Wall clock time and date at job start Wed Apr 1 2020 00:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.52607 * 2 1 4 4 O 1.44674 * 110.71991 * 237.10584 * 2 1 3 5 5 C 1.44376 * 104.03557 * 203.21791 * 4 2 1 6 6 C 1.53000 * 110.20972 * 280.71879 * 5 4 2 7 7 C 1.52995 * 110.21269 * 158.81330 * 5 4 2 8 8 N 1.48013 * 105.65630 * 39.76265 * 5 4 2 9 9 C 1.48084 * 105.84411 * 335.36955 * 8 5 4 10 10 H 1.08993 * 110.39185 * 242.17366 * 9 8 5 11 11 C 1.53003 * 110.39155 * 119.89638 * 9 8 5 12 12 N 1.46497 * 109.46715 * 56.46090 * 11 9 8 13 13 C 1.34781 * 119.99949 * 180.02562 * 12 11 9 14 14 O 1.21589 * 119.99485 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00144 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99959 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.46913 * 324.99448 * 16 15 13 18 18 C 1.50705 * 109.46855 * 205.00108 * 16 15 13 19 19 H 1.07995 * 119.99946 * 274.93554 * 18 16 15 20 20 C 1.37872 * 120.00160 * 94.94247 * 18 16 15 21 21 N 1.31513 * 120.00176 * 184.87543 * 20 18 16 22 22 Si 1.86799 * 120.00160 * 4.87590 * 20 18 16 23 23 H 1.48501 * 109.47480 * 84.80947 * 22 20 18 24 24 H 1.48497 * 109.47373 * 204.81399 * 22 20 18 25 25 H 1.48506 * 109.46891 * 324.80903 * 22 20 18 26 26 C 1.52999 * 109.47367 * 85.00055 * 16 15 13 27 27 F 1.39891 * 109.47106 * 54.93591 * 26 16 15 28 28 F 1.39895 * 109.47077 * 174.93838 * 26 16 15 29 29 F 1.39901 * 109.46910 * 294.93643 * 26 16 15 30 30 H 1.08997 * 109.46864 * 297.19414 * 1 2 3 31 31 H 1.08996 * 109.46789 * 57.19870 * 1 2 3 32 32 H 1.08996 * 109.46733 * 177.19660 * 1 2 3 33 33 H 1.09004 * 109.47445 * 176.23148 * 6 5 4 34 34 H 1.09002 * 109.47262 * 296.23089 * 6 5 4 35 35 H 1.08997 * 109.46984 * 56.23018 * 6 5 4 36 36 H 1.08999 * 109.47116 * 303.76598 * 7 5 4 37 37 H 1.08999 * 109.47210 * 63.76881 * 7 5 4 38 38 H 1.09000 * 109.47326 * 183.76997 * 7 5 4 39 39 H 1.00904 * 111.00113 * 214.83730 * 8 5 4 40 40 H 1.08997 * 109.47001 * 176.45404 * 11 9 8 41 41 H 1.08998 * 109.47439 * 296.45576 * 11 9 8 42 42 H 0.96996 * 120.00232 * 359.97438 * 12 11 9 43 43 H 0.97003 * 120.00071 * 0.02562 * 15 13 12 44 44 H 0.96999 * 120.00511 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9122 1.0208 0.0000 4 8 2.0419 -0.7349 -1.1362 5 6 3.3697 -1.1291 -0.7289 6 6 4.3401 0.0437 -0.8837 7 6 3.8450 -2.3227 -1.5597 8 7 3.2533 -1.5118 0.6961 9 6 2.0732 -0.7833 1.2153 10 1 2.3694 -0.0965 2.0081 11 6 1.0223 -1.7689 1.7302 12 7 1.6217 -2.6331 2.7501 13 6 0.8784 -3.5851 3.3482 14 8 -0.2897 -3.7263 3.0416 15 7 1.4299 -4.3804 4.2861 16 6 0.6218 -5.4148 4.9367 17 1 -0.4005 -5.0559 5.0556 18 6 1.2043 -5.7299 6.2904 19 1 2.0062 -6.4478 6.3794 20 6 0.7134 -5.1017 7.4153 21 7 1.2838 -5.3035 8.5829 22 14 -0.7620 -3.9639 7.2809 23 1 -2.0116 -4.7632 7.3509 24 1 -0.7365 -2.9862 8.3982 25 1 -0.7107 -3.2377 5.9865 26 6 0.6215 -6.6790 4.0748 27 9 1.9402 -7.0741 3.8261 28 9 -0.0528 -7.7028 4.7489 29 9 -0.0233 -6.4160 2.8615 30 1 -0.3633 0.4696 0.9141 31 1 -0.3633 0.5567 -0.8638 32 1 -0.3632 -1.0264 -0.0503 33 1 5.3225 -0.2458 -0.5108 34 1 4.4167 0.3154 -1.9365 35 1 3.9723 0.8971 -0.3141 36 1 3.1281 -3.1384 -1.4669 37 1 3.9265 -2.0278 -2.6059 38 1 4.8191 -2.6522 -1.1982 39 1 4.0866 -1.2612 1.2071 40 1 0.1892 -1.2172 2.1655 41 1 0.6609 -2.3798 0.9030 42 1 2.5536 -2.5206 2.9943 43 1 2.3617 -4.2675 4.5309 44 1 0.9383 -4.8619 9.3744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576911328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:39 Heat of formation + Delta-G solvation = -249.984111 kcal Electronic energy + Delta-G solvation = -31577.951846 eV Core-core repulsion = 26728.345195 eV Total energy + Delta-G solvation = -4849.606650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.83735 -48.34259 -48.33255 -41.58685 -40.69571 -36.92829 -36.05116 -34.90588 -34.50085 -33.68133 -30.86490 -30.82451 -28.40901 -27.69276 -26.85071 -24.92673 -23.24157 -21.97489 -21.51997 -21.37433 -20.25741 -19.33387 -18.95250 -18.60913 -18.34273 -18.16611 -17.47331 -16.77275 -16.26632 -16.20899 -15.96227 -15.51520 -15.41952 -15.23458 -15.15927 -14.89655 -14.79000 -14.66444 -14.53454 -14.47997 -14.37860 -14.09294 -13.87278 -13.63221 -13.51691 -13.23125 -13.21955 -13.01242 -12.87212 -12.71240 -12.52142 -12.49731 -12.35053 -11.96278 -11.89730 -11.81462 -11.33262 -10.97652 -10.84607 -10.27994 -9.72218 -9.66993 -8.53809 -6.72069 1.27029 1.34026 1.45908 1.70790 2.00377 2.19308 2.34639 2.68421 2.87188 2.97295 3.21578 3.38795 3.42905 3.57214 3.67569 3.83939 3.90197 3.91907 4.14280 4.24946 4.36958 4.42911 4.50102 4.55465 4.69436 4.78193 4.79881 4.84003 4.88367 4.96981 5.01221 5.03799 5.17088 5.25934 5.39499 5.55299 5.61111 5.86108 5.95288 6.20833 6.41388 6.45205 7.01623 7.24980 7.70179 8.58483 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.003410 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.100920 B = 8209.775967 C = 8847.886206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 H 0.099 0.901 4 O -0.383 6.383 5 C 0.246 3.754 6 C -0.186 4.186 7 C -0.127 4.127 8 N -0.682 5.682 9 C 0.042 3.958 10 H 0.108 0.892 11 C 0.162 3.838 12 N -0.722 5.722 13 C 0.689 3.311 14 O -0.633 6.633 15 N -0.725 5.725 16 C 0.231 3.769 17 H 0.075 0.925 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.066 3.934 21 N -0.897 5.897 22 Si 0.922 3.078 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.261 1.261 26 C 0.436 3.564 27 F -0.188 7.188 28 F -0.186 7.186 29 F -0.194 7.194 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.363 0.637 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.408 0.592 43 H 0.408 0.592 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 14.818 -15.639 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.006 3.994 3 H 0.117 0.883 4 O -0.300 6.300 5 C 0.118 3.882 6 C -0.245 4.245 7 C -0.184 4.184 8 N -0.320 5.320 9 C -0.069 4.069 10 H 0.126 0.874 11 C 0.037 3.963 12 N -0.378 5.378 13 C 0.389 3.611 14 O -0.515 6.515 15 N -0.380 5.380 16 C 0.125 3.875 17 H 0.093 0.907 18 C -0.573 4.573 19 H 0.085 0.915 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.745 3.255 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.185 1.185 26 C 0.380 3.620 27 F -0.169 7.169 28 F -0.168 7.168 29 F -0.176 7.176 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.183 0.817 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.244 0.756 43 H 0.245 0.755 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.207 14.025 -16.070 21.956 hybrid contribution 0.484 0.794 0.446 1.032 sum 5.691 14.819 -15.624 22.273 Atomic orbital electron populations 1.21916 0.92534 1.02816 1.03804 1.23470 0.96465 0.95748 0.83679 0.88286 1.89377 1.29765 1.73196 1.37690 1.23208 0.83538 0.93943 0.87473 1.22732 0.99974 0.97742 1.04080 1.21623 1.01658 0.95911 0.99250 1.62935 1.06902 1.59004 1.03163 1.23114 0.91697 0.94000 0.98091 0.87394 1.21193 0.94965 0.91057 0.89045 1.44789 1.14522 1.35921 1.42554 1.16496 0.85020 0.80067 0.79543 1.90848 1.17344 1.74680 1.68628 1.46152 1.15678 1.35258 1.40945 1.19539 0.96063 0.81937 0.90010 0.90743 1.20668 1.21825 1.26847 0.87993 0.91527 1.25515 0.98043 0.96097 0.94442 1.69922 1.40664 1.42515 1.00034 0.86106 0.80539 0.79977 0.78866 1.19058 1.19356 1.18490 1.21748 0.72902 0.88360 0.78981 1.93064 1.36782 1.92385 1.94694 1.93090 1.80657 1.62621 1.80412 1.93151 1.82102 1.94026 1.48317 0.89214 0.90980 0.93050 0.89381 0.90855 0.91570 0.93684 0.91114 0.89661 0.81749 0.91686 0.94032 0.75564 0.75536 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.48 71.98 0.61 -2.02 16 2 C 0.06 1.07 3.47 31.09 0.11 1.18 16 3 H 0.10 1.17 7.29 -2.39 -0.02 1.15 16 4 O -0.38 -8.21 10.92 -148.98 -1.63 -9.84 16 5 C 0.25 4.08 1.50 44.70 0.07 4.15 16 6 C -0.19 -1.96 8.73 71.98 0.63 -1.33 16 7 C -0.13 -2.18 9.30 71.98 0.67 -1.51 16 8 N -0.68 -11.24 6.37 -552.30 -3.52 -14.76 16 9 C 0.04 0.70 3.63 45.18 0.16 0.87 16 10 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 11 C 0.16 4.20 4.13 86.38 0.36 4.55 16 12 N -0.72 -21.10 5.42 -478.54 -2.59 -23.69 16 13 C 0.69 27.55 8.22 179.05 1.47 29.02 16 14 O -0.63 -30.37 14.91 -4.00 -0.06 -30.43 16 15 N -0.72 -29.48 4.91 -461.41 -2.27 -31.75 16 16 C 0.23 10.88 1.71 44.25 0.08 10.96 16 17 H 0.07 3.76 4.73 -2.39 -0.01 3.75 16 18 C -0.54 -27.74 8.52 25.60 0.22 -27.52 16 19 H 0.07 3.76 8.00 -2.91 -0.02 3.74 16 20 C 0.07 3.44 5.47 84.65 0.46 3.90 16 21 N -0.90 -49.36 13.96 21.45 0.30 -49.06 16 22 Si 0.92 41.75 26.99 68.60 1.85 43.61 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.26 -12.12 6.82 99.48 0.68 -11.44 16 26 C 0.44 20.17 2.83 71.98 0.20 20.38 16 27 F -0.19 -8.29 16.93 44.97 0.76 -7.53 16 28 F -0.19 -8.73 16.89 44.97 0.76 -7.97 16 29 F -0.19 -9.07 15.83 44.97 0.71 -8.36 16 30 H 0.09 1.26 7.76 -2.39 -0.02 1.25 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.14 6.50 -2.39 -0.02 1.13 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.61 6.97 -2.39 -0.02 0.60 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.36 4.11 8.44 -89.69 -0.76 3.35 16 40 H 0.06 1.71 7.23 -2.39 -0.02 1.69 16 41 H 0.04 1.33 7.20 -2.39 -0.02 1.31 16 42 H 0.41 9.45 8.23 -92.71 -0.76 8.69 16 43 H 0.41 14.62 8.61 -92.71 -0.80 13.82 16 44 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.76 366.43 -1.91 -69.67 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -1.27 Total: 27.49 kcal Atomic # 6 Polarization: 37.59 SS G_CDS: 5.04 Total: 42.62 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -8.08 Total: -119.26 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.69 Total: -40.27 kcal Atomic # 9 Polarization: -26.09 SS G_CDS: 2.23 Total: -23.86 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.85 Total: 43.61 kcal Total: -67.76 -1.91 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576911328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.310 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds