4.025 11 C 0.041 3.959 12 N -0.333 5.333 13 C -0.396 4.396 14 H 0.083 0.917 15 C -0.236 4.236 16 N -0.577 5.577 17 Si 0.797 3.203 18 H -0.209 1.209 19 H -0.222 1.222 20 H -0.197 1.197 21 C 0.007 3.993 22 C 0.001 3.999 23 C 0.377 3.623 24 F -0.155 7.155 25 F -0.152 7.152 26 F -0.173 7.173 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.257 0.743 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.021 0.979 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.669 -14.636 -6.551 19.260 hybrid contribution 0.018 1.530 -0.083 1.533 sum -10.650 -13.105 -6.634 18.144 Atomic orbital electron populations 1.22995 0.78317 1.04257 1.01354 1.87923 1.22165 1.25508 1.95727 1.22586 0.87311 0.87242 1.04586 1.21097 0.95380 0.83432 0.92647 1.22208 1.03882 1.01099 0.94717 1.44937 1.06225 1.07621 1.80046 1.15908 0.82178 0.83644 0.77832 1.90922 1.60650 1.37409 1.58791 1.47231 1.09999 1.03956 1.73873 1.22485 0.94242 0.85828 0.99964 1.21079 0.84898 0.97909 0.92035 1.44141 1.04763 1.01202 1.83148 1.19464 1.00376 0.86507 1.33273 0.91731 1.25940 0.97884 1.02467 0.97274 1.70061 1.13991 1.31866 1.41757 0.85263 0.78220 0.80085 0.76773 1.20890 1.22217 1.19731 1.21378 0.95809 0.87828 0.94245 1.21914 0.79371 1.00303 0.98346 1.21292 0.75865 0.78861 0.86239 1.93300 1.31364 1.94590 1.96264 1.93199 1.79616 1.45756 1.96586 1.93129 1.93441 1.75781 1.54923 0.88243 0.92330 0.92941 0.88084 0.90177 0.89604 0.89329 0.90943 0.74314 0.91426 0.88543 0.97936 0.90623 0.93881 0.97090 0.91013 0.89409 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.39 -6.99 8.03 -148.98 -1.20 -8.18 16 3 C 0.06 0.98 4.85 71.98 0.35 1.33 16 4 C 0.16 3.85 0.64 3.60 0.00 3.85 16 5 C -0.16 -3.93 7.91 71.98 0.57 -3.36 16 6 N -0.73 -18.24 4.83 -438.00 -2.11 -20.36 16 7 C 0.70 23.11 7.67 179.05 1.37 24.48 16 8 O -0.60 -22.79 10.56 -4.02 -0.04 -22.83 16 9 N -0.61 -20.86 2.94 -835.14 -2.46 -23.32 16 10 C 0.10 3.21 6.62 86.57 0.57 3.79 16 11 C 0.17 7.21 5.46 86.56 0.47 7.69 16 12 N -0.61 -28.79 2.95 -697.32 -2.06 -30.84 16 13 C -0.27 -13.79 9.56 84.03 0.80 -12.99 16 14 H 0.07 3.29 7.84 -2.91 -0.02 3.26 16 15 C -0.04 -2.07 5.13 84.86 0.44 -1.64 16 16 N -0.93 -51.25 11.00 21.65 0.24 -51.01 16 17 Si 0.97 42.49 29.56 68.60 2.03 44.52 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 C 0.13 5.44 6.67 86.42 0.58 6.01 16 22 C 0.13 4.43 6.58 86.42 0.57 5.00 16 23 C 0.43 12.14 2.29 71.98 0.16 12.30 16 24 F -0.17 -6.00 13.30 44.97 0.60 -5.40 16 25 F -0.17 -4.60 14.99 44.97 0.67 -3.93 16 26 F -0.19 -5.31 16.86 44.97 0.76 -4.55 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.10 7.97 -2.39 -0.02 1.08 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.98 7.52 -2.39 -0.02 1.97 16 34 H 0.07 2.23 5.55 -2.39 -0.01 2.22 16 35 H 0.42 8.35 5.93 -92.71 -0.55 7.80 16 36 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.10 2.36 5.55 -2.39 -0.01 2.35 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.08 3.66 6.10 -2.39 -0.01 3.65 16 40 H 0.25 13.47 8.31 -92.70 -0.77 12.70 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.07 2.79 7.94 -2.39 -0.02 2.78 16 43 H 0.09 3.05 7.02 -2.38 -0.02 3.04 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -66.02 353.73 4.05 -61.97 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.49 Total: 15.94 kcal Atomic # 6 Polarization: 40.86 SS G_CDS: 7.14 Total: 47.99 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -6.39 Total: -125.53 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.24 Total: -31.01 kcal Atomic # 9 Polarization: -15.91 SS G_CDS: 2.03 Total: -13.88 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -66.02 4.05 -61.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563240022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.436 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds