Wall clock time and date at job start Wed Apr 1 2020 00:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.16198 * 2 1 4 4 O 1.43634 * 110.13358 * 238.32330 * 2 1 3 5 5 C 1.43709 * 108.23172 * 242.56369 * 4 2 1 6 6 C 1.52997 * 110.18749 * 94.23974 * 5 4 2 7 7 C 1.53001 * 110.18552 * 216.00458 * 5 4 2 8 8 N 1.48566 * 105.79200 * 335.15782 * 5 4 2 9 9 C 1.48971 * 102.28153 * 38.10536 * 8 5 4 10 10 H 1.08995 * 110.77229 * 82.68806 * 9 8 5 11 11 C 1.53004 * 110.76906 * 206.09312 * 9 8 5 12 12 N 1.46493 * 109.47192 * 298.25720 * 11 9 8 13 13 C 1.34784 * 120.00071 * 179.97438 * 12 11 9 14 14 O 1.21582 * 119.99465 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00219 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00337 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46944 * 325.00589 * 16 15 13 18 18 C 1.50696 * 109.47261 * 205.00165 * 16 15 13 19 19 H 1.08000 * 120.00005 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99712 * 179.97438 * 18 16 15 21 21 N 1.31516 * 120.00223 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99990 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47261 * 90.00359 * 22 20 18 24 24 H 1.48500 * 109.47346 * 210.00276 * 22 20 18 25 25 H 1.48498 * 109.46966 * 330.00108 * 22 20 18 26 26 C 1.53003 * 109.46843 * 84.99920 * 16 15 13 27 27 F 1.39903 * 109.46865 * 60.00366 * 26 16 15 28 28 F 1.39899 * 109.46859 * 180.02562 * 26 16 15 29 29 F 1.39898 * 109.47308 * 300.00613 * 26 16 15 30 30 H 1.09003 * 109.46600 * 180.22801 * 1 2 3 31 31 H 1.08996 * 109.47090 * 300.22554 * 1 2 3 32 32 H 1.08995 * 109.47444 * 60.22546 * 1 2 3 33 33 H 1.09002 * 109.47153 * 61.45143 * 6 5 4 34 34 H 1.09001 * 109.46832 * 301.45334 * 6 5 4 35 35 H 1.09004 * 109.47261 * 181.45315 * 6 5 4 36 36 H 1.09005 * 109.46694 * 297.51813 * 7 5 4 37 37 H 1.09001 * 109.47481 * 57.51888 * 7 5 4 38 38 H 1.08993 * 109.47351 * 177.52501 * 7 5 4 39 39 H 1.00905 * 110.99880 * 156.56037 * 8 5 4 40 40 H 1.09005 * 109.46800 * 58.25373 * 11 9 8 41 41 H 1.08999 * 109.47212 * 178.25028 * 11 9 8 42 42 H 0.96998 * 120.00367 * 359.97438 * 12 11 9 43 43 H 0.97002 * 119.99732 * 0.02562 * 15 13 12 44 44 H 0.97005 * 120.00087 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9057 1.0233 0.0000 4 8 2.0244 -0.7082 -1.1477 5 6 2.7696 -1.8471 -0.6865 6 6 1.8704 -3.0842 -0.6435 7 6 3.9694 -2.0989 -1.6020 8 7 3.2312 -1.5009 0.6825 9 6 2.0615 -0.7613 1.2338 10 1 1.3104 -1.4537 1.6138 11 6 2.5027 0.2156 2.3255 12 7 3.1106 -0.5294 3.4308 13 6 3.5765 0.1283 4.5111 14 8 3.4919 1.3398 4.5684 15 7 4.1353 -0.5571 5.5281 16 6 4.6423 0.1578 6.7021 17 1 5.0611 1.1151 6.3917 18 6 5.7132 -0.6667 7.3686 19 1 5.9890 -1.6270 6.9585 20 6 6.3416 -0.1946 8.5013 21 7 6.0062 0.9750 9.0004 22 14 7.6697 -1.2163 9.3272 23 1 8.9927 -0.8685 8.7495 24 1 7.6765 -0.9341 10.7851 25 1 7.3955 -2.6585 9.1035 26 6 3.4963 0.3979 7.6871 27 9 2.9587 -0.8308 8.0854 28 9 3.9803 1.0810 8.8079 29 9 2.5021 1.1632 7.0683 30 1 -0.3632 -1.0277 0.0041 31 1 -0.3633 0.5173 0.8879 32 1 -0.3634 0.5103 -0.8919 33 1 1.5075 -3.3047 -1.6473 34 1 1.0233 -2.8948 0.0157 35 1 2.4399 -3.9345 -0.2681 36 1 3.6170 -2.3321 -2.6068 37 1 4.5953 -1.2070 -1.6343 38 1 4.5505 -2.9369 -1.2172 39 1 3.4199 -2.3328 1.2216 40 1 3.2311 0.9148 1.9147 41 1 1.6366 0.7667 2.6917 42 1 3.1778 -1.4959 3.3852 43 1 4.2025 -1.5237 5.4825 44 1 6.4481 1.3069 9.7976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576911329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:48 Heat of formation + Delta-G solvation = -204.059007 kcal Electronic energy + Delta-G solvation = -31235.235093 eV Core-core repulsion = 26387.619904 eV Total energy + Delta-G solvation = -4847.615188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.30483 -45.95820 -45.57371 -40.73058 -39.21490 -35.49446 -34.43645 -34.27018 -32.83900 -32.31173 -30.11893 -28.69103 -27.68390 -26.96494 -24.53796 -23.40880 -21.68470 -21.23772 -20.95985 -20.05021 -18.30270 -17.09176 -16.82581 -16.75588 -16.57977 -16.55384 -15.91337 -15.41599 -15.11024 -15.05717 -14.71759 -14.34358 -13.83900 -13.69891 -13.51601 -13.27733 -13.19878 -12.91763 -12.83070 -12.64341 -12.58087 -12.48682 -12.35849 -12.25417 -12.20056 -12.04732 -11.93537 -11.78213 -11.76745 -11.51381 -11.22664 -11.12151 -10.83290 -10.77083 -10.38667 -10.09854 -9.64920 -9.53352 -9.08400 -8.79275 -8.69274 -8.14014 -6.22007 -4.45719 3.10894 3.19425 3.26044 3.29048 3.35166 3.63325 3.82609 4.18686 4.27726 4.43202 4.50976 4.60898 4.65029 4.80102 4.88016 4.91080 4.95451 5.05610 5.14742 5.23021 5.35339 5.36883 5.49138 5.53931 5.66480 5.70632 5.80153 5.84462 5.88991 5.91862 5.96648 6.09820 6.25380 6.66478 6.76403 6.85725 6.91406 7.23050 7.38562 7.63848 7.69712 8.51047 8.67341 9.16681 9.27556 10.69655 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002808 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.366011 B = 9968.637248 C =10878.991142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 H 0.094 0.906 4 O -0.362 6.362 5 C 0.250 3.750 6 C -0.195 4.195 7 C -0.132 4.132 8 N -0.656 5.656 9 C 0.024 3.976 10 H 0.070 0.930 11 C 0.162 3.838 12 N -0.749 5.749 13 C 0.700 3.300 14 O -0.583 6.583 15 N -0.726 5.726 16 C 0.263 3.737 17 H 0.085 0.915 18 C -0.551 4.551 19 H 0.077 0.923 20 C 0.065 3.935 21 N -0.839 5.839 22 Si 0.915 3.085 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.271 1.271 26 C 0.416 3.584 27 F -0.211 7.211 28 F -0.138 7.138 29 F -0.217 7.217 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.350 0.650 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.389 0.611 43 H 0.393 0.607 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 -7.977 -16.761 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.112 0.888 4 O -0.280 6.280 5 C 0.121 3.879 6 C -0.254 4.254 7 C -0.190 4.190 8 N -0.291 5.291 9 C -0.086 4.086 10 H 0.088 0.912 11 C 0.037 3.963 12 N -0.406 5.406 13 C 0.400 3.600 14 O -0.461 6.461 15 N -0.379 5.379 16 C 0.156 3.844 17 H 0.103 0.897 18 C -0.589 4.589 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.473 5.473 22 Si 0.742 3.258 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.196 1.196 26 C 0.359 3.641 27 F -0.193 7.193 28 F -0.119 7.119 29 F -0.199 7.199 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.168 0.832 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.221 0.779 43 H 0.226 0.774 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.447 -6.005 -16.896 19.416 hybrid contribution -0.286 -2.236 1.063 2.492 sum -7.733 -8.241 -15.833 19.453 Atomic orbital electron populations 1.22185 0.94211 1.02636 1.03114 1.22817 0.94185 0.96955 0.83407 0.88792 1.88744 1.70246 1.39697 1.29267 1.23034 0.90267 0.85858 0.88741 1.22814 1.00695 0.98233 1.03686 1.21689 0.96019 1.02906 0.98361 1.64573 1.35547 1.26124 1.02841 1.23579 0.92475 0.96774 0.95765 0.91169 1.20957 0.98206 0.92913 0.84271 1.44907 1.66966 1.09481 1.19210 1.16029 0.78441 0.85707 0.79870 1.90920 1.62563 1.11830 1.80738 1.45242 1.63834 1.10083 1.18708 1.19588 0.87968 0.97280 0.79526 0.89729 1.20872 1.19829 1.05627 1.12524 0.90529 1.25079 0.97293 0.95636 0.96410 1.70408 1.37676 1.17467 1.21714 0.86214 0.81052 0.80108 0.78443 1.20197 1.20827 1.19576 1.23193 0.83672 0.72914 0.84300 1.92980 1.88065 1.46034 1.92205 1.93400 1.85661 1.79605 1.53208 1.93070 1.66350 1.77111 1.83337 0.92326 0.90797 0.91386 0.90928 0.92185 0.91167 0.91643 0.90917 0.91213 0.83242 0.90714 0.91173 0.77866 0.77355 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.92 16 2 C 0.08 0.81 3.89 -25.99 -0.10 0.71 16 3 H 0.09 0.93 7.81 -51.92 -0.41 0.53 16 4 O -0.36 -3.90 10.54 -35.23 -0.37 -4.27 16 5 C 0.25 2.21 1.47 -66.79 -0.10 2.11 16 6 C -0.19 -1.36 8.85 37.16 0.33 -1.03 16 7 C -0.13 -1.06 9.29 37.16 0.35 -0.72 16 8 N -0.66 -6.04 6.85 -94.06 -0.64 -6.68 16 9 C 0.02 0.23 2.44 -65.82 -0.16 0.07 16 10 H 0.07 0.58 7.23 -51.93 -0.38 0.21 16 11 C 0.16 2.03 5.30 -4.04 -0.02 2.00 16 12 N -0.75 -10.58 5.48 -65.23 -0.36 -10.94 16 13 C 0.70 13.89 8.10 -86.91 -0.70 13.18 16 14 O -0.58 -14.08 14.91 5.29 0.08 -14.00 16 15 N -0.73 -14.76 4.99 -59.81 -0.30 -15.06 16 16 C 0.26 6.55 2.21 -69.08 -0.15 6.40 16 17 H 0.09 2.39 7.58 -51.93 -0.39 1.99 16 18 C -0.55 -14.02 8.46 -34.44 -0.29 -14.31 16 19 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 20 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 21 N -0.84 -23.06 9.50 55.43 0.53 -22.54 16 22 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 C 0.42 10.73 2.81 37.16 0.10 10.84 16 27 F -0.21 -5.21 16.94 2.25 0.04 -5.17 16 28 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 29 F -0.22 -5.59 15.67 2.25 0.04 -5.56 16 30 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.43 6.91 -51.93 -0.36 0.07 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.35 2.67 8.37 -39.29 -0.33 2.34 16 40 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.39 4.30 8.18 -40.82 -0.33 3.96 16 43 H 0.39 6.79 8.55 -40.82 -0.35 6.44 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -31.72 367.94 -7.23 -38.95 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.30 Total: 8.60 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: -0.49 Total: 19.91 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.77 Total: -55.22 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.27 kcal Atomic # 9 Polarization: -14.64 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.72 -7.23 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576911329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.110 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds