Wall clock time and date at job start Wed Apr 1 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.52607 * 2 1 4 4 O 1.44674 * 110.71991 * 237.10584 * 2 1 3 5 5 C 1.44376 * 104.03557 * 203.21791 * 4 2 1 6 6 C 1.53000 * 110.20972 * 280.71879 * 5 4 2 7 7 C 1.52995 * 110.21269 * 158.81330 * 5 4 2 8 8 N 1.48013 * 105.65630 * 39.76265 * 5 4 2 9 9 C 1.48084 * 105.84411 * 335.36955 * 8 5 4 10 10 H 1.08993 * 110.39185 * 242.17366 * 9 8 5 11 11 C 1.53003 * 110.39155 * 119.89638 * 9 8 5 12 12 N 1.46497 * 109.46715 * 56.46090 * 11 9 8 13 13 C 1.34781 * 119.99949 * 180.02562 * 12 11 9 14 14 O 1.21589 * 119.99485 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00144 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99959 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.46913 * 324.99448 * 16 15 13 18 18 C 1.50705 * 109.46855 * 205.00108 * 16 15 13 19 19 H 1.07995 * 119.99946 * 274.93554 * 18 16 15 20 20 C 1.37872 * 120.00160 * 94.94247 * 18 16 15 21 21 N 1.31513 * 120.00176 * 184.87543 * 20 18 16 22 22 Si 1.86799 * 120.00160 * 4.87590 * 20 18 16 23 23 H 1.48501 * 109.47480 * 84.80947 * 22 20 18 24 24 H 1.48497 * 109.47373 * 204.81399 * 22 20 18 25 25 H 1.48506 * 109.46891 * 324.80903 * 22 20 18 26 26 C 1.52999 * 109.47367 * 85.00055 * 16 15 13 27 27 F 1.39891 * 109.47106 * 54.93591 * 26 16 15 28 28 F 1.39895 * 109.47077 * 174.93838 * 26 16 15 29 29 F 1.39901 * 109.46910 * 294.93643 * 26 16 15 30 30 H 1.08997 * 109.46864 * 297.19414 * 1 2 3 31 31 H 1.08996 * 109.46789 * 57.19870 * 1 2 3 32 32 H 1.08996 * 109.46733 * 177.19660 * 1 2 3 33 33 H 1.09004 * 109.47445 * 176.23148 * 6 5 4 34 34 H 1.09002 * 109.47262 * 296.23089 * 6 5 4 35 35 H 1.08997 * 109.46984 * 56.23018 * 6 5 4 36 36 H 1.08999 * 109.47116 * 303.76598 * 7 5 4 37 37 H 1.08999 * 109.47210 * 63.76881 * 7 5 4 38 38 H 1.09000 * 109.47326 * 183.76997 * 7 5 4 39 39 H 1.00904 * 111.00113 * 214.83730 * 8 5 4 40 40 H 1.08997 * 109.47001 * 176.45404 * 11 9 8 41 41 H 1.08998 * 109.47439 * 296.45576 * 11 9 8 42 42 H 0.96996 * 120.00232 * 359.97438 * 12 11 9 43 43 H 0.97003 * 120.00071 * 0.02562 * 15 13 12 44 44 H 0.96999 * 120.00511 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9122 1.0208 0.0000 4 8 2.0419 -0.7349 -1.1362 5 6 3.3697 -1.1291 -0.7289 6 6 4.3401 0.0437 -0.8837 7 6 3.8450 -2.3227 -1.5597 8 7 3.2533 -1.5118 0.6961 9 6 2.0732 -0.7833 1.2153 10 1 2.3694 -0.0965 2.0081 11 6 1.0223 -1.7689 1.7302 12 7 1.6217 -2.6331 2.7501 13 6 0.8784 -3.5851 3.3482 14 8 -0.2897 -3.7263 3.0416 15 7 1.4299 -4.3804 4.2861 16 6 0.6218 -5.4148 4.9367 17 1 -0.4005 -5.0559 5.0556 18 6 1.2043 -5.7299 6.2904 19 1 2.0062 -6.4478 6.3794 20 6 0.7134 -5.1017 7.4153 21 7 1.2838 -5.3035 8.5829 22 14 -0.7620 -3.9639 7.2809 23 1 -2.0116 -4.7632 7.3509 24 1 -0.7365 -2.9862 8.3982 25 1 -0.7107 -3.2377 5.9865 26 6 0.6215 -6.6790 4.0748 27 9 1.9402 -7.0741 3.8261 28 9 -0.0528 -7.7028 4.7489 29 9 -0.0233 -6.4160 2.8615 30 1 -0.3633 0.4696 0.9141 31 1 -0.3633 0.5567 -0.8638 32 1 -0.3632 -1.0264 -0.0503 33 1 5.3225 -0.2458 -0.5108 34 1 4.4167 0.3154 -1.9365 35 1 3.9723 0.8971 -0.3141 36 1 3.1281 -3.1384 -1.4669 37 1 3.9265 -2.0278 -2.6059 38 1 4.8191 -2.6522 -1.1982 39 1 4.0866 -1.2612 1.2071 40 1 0.1892 -1.2172 2.1655 41 1 0.6609 -2.3798 0.9030 42 1 2.5536 -2.5206 2.9943 43 1 2.3617 -4.2675 4.5309 44 1 0.9383 -4.8619 9.3744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576911328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:40 Heat of formation + Delta-G solvation = -223.915088 kcal Electronic energy + Delta-G solvation = -31576.821408 eV Core-core repulsion = 26728.345195 eV Total energy + Delta-G solvation = -4848.476213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.94492 -46.46268 -46.43182 -40.77479 -39.13514 -35.51712 -34.47058 -34.16882 -32.77221 -32.32172 -30.14599 -29.11930 -27.76485 -26.62521 -24.87572 -24.04372 -21.49267 -20.97437 -20.49675 -20.09538 -18.45955 -17.54989 -17.40626 -17.23759 -16.72597 -16.41321 -16.31935 -15.51735 -15.27010 -15.08265 -14.64412 -14.29960 -14.03167 -13.64089 -13.42340 -13.33340 -13.28377 -13.05752 -12.95417 -12.89785 -12.75740 -12.64474 -12.59690 -12.58877 -12.52024 -12.35985 -12.14691 -11.95103 -11.79206 -11.70669 -11.59533 -11.16635 -11.07931 -10.61389 -10.15545 -10.10172 -9.75947 -9.55516 -8.99334 -8.94712 -8.66659 -8.14700 -6.50480 -4.64973 3.08791 3.20718 3.24150 3.34818 3.45874 3.68171 3.77923 4.10914 4.14693 4.26642 4.41298 4.49736 4.56659 4.76077 4.86524 4.91160 5.01066 5.07412 5.18047 5.28606 5.29416 5.34540 5.37083 5.44177 5.52237 5.55479 5.59597 5.66872 5.72602 5.85317 5.94896 6.07937 6.12615 6.36046 6.59418 6.92215 6.96798 7.02618 7.31157 7.57564 7.97261 8.55575 8.76810 9.06285 9.30571 10.57900 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.003410 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.100920 B = 8209.775967 C = 8847.886206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 H 0.074 0.926 4 O -0.355 6.355 5 C 0.251 3.749 6 C -0.195 4.195 7 C -0.126 4.126 8 N -0.670 5.670 9 C 0.033 3.967 10 H 0.080 0.920 11 C 0.162 3.838 12 N -0.743 5.743 13 C 0.692 3.308 14 O -0.596 6.596 15 N -0.728 5.728 16 C 0.222 3.778 17 H 0.088 0.912 18 C -0.535 4.535 19 H 0.093 0.907 20 C 0.100 3.900 21 N -0.861 5.861 22 Si 0.868 3.132 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.252 1.252 26 C 0.436 3.564 27 F -0.194 7.194 28 F -0.184 7.184 29 F -0.194 7.194 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.349 0.651 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.393 0.607 43 H 0.396 0.604 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 12.617 -15.102 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.006 3.994 3 H 0.092 0.908 4 O -0.272 6.272 5 C 0.123 3.877 6 C -0.254 4.254 7 C -0.184 4.184 8 N -0.305 5.305 9 C -0.078 4.078 10 H 0.098 0.902 11 C 0.036 3.964 12 N -0.399 5.399 13 C 0.393 3.607 14 O -0.475 6.475 15 N -0.383 5.383 16 C 0.118 3.882 17 H 0.106 0.894 18 C -0.572 4.572 19 H 0.111 0.889 20 C -0.110 4.110 21 N -0.494 5.494 22 Si 0.693 3.307 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.176 1.176 26 C 0.379 3.621 27 F -0.175 7.175 28 F -0.165 7.165 29 F -0.176 7.176 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.226 0.774 43 H 0.231 0.769 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.211 11.792 -15.523 19.944 hybrid contribution 0.735 1.529 0.383 1.739 sum 4.946 13.321 -15.140 20.764 Atomic orbital electron populations 1.21911 0.92164 1.04242 1.02736 1.23334 0.96641 0.94893 0.84548 0.90836 1.89395 1.28512 1.72656 1.36668 1.23051 0.83705 0.93050 0.87857 1.22821 1.00042 0.98780 1.03766 1.21603 1.01810 0.96568 0.98432 1.63070 1.06335 1.58425 1.02720 1.23220 0.92595 0.94817 0.97144 0.90200 1.21087 0.93457 0.91168 0.90652 1.44955 1.14128 1.37444 1.43373 1.16396 0.85249 0.79486 0.79590 1.90871 1.15530 1.73554 1.67537 1.46636 1.15384 1.35584 1.40701 1.19839 0.96593 0.81288 0.90518 0.89435 1.20759 1.22436 1.27225 0.86808 0.88941 1.24991 0.96230 0.94962 0.94792 1.69863 1.39197 1.41072 0.99302 0.86924 0.83209 0.81400 0.79133 1.19072 1.20736 1.17588 1.21810 0.72687 0.88521 0.79033 1.93056 1.37256 1.92464 1.94746 1.93097 1.80569 1.62520 1.80351 1.93150 1.82050 1.94021 1.48355 0.90552 0.91702 0.90457 0.90935 0.90898 0.92325 0.90878 0.91853 0.91017 0.83337 0.91621 0.91225 0.77409 0.76934 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.48 37.16 0.32 -1.09 16 2 C 0.06 0.61 3.47 -25.97 -0.09 0.52 16 3 H 0.07 0.57 7.29 -51.93 -0.38 0.19 16 4 O -0.36 -4.05 10.92 -35.23 -0.38 -4.43 16 5 C 0.25 2.34 1.50 -67.10 -0.10 2.24 16 6 C -0.19 -1.33 8.73 37.16 0.32 -1.01 16 7 C -0.13 -1.15 9.30 37.16 0.35 -0.81 16 8 N -0.67 -6.30 6.37 -94.77 -0.60 -6.90 16 9 C 0.03 0.32 3.63 -66.30 -0.24 0.08 16 10 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 11 C 0.16 2.18 4.13 -4.04 -0.02 2.16 16 12 N -0.74 -11.42 5.42 -65.23 -0.35 -11.77 16 13 C 0.69 14.15 8.22 -86.92 -0.71 13.44 16 14 O -0.60 -14.35 14.91 5.29 0.08 -14.27 16 15 N -0.73 -15.11 4.91 -59.81 -0.29 -15.41 16 16 C 0.22 5.27 1.71 -69.08 -0.12 5.15 16 17 H 0.09 2.22 4.73 -51.93 -0.25 1.98 16 18 C -0.53 -13.82 8.52 -34.44 -0.29 -14.12 16 19 H 0.09 2.58 8.00 -52.49 -0.42 2.16 16 20 C 0.10 2.63 5.47 -17.82 -0.10 2.54 16 21 N -0.86 -23.74 13.96 55.43 0.77 -22.97 16 22 Si 0.87 20.40 26.99 -169.99 -4.59 15.81 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.25 -6.06 6.82 56.52 0.39 -5.68 16 26 C 0.44 10.13 2.83 37.16 0.11 10.23 16 27 F -0.19 -4.32 16.93 2.25 0.04 -4.29 16 28 F -0.18 -4.32 16.89 2.25 0.04 -4.28 16 29 F -0.19 -4.56 15.83 2.25 0.04 -4.52 16 30 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.85 6.50 -51.93 -0.34 0.51 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.38 6.97 -51.93 -0.36 0.02 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.35 2.55 8.44 -39.29 -0.33 2.22 16 40 H 0.07 0.90 7.23 -51.93 -0.38 0.52 16 41 H 0.07 1.10 7.20 -51.93 -0.37 0.73 16 42 H 0.39 5.02 8.23 -40.82 -0.34 4.68 16 43 H 0.40 7.33 8.61 -40.82 -0.35 6.98 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -31.48 366.43 -6.34 -37.83 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.03 Total: 10.34 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: -0.58 Total: 19.34 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.48 Total: -57.05 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.31 Total: -18.71 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 0.11 Total: -13.09 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.59 Total: 15.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.48 -6.34 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576911328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.088 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds