Wall clock time and date at job start Wed Apr 1 2020 00:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.16198 * 2 1 4 4 O 1.43634 * 110.13358 * 238.32330 * 2 1 3 5 5 C 1.43709 * 108.23172 * 242.56369 * 4 2 1 6 6 C 1.52997 * 110.18749 * 94.23974 * 5 4 2 7 7 C 1.53001 * 110.18552 * 216.00458 * 5 4 2 8 8 N 1.48566 * 105.79200 * 335.15782 * 5 4 2 9 9 C 1.48971 * 102.28153 * 38.10536 * 8 5 4 10 10 H 1.08995 * 110.77229 * 82.68806 * 9 8 5 11 11 C 1.53004 * 110.76906 * 206.09312 * 9 8 5 12 12 N 1.46493 * 109.47192 * 298.25720 * 11 9 8 13 13 C 1.34784 * 120.00071 * 179.97438 * 12 11 9 14 14 O 1.21582 * 119.99465 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00219 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00337 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46944 * 325.00589 * 16 15 13 18 18 C 1.50696 * 109.47261 * 205.00165 * 16 15 13 19 19 H 1.08000 * 120.00005 * 0.02562 * 18 16 15 20 20 C 1.37874 * 119.99712 * 179.97438 * 18 16 15 21 21 N 1.31516 * 120.00223 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99990 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47261 * 90.00359 * 22 20 18 24 24 H 1.48500 * 109.47346 * 210.00276 * 22 20 18 25 25 H 1.48498 * 109.46966 * 330.00108 * 22 20 18 26 26 C 1.53003 * 109.46843 * 84.99920 * 16 15 13 27 27 F 1.39903 * 109.46865 * 60.00366 * 26 16 15 28 28 F 1.39899 * 109.46859 * 180.02562 * 26 16 15 29 29 F 1.39898 * 109.47308 * 300.00613 * 26 16 15 30 30 H 1.09003 * 109.46600 * 180.22801 * 1 2 3 31 31 H 1.08996 * 109.47090 * 300.22554 * 1 2 3 32 32 H 1.08995 * 109.47444 * 60.22546 * 1 2 3 33 33 H 1.09002 * 109.47153 * 61.45143 * 6 5 4 34 34 H 1.09001 * 109.46832 * 301.45334 * 6 5 4 35 35 H 1.09004 * 109.47261 * 181.45315 * 6 5 4 36 36 H 1.09005 * 109.46694 * 297.51813 * 7 5 4 37 37 H 1.09001 * 109.47481 * 57.51888 * 7 5 4 38 38 H 1.08993 * 109.47351 * 177.52501 * 7 5 4 39 39 H 1.00905 * 110.99880 * 156.56037 * 8 5 4 40 40 H 1.09005 * 109.46800 * 58.25373 * 11 9 8 41 41 H 1.08999 * 109.47212 * 178.25028 * 11 9 8 42 42 H 0.96998 * 120.00367 * 359.97438 * 12 11 9 43 43 H 0.97002 * 119.99732 * 0.02562 * 15 13 12 44 44 H 0.97005 * 120.00087 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9057 1.0233 0.0000 4 8 2.0244 -0.7082 -1.1477 5 6 2.7696 -1.8471 -0.6865 6 6 1.8704 -3.0842 -0.6435 7 6 3.9694 -2.0989 -1.6020 8 7 3.2312 -1.5009 0.6825 9 6 2.0615 -0.7613 1.2338 10 1 1.3104 -1.4537 1.6138 11 6 2.5027 0.2156 2.3255 12 7 3.1106 -0.5294 3.4308 13 6 3.5765 0.1283 4.5111 14 8 3.4919 1.3398 4.5684 15 7 4.1353 -0.5571 5.5281 16 6 4.6423 0.1578 6.7021 17 1 5.0611 1.1151 6.3917 18 6 5.7132 -0.6667 7.3686 19 1 5.9890 -1.6270 6.9585 20 6 6.3416 -0.1946 8.5013 21 7 6.0062 0.9750 9.0004 22 14 7.6697 -1.2163 9.3272 23 1 8.9927 -0.8685 8.7495 24 1 7.6765 -0.9341 10.7851 25 1 7.3955 -2.6585 9.1035 26 6 3.4963 0.3979 7.6871 27 9 2.9587 -0.8308 8.0854 28 9 3.9803 1.0810 8.8079 29 9 2.5021 1.1632 7.0683 30 1 -0.3632 -1.0277 0.0041 31 1 -0.3633 0.5173 0.8879 32 1 -0.3634 0.5103 -0.8919 33 1 1.5075 -3.3047 -1.6473 34 1 1.0233 -2.8948 0.0157 35 1 2.4399 -3.9345 -0.2681 36 1 3.6170 -2.3321 -2.6068 37 1 4.5953 -1.2070 -1.6343 38 1 4.5505 -2.9369 -1.2172 39 1 3.4199 -2.3328 1.2216 40 1 3.2311 0.9148 1.9147 41 1 1.6366 0.7667 2.6917 42 1 3.1778 -1.4959 3.3852 43 1 4.2025 -1.5237 5.4825 44 1 6.4481 1.3069 9.7976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576911329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:47 Heat of formation + Delta-G solvation = -229.844141 kcal Electronic energy + Delta-G solvation = -31236.353220 eV Core-core repulsion = 26387.619904 eV Total energy + Delta-G solvation = -4848.733316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.37995 -48.01236 -47.69455 -41.54198 -40.72967 -36.86663 -36.06853 -34.95578 -34.49815 -33.60044 -30.80845 -30.32940 -28.32962 -28.06488 -26.54792 -24.42001 -23.28551 -22.15133 -22.02690 -21.42288 -19.90891 -18.86042 -18.75587 -18.53123 -18.02074 -17.59401 -17.25534 -16.85001 -16.38999 -16.29609 -15.93825 -15.53236 -15.22867 -15.06443 -14.91696 -14.55102 -14.42664 -14.34966 -14.26260 -14.15212 -13.99762 -13.93956 -13.86235 -13.82285 -13.29633 -13.17228 -13.05177 -12.97508 -12.77888 -12.72448 -12.59397 -12.48056 -12.19902 -12.18961 -11.90719 -11.56208 -11.24789 -10.82673 -10.66151 -10.30382 -9.78518 -9.74201 -8.18883 -6.49609 1.48133 1.49528 1.60141 1.72149 2.16734 2.38744 2.59339 2.63783 2.93142 2.97065 3.24374 3.61485 3.74672 3.82644 3.84946 3.91205 3.96274 4.06934 4.21610 4.23093 4.40031 4.48552 4.55151 4.69288 4.75619 4.79829 4.84656 4.89784 4.94451 5.00709 5.08180 5.17363 5.29054 5.40521 5.45966 5.50548 5.55945 5.67897 5.99908 6.13122 6.26892 6.55719 7.18074 7.23012 7.67905 8.73931 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002808 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.366011 B = 9968.637248 C =10878.991142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 H 0.082 0.918 4 O -0.381 6.381 5 C 0.244 3.756 6 C -0.189 4.189 7 C -0.131 4.131 8 N -0.668 5.668 9 C 0.038 3.962 10 H 0.091 0.909 11 C 0.163 3.837 12 N -0.723 5.723 13 C 0.696 3.304 14 O -0.630 6.630 15 N -0.719 5.719 16 C 0.271 3.729 17 H 0.044 0.956 18 C -0.560 4.560 19 H 0.093 0.907 20 C 0.014 3.986 21 N -0.875 5.875 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.257 1.257 26 C 0.413 3.587 27 F -0.203 7.203 28 F -0.152 7.152 29 F -0.219 7.219 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.360 0.640 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.408 0.592 43 H 0.410 0.590 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 -10.690 -17.453 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.100 0.900 4 O -0.299 6.299 5 C 0.116 3.884 6 C -0.248 4.248 7 C -0.189 4.189 8 N -0.304 5.304 9 C -0.072 4.072 10 H 0.109 0.891 11 C 0.038 3.962 12 N -0.380 5.380 13 C 0.395 3.605 14 O -0.511 6.511 15 N -0.373 5.373 16 C 0.163 3.837 17 H 0.062 0.938 18 C -0.597 4.597 19 H 0.111 0.889 20 C -0.191 4.191 21 N -0.509 5.509 22 Si 0.807 3.193 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.181 1.181 26 C 0.356 3.644 27 F -0.185 7.185 28 F -0.133 7.133 29 F -0.201 7.201 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.179 0.821 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.244 0.756 43 H 0.246 0.754 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.582 -8.796 -17.645 21.123 hybrid contribution -0.275 -1.359 1.195 1.831 sum -7.857 -10.155 -16.450 20.867 Atomic orbital electron populations 1.22145 0.92715 1.03245 1.03492 1.22849 0.95324 0.96340 0.83194 0.90029 1.88728 1.70631 1.40580 1.29970 1.23229 0.90772 0.86076 0.88329 1.22753 1.00455 0.97617 1.03961 1.21708 0.95747 1.02598 0.98866 1.64514 1.35632 1.26929 1.03361 1.23401 0.92912 0.96343 0.94554 0.89135 1.21017 0.97306 0.93499 0.84367 1.44663 1.65237 1.10439 1.17682 1.16226 0.78320 0.85210 0.80701 1.90892 1.64299 1.14106 1.81767 1.44946 1.63835 1.10724 1.17763 1.19156 0.87847 0.96076 0.80664 0.93779 1.21223 1.19734 1.06149 1.12568 0.88874 1.26008 0.99397 0.96610 0.97110 1.70543 1.39048 1.19184 1.22164 0.85153 0.78135 0.79056 0.76932 1.19649 1.21131 1.18092 1.23346 0.83917 0.72964 0.84148 1.92980 1.87955 1.45394 1.92151 1.93372 1.85909 1.79995 1.54009 1.93061 1.66441 1.77271 1.83312 0.91539 0.90176 0.91301 0.90784 0.92084 0.89524 0.90944 0.92759 0.89736 0.82089 0.92775 0.91489 0.75587 0.75363 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 71.98 0.68 -1.53 16 2 C 0.08 1.47 3.89 31.07 0.12 1.59 16 3 H 0.08 1.64 7.81 -2.38 -0.02 1.62 16 4 O -0.38 -7.77 10.54 -148.98 -1.57 -9.34 16 5 C 0.24 3.86 1.47 44.59 0.07 3.92 16 6 C -0.19 -2.10 8.85 71.98 0.64 -1.46 16 7 C -0.13 -1.92 9.29 71.98 0.67 -1.25 16 8 N -0.67 -11.03 6.85 -550.08 -3.77 -14.80 16 9 C 0.04 0.65 2.44 44.99 0.11 0.76 16 10 H 0.09 1.22 7.23 -2.39 -0.02 1.21 16 11 C 0.16 3.97 5.30 86.38 0.46 4.42 16 12 N -0.72 -19.48 5.48 -478.54 -2.62 -22.10 16 13 C 0.70 27.42 8.10 179.05 1.45 28.87 16 14 O -0.63 -31.08 14.91 -3.97 -0.06 -31.14 16 15 N -0.72 -28.73 4.99 -461.42 -2.30 -31.03 16 16 C 0.27 13.62 2.21 44.25 0.10 13.71 16 17 H 0.04 2.59 7.58 -2.39 -0.02 2.57 16 18 C -0.56 -28.06 8.46 25.60 0.22 -27.85 16 19 H 0.09 4.26 7.74 -2.91 -0.02 4.23 16 20 C 0.01 0.72 5.20 84.65 0.44 1.16 16 21 N -0.88 -48.65 9.50 21.45 0.20 -48.45 16 22 Si 0.98 40.23 29.54 68.60 2.03 42.26 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 C 0.41 21.48 2.81 71.98 0.20 21.68 16 27 F -0.20 -9.86 16.94 44.97 0.76 -9.10 16 28 F -0.15 -8.61 12.91 44.97 0.58 -8.03 16 29 F -0.22 -11.43 15.67 44.97 0.70 -10.73 16 30 H 0.07 0.83 7.86 -2.39 -0.02 0.81 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.68 6.91 -2.39 -0.02 0.66 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.36 4.48 8.37 -89.69 -0.75 3.73 16 40 H 0.05 1.57 8.10 -2.38 -0.02 1.55 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.41 7.97 8.18 -92.71 -0.76 7.21 16 43 H 0.41 13.39 8.55 -92.71 -0.79 12.59 16 44 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -69.10 367.94 -2.13 -71.23 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -1.24 Total: 27.19 kcal Atomic # 6 Polarization: 38.88 SS G_CDS: 5.15 Total: 44.03 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -8.49 Total: -116.38 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.63 Total: -40.48 kcal Atomic # 9 Polarization: -29.91 SS G_CDS: 2.05 Total: -27.86 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -69.10 -2.13 -71.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576911329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.613 kcal (2) G-P(sol) polarization free energy of solvation -69.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds