Wall clock time and date at job start Wed Apr 1 2020 00:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.53009 * 2 1 4 4 O 1.44671 * 110.71914 * 237.10655 * 2 1 3 5 5 C 1.44385 * 104.03722 * 203.21905 * 4 2 1 6 6 C 1.53005 * 110.20982 * 280.72005 * 5 4 2 7 7 C 1.53004 * 110.21121 * 158.81319 * 5 4 2 8 8 N 1.48018 * 105.65423 * 39.76678 * 5 4 2 9 9 C 1.48096 * 105.83938 * 335.36659 * 8 5 4 10 10 H 1.08994 * 110.38890 * 242.06007 * 9 8 5 11 11 C 1.52996 * 110.38929 * 119.78965 * 9 8 5 12 12 N 1.46499 * 109.47260 * 56.45134 * 11 9 8 13 13 C 1.34772 * 120.00170 * 180.02562 * 12 11 9 14 14 O 1.21598 * 120.00043 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00471 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00347 * 179.97438 * 15 13 12 17 17 H 1.09008 * 109.47313 * 35.00168 * 16 15 13 18 18 C 1.50702 * 109.47161 * 154.99743 * 16 15 13 19 19 H 1.07997 * 119.99779 * 0.02562 * 18 16 15 20 20 C 1.37875 * 120.00085 * 179.97438 * 18 16 15 21 21 N 1.31515 * 120.00059 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99906 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47165 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47454 * 120.00295 * 22 20 18 25 25 H 1.48504 * 109.47035 * 239.99769 * 22 20 18 26 26 C 1.52996 * 109.47094 * 275.00051 * 16 15 13 27 27 F 1.39900 * 109.47531 * 60.00171 * 26 16 15 28 28 F 1.39908 * 109.47021 * 179.97438 * 26 16 15 29 29 F 1.39901 * 109.47322 * 299.99651 * 26 16 15 30 30 H 1.09006 * 109.47055 * 297.19864 * 1 2 3 31 31 H 1.09002 * 109.46644 * 57.19116 * 1 2 3 32 32 H 1.08999 * 109.47706 * 177.19465 * 1 2 3 33 33 H 1.08997 * 109.46738 * 176.22608 * 6 5 4 34 34 H 1.08993 * 109.46814 * 296.23102 * 6 5 4 35 35 H 1.09000 * 109.46770 * 56.23175 * 6 5 4 36 36 H 1.09002 * 109.47133 * 303.76954 * 7 5 4 37 37 H 1.08998 * 109.46755 * 63.76969 * 7 5 4 38 38 H 1.09001 * 109.46502 * 183.76957 * 7 5 4 39 39 H 1.00901 * 110.99718 * 214.84339 * 8 5 4 40 40 H 1.08995 * 109.47283 * 176.45288 * 11 9 8 41 41 H 1.09006 * 109.47019 * 296.45507 * 11 9 8 42 42 H 0.97004 * 119.99734 * 359.97438 * 12 11 9 43 43 H 0.97004 * 119.99434 * 359.97438 * 15 13 12 44 44 H 0.96996 * 120.00278 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9122 1.0208 0.0000 4 8 2.0418 -0.7349 -1.1362 5 6 3.3697 -1.1291 -0.7289 6 6 4.3401 0.0437 -0.8837 7 6 3.8449 -2.3228 -1.5598 8 7 3.2532 -1.5120 0.6961 9 6 2.0731 -0.7833 1.2153 10 1 2.3690 -0.0981 2.0095 11 6 1.0210 -1.7690 1.7276 12 7 1.6187 -2.6354 2.7466 13 6 0.8741 -3.5877 3.3424 14 8 -0.2939 -3.7276 3.0345 15 7 1.4238 -4.3845 4.2803 16 6 0.6143 -5.4193 4.9283 17 1 -0.0949 -5.8292 4.2092 18 6 1.5136 -6.5197 5.4300 19 1 2.5813 -6.4544 5.2814 20 6 0.9733 -7.6091 6.0797 21 7 -0.3268 -7.6878 6.2621 22 14 2.0879 -8.9727 6.7022 23 1 3.4991 -8.6469 6.3742 24 1 1.9383 -9.1013 8.1741 25 1 1.7124 -10.2543 6.0527 26 6 -0.1485 -4.8076 6.1051 27 9 -0.9833 -3.7861 5.6394 28 9 -0.9220 -5.7958 6.7236 29 9 0.7618 -4.2815 7.0281 30 1 -0.3633 0.4697 0.9141 31 1 -0.3633 0.5569 -0.8638 32 1 -0.3634 -1.0264 -0.0503 33 1 5.3224 -0.2460 -0.5107 34 1 4.4166 0.3154 -1.9364 35 1 3.9723 0.8971 -0.3139 36 1 3.1279 -3.1385 -1.4671 37 1 3.9263 -2.0278 -2.6060 38 1 4.8190 -2.6523 -1.1983 39 1 4.0865 -1.2614 1.2071 40 1 0.1878 -1.2174 2.1629 41 1 0.6600 -2.3783 0.8989 42 1 2.5506 -2.5240 2.9919 43 1 2.3555 -4.2726 4.5261 44 1 -0.7070 -8.4544 6.7188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576911330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:51 Heat of formation + Delta-G solvation = -199.824522 kcal Electronic energy + Delta-G solvation = -31452.548061 eV Core-core repulsion = 26605.116493 eV Total energy + Delta-G solvation = -4847.431567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.26068 -45.91420 -45.52994 -40.76892 -39.08749 -35.44688 -34.38143 -34.16135 -32.77746 -32.24320 -30.13715 -28.54192 -27.74419 -26.53455 -24.50181 -24.01034 -21.60708 -20.97680 -20.48743 -20.01151 -18.18027 -17.47035 -16.82730 -16.73016 -16.51533 -16.40439 -15.71573 -15.41701 -15.13405 -14.99819 -14.73786 -14.27180 -14.00044 -13.61098 -13.37042 -13.13101 -12.98691 -12.82462 -12.74960 -12.59347 -12.40914 -12.37761 -12.31269 -12.20633 -12.13394 -11.92301 -11.88853 -11.77700 -11.73297 -11.59312 -11.17153 -11.09330 -10.81891 -10.70278 -10.34735 -10.14532 -9.57756 -9.42614 -8.99026 -8.68563 -8.61041 -8.04445 -6.18282 -4.41560 3.18734 3.21196 3.28658 3.32390 3.48172 3.68748 3.92832 4.22827 4.28784 4.44174 4.50949 4.57140 4.66410 4.86889 4.91438 4.98701 5.01434 5.08005 5.19880 5.29911 5.37349 5.45082 5.52430 5.57136 5.67871 5.73442 5.85718 5.92422 5.96010 5.97784 6.10068 6.13390 6.30571 6.59599 6.93411 6.96269 7.02650 7.32026 7.46653 7.68730 7.79870 8.56241 8.78587 9.22452 9.36999 10.73344 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.002962 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.684142 B = 9450.309823 C =10387.456765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 H 0.074 0.926 4 O -0.355 6.355 5 C 0.251 3.749 6 C -0.195 4.195 7 C -0.126 4.126 8 N -0.670 5.670 9 C 0.033 3.967 10 H 0.080 0.920 11 C 0.163 3.837 12 N -0.743 5.743 13 C 0.699 3.301 14 O -0.588 6.588 15 N -0.727 5.727 16 C 0.263 3.737 17 H 0.085 0.915 18 C -0.550 4.550 19 H 0.077 0.923 20 C 0.064 3.936 21 N -0.840 5.840 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.280 1.280 26 C 0.416 3.584 27 F -0.217 7.217 28 F -0.138 7.138 29 F -0.211 7.211 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.348 0.652 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.392 0.608 43 H 0.393 0.607 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 15.273 -11.015 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.006 3.994 3 H 0.092 0.908 4 O -0.272 6.272 5 C 0.123 3.877 6 C -0.254 4.254 7 C -0.184 4.184 8 N -0.305 5.305 9 C -0.078 4.078 10 H 0.098 0.902 11 C 0.037 3.963 12 N -0.399 5.399 13 C 0.398 3.602 14 O -0.465 6.465 15 N -0.380 5.380 16 C 0.156 3.844 17 H 0.102 0.898 18 C -0.587 4.587 19 H 0.095 0.905 20 C -0.145 4.145 21 N -0.473 5.473 22 Si 0.742 3.258 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.359 3.641 27 F -0.199 7.199 28 F -0.119 7.119 29 F -0.193 7.193 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.166 0.834 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.225 0.775 43 H 0.226 0.774 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.398 14.314 -11.530 19.814 hybrid contribution 1.764 0.636 1.133 2.191 sum 9.162 14.950 -10.397 20.385 Atomic orbital electron populations 1.21918 0.92102 1.04307 1.02772 1.23334 0.96688 0.94875 0.84524 0.90849 1.89400 1.28495 1.72659 1.36678 1.23059 0.83721 0.93050 0.87859 1.22819 1.00020 0.98784 1.03772 1.21606 1.01804 0.96577 0.98430 1.63083 1.06309 1.58409 1.02719 1.23223 0.92573 0.94825 0.97140 0.90205 1.21090 0.93457 0.91097 0.90617 1.44854 1.14050 1.37307 1.43710 1.16059 0.84998 0.79363 0.79733 1.90910 1.15294 1.72977 1.67341 1.45228 1.14671 1.36743 1.41319 1.19572 0.92346 0.84193 0.88280 0.89784 1.20925 0.93852 1.03094 1.40802 0.90487 1.25082 0.95612 0.98634 0.95127 1.70422 1.10226 1.28245 1.38433 0.86167 0.80320 0.80875 0.78482 1.19451 1.20638 1.20597 1.23203 0.78413 0.75669 0.86798 1.93069 1.74485 1.63429 1.88883 1.93401 1.76087 1.58256 1.84169 1.92977 1.68352 1.87755 1.70225 0.90503 0.91700 0.90399 0.90963 0.90897 0.92329 0.90833 0.91857 0.91038 0.83400 0.91483 0.91198 0.77550 0.77379 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.48 37.16 0.32 -1.08 16 2 C 0.06 0.60 3.47 -25.97 -0.09 0.51 16 3 H 0.07 0.56 7.29 -51.93 -0.38 0.18 16 4 O -0.36 -4.01 10.92 -35.23 -0.38 -4.39 16 5 C 0.25 2.29 1.50 -67.09 -0.10 2.18 16 6 C -0.19 -1.29 8.73 37.16 0.32 -0.97 16 7 C -0.13 -1.13 9.30 37.16 0.35 -0.79 16 8 N -0.67 -6.10 6.37 -94.75 -0.60 -6.70 16 9 C 0.03 0.31 3.64 -66.30 -0.24 0.07 16 10 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 11 C 0.16 2.17 4.12 -4.04 -0.02 2.15 16 12 N -0.74 -11.22 5.42 -65.23 -0.35 -11.58 16 13 C 0.70 14.41 8.10 -86.92 -0.70 13.71 16 14 O -0.59 -14.58 14.91 5.28 0.08 -14.50 16 15 N -0.73 -15.28 4.99 -59.81 -0.30 -15.57 16 16 C 0.26 6.68 2.21 -69.09 -0.15 6.53 16 17 H 0.08 2.42 7.58 -51.92 -0.39 2.02 16 18 C -0.55 -14.22 8.47 -34.44 -0.29 -14.51 16 19 H 0.08 1.88 7.74 -52.49 -0.41 1.48 16 20 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 21 N -0.84 -23.34 9.50 55.43 0.53 -22.81 16 22 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.42 10.90 2.81 37.16 0.10 11.01 16 27 F -0.22 -5.68 15.67 2.25 0.04 -5.64 16 28 F -0.14 -3.89 12.91 2.25 0.03 -3.86 16 29 F -0.21 -5.29 16.94 2.25 0.04 -5.25 16 30 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.85 6.49 -51.93 -0.34 0.52 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.37 6.97 -51.93 -0.36 0.01 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.35 2.41 8.44 -39.29 -0.33 2.08 16 40 H 0.07 0.92 7.23 -51.93 -0.38 0.54 16 41 H 0.07 1.10 7.19 -51.93 -0.37 0.72 16 42 H 0.39 4.83 8.23 -40.82 -0.34 4.49 16 43 H 0.39 7.10 8.55 -40.82 -0.35 6.75 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -32.41 363.29 -7.22 -39.63 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.14 Total: 9.55 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: -0.60 Total: 20.40 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.73 Total: -56.66 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.31 Total: -18.90 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 0.10 Total: -14.76 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.41 -7.22 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576911330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.197 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds