Wall clock time and date at job start Wed Apr 1 2020 00:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.53009 * 2 1 4 4 O 1.44671 * 110.71914 * 237.10655 * 2 1 3 5 5 C 1.44385 * 104.03722 * 203.21905 * 4 2 1 6 6 C 1.53005 * 110.20982 * 280.72005 * 5 4 2 7 7 C 1.53004 * 110.21121 * 158.81319 * 5 4 2 8 8 N 1.48018 * 105.65423 * 39.76678 * 5 4 2 9 9 C 1.48096 * 105.83938 * 335.36659 * 8 5 4 10 10 H 1.08994 * 110.38890 * 242.06007 * 9 8 5 11 11 C 1.52996 * 110.38929 * 119.78965 * 9 8 5 12 12 N 1.46499 * 109.47260 * 56.45134 * 11 9 8 13 13 C 1.34772 * 120.00170 * 180.02562 * 12 11 9 14 14 O 1.21598 * 120.00043 * 359.97438 * 13 12 11 15 15 N 1.34781 * 120.00471 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00347 * 179.97438 * 15 13 12 17 17 H 1.09008 * 109.47313 * 35.00168 * 16 15 13 18 18 C 1.50702 * 109.47161 * 154.99743 * 16 15 13 19 19 H 1.07997 * 119.99779 * 0.02562 * 18 16 15 20 20 C 1.37875 * 120.00085 * 179.97438 * 18 16 15 21 21 N 1.31515 * 120.00059 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99906 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47165 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47454 * 120.00295 * 22 20 18 25 25 H 1.48504 * 109.47035 * 239.99769 * 22 20 18 26 26 C 1.52996 * 109.47094 * 275.00051 * 16 15 13 27 27 F 1.39900 * 109.47531 * 60.00171 * 26 16 15 28 28 F 1.39908 * 109.47021 * 179.97438 * 26 16 15 29 29 F 1.39901 * 109.47322 * 299.99651 * 26 16 15 30 30 H 1.09006 * 109.47055 * 297.19864 * 1 2 3 31 31 H 1.09002 * 109.46644 * 57.19116 * 1 2 3 32 32 H 1.08999 * 109.47706 * 177.19465 * 1 2 3 33 33 H 1.08997 * 109.46738 * 176.22608 * 6 5 4 34 34 H 1.08993 * 109.46814 * 296.23102 * 6 5 4 35 35 H 1.09000 * 109.46770 * 56.23175 * 6 5 4 36 36 H 1.09002 * 109.47133 * 303.76954 * 7 5 4 37 37 H 1.08998 * 109.46755 * 63.76969 * 7 5 4 38 38 H 1.09001 * 109.46502 * 183.76957 * 7 5 4 39 39 H 1.00901 * 110.99718 * 214.84339 * 8 5 4 40 40 H 1.08995 * 109.47283 * 176.45288 * 11 9 8 41 41 H 1.09006 * 109.47019 * 296.45507 * 11 9 8 42 42 H 0.97004 * 119.99734 * 359.97438 * 12 11 9 43 43 H 0.97004 * 119.99434 * 359.97438 * 15 13 12 44 44 H 0.96996 * 120.00278 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9122 1.0208 0.0000 4 8 2.0418 -0.7349 -1.1362 5 6 3.3697 -1.1291 -0.7289 6 6 4.3401 0.0437 -0.8837 7 6 3.8449 -2.3228 -1.5598 8 7 3.2532 -1.5120 0.6961 9 6 2.0731 -0.7833 1.2153 10 1 2.3690 -0.0981 2.0095 11 6 1.0210 -1.7690 1.7276 12 7 1.6187 -2.6354 2.7466 13 6 0.8741 -3.5877 3.3424 14 8 -0.2939 -3.7276 3.0345 15 7 1.4238 -4.3845 4.2803 16 6 0.6143 -5.4193 4.9283 17 1 -0.0949 -5.8292 4.2092 18 6 1.5136 -6.5197 5.4300 19 1 2.5813 -6.4544 5.2814 20 6 0.9733 -7.6091 6.0797 21 7 -0.3268 -7.6878 6.2621 22 14 2.0879 -8.9727 6.7022 23 1 3.4991 -8.6469 6.3742 24 1 1.9383 -9.1013 8.1741 25 1 1.7124 -10.2543 6.0527 26 6 -0.1485 -4.8076 6.1051 27 9 -0.9833 -3.7861 5.6394 28 9 -0.9220 -5.7958 6.7236 29 9 0.7618 -4.2815 7.0281 30 1 -0.3633 0.4697 0.9141 31 1 -0.3633 0.5569 -0.8638 32 1 -0.3634 -1.0264 -0.0503 33 1 5.3224 -0.2460 -0.5107 34 1 4.4166 0.3154 -1.9364 35 1 3.9723 0.8971 -0.3139 36 1 3.1279 -3.1385 -1.4671 37 1 3.9263 -2.0278 -2.6060 38 1 4.8190 -2.6523 -1.1983 39 1 4.0865 -1.2614 1.2071 40 1 0.1878 -1.2174 2.1629 41 1 0.6600 -2.3783 0.8989 42 1 2.5506 -2.5240 2.9919 43 1 2.3555 -4.2726 4.5261 44 1 -0.7070 -8.4544 6.7188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576911330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:50 Heat of formation + Delta-G solvation = -226.451076 kcal Electronic energy + Delta-G solvation = -31453.702675 eV Core-core repulsion = 26605.116493 eV Total energy + Delta-G solvation = -4848.586181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.37447 -48.00674 -47.68817 -41.57537 -40.66907 -36.82927 -36.03628 -34.89517 -34.47734 -33.59729 -30.82819 -30.30451 -28.38457 -27.66154 -26.53625 -24.92727 -23.44464 -21.95755 -21.50547 -21.35887 -19.86996 -18.85161 -18.73090 -18.51596 -18.25159 -17.80244 -17.06598 -16.82040 -16.40606 -16.14626 -15.96901 -15.43322 -15.30358 -15.07926 -14.92018 -14.69821 -14.45127 -14.40151 -14.26083 -14.01113 -13.99101 -13.86791 -13.82722 -13.50928 -13.23567 -13.20925 -13.00355 -12.85721 -12.75022 -12.64659 -12.61620 -12.48228 -12.33789 -12.17813 -11.88242 -11.52002 -11.25377 -10.83478 -10.67401 -10.24643 -9.70188 -9.65321 -8.18474 -6.49181 1.47937 1.48595 1.61555 1.78941 2.20317 2.39091 2.60451 2.72326 2.97170 2.97865 3.36444 3.58957 3.73934 3.83487 3.90396 3.92038 3.93511 4.15507 4.24048 4.26307 4.39286 4.51487 4.56487 4.70890 4.78964 4.81439 4.84969 4.86636 4.96154 5.02789 5.05185 5.18648 5.27292 5.41207 5.48211 5.56230 5.61178 5.68776 5.96609 6.20863 6.43806 6.56527 7.20061 7.27782 7.73107 8.74556 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.002962 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.684142 B = 9450.309823 C =10387.456765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 H 0.101 0.899 4 O -0.384 6.384 5 C 0.245 3.755 6 C -0.186 4.186 7 C -0.127 4.127 8 N -0.681 5.681 9 C 0.043 3.957 10 H 0.110 0.890 11 C 0.163 3.837 12 N -0.718 5.718 13 C 0.693 3.307 14 O -0.634 6.634 15 N -0.719 5.719 16 C 0.270 3.730 17 H 0.043 0.957 18 C -0.559 4.559 19 H 0.093 0.907 20 C 0.013 3.987 21 N -0.876 5.876 22 Si 0.985 3.015 23 H -0.254 1.254 24 H -0.281 1.281 25 H -0.279 1.279 26 C 0.413 3.587 27 F -0.219 7.219 28 F -0.151 7.151 29 F -0.203 7.203 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.364 0.636 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.409 0.591 43 H 0.409 0.591 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 16.588 -10.831 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.006 3.994 3 H 0.118 0.882 4 O -0.301 6.301 5 C 0.118 3.882 6 C -0.245 4.245 7 C -0.185 4.185 8 N -0.319 5.319 9 C -0.068 4.068 10 H 0.128 0.872 11 C 0.038 3.962 12 N -0.374 5.374 13 C 0.393 3.607 14 O -0.515 6.515 15 N -0.374 5.374 16 C 0.162 3.838 17 H 0.061 0.939 18 C -0.596 4.596 19 H 0.111 0.889 20 C -0.192 4.192 21 N -0.510 5.510 22 Si 0.808 3.192 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.204 1.204 26 C 0.357 3.643 27 F -0.201 7.201 28 F -0.133 7.133 29 F -0.185 7.185 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.183 0.817 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.245 0.755 43 H 0.245 0.755 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.373 15.684 -11.364 21.971 hybrid contribution 0.826 0.262 1.012 1.332 sum 11.199 15.946 -10.352 22.065 Atomic orbital electron populations 1.21924 0.92656 1.02782 1.03805 1.23469 0.96380 0.95808 0.83714 0.88174 1.89380 1.29837 1.73214 1.37717 1.23226 0.83509 0.93976 0.87509 1.22728 0.99978 0.97717 1.04062 1.21627 1.01694 0.95908 0.99226 1.62936 1.06877 1.58971 1.03126 1.23104 0.91632 0.93936 0.98090 0.87197 1.21192 0.95023 0.90998 0.88985 1.44662 1.14446 1.35562 1.42748 1.16286 0.84749 0.79977 0.79691 1.90880 1.17627 1.74332 1.68676 1.44947 1.15035 1.36061 1.41310 1.19148 0.92026 0.85358 0.87241 0.93945 1.21257 0.94536 1.03199 1.40589 0.88948 1.26020 0.96925 1.01037 0.95196 1.70553 1.12124 1.29084 1.39224 0.85091 0.79008 0.77530 0.77546 1.17785 1.20646 1.20432 1.23330 0.78408 0.75442 0.87147 1.93060 1.74656 1.63447 1.88922 1.93374 1.76524 1.58916 1.84455 1.92978 1.67939 1.87591 1.69949 0.89226 0.90979 0.93140 0.89294 0.90916 0.91543 0.93700 0.91177 0.89562 0.81673 0.91827 0.94167 0.75461 0.75451 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.48 71.98 0.61 -2.12 16 2 C 0.06 1.07 3.47 31.09 0.11 1.18 16 3 H 0.10 1.17 7.29 -2.39 -0.02 1.15 16 4 O -0.38 -8.28 10.92 -148.98 -1.63 -9.91 16 5 C 0.25 4.01 1.50 44.70 0.07 4.08 16 6 C -0.19 -1.88 8.73 71.98 0.63 -1.25 16 7 C -0.13 -2.15 9.30 71.98 0.67 -1.48 16 8 N -0.68 -10.87 6.37 -552.23 -3.52 -14.39 16 9 C 0.04 0.72 3.64 45.18 0.16 0.88 16 10 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 11 C 0.16 4.28 4.12 86.38 0.36 4.63 16 12 N -0.72 -21.02 5.42 -478.53 -2.59 -23.61 16 13 C 0.69 28.75 8.10 179.05 1.45 30.20 16 14 O -0.63 -32.51 14.91 -4.02 -0.06 -32.57 16 15 N -0.72 -30.04 4.99 -461.40 -2.30 -32.34 16 16 C 0.27 13.96 2.21 44.25 0.10 14.06 16 17 H 0.04 2.56 7.58 -2.38 -0.02 2.54 16 18 C -0.56 -28.65 8.47 25.60 0.22 -28.43 16 19 H 0.09 4.35 7.74 -2.91 -0.02 4.33 16 20 C 0.01 0.69 5.20 84.65 0.44 1.13 16 21 N -0.88 -49.33 9.50 21.45 0.20 -49.12 16 22 Si 0.98 40.89 29.54 68.60 2.03 42.92 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.41 21.93 2.81 71.98 0.20 22.13 16 27 F -0.22 -11.66 15.67 44.97 0.70 -10.96 16 28 F -0.15 -8.72 12.91 44.97 0.58 -8.14 16 29 F -0.20 -10.04 16.94 44.97 0.76 -9.27 16 30 H 0.09 1.32 7.76 -2.38 -0.02 1.30 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.16 6.49 -2.39 -0.02 1.15 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.58 6.97 -2.39 -0.02 0.57 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.36 3.78 8.44 -89.69 -0.76 3.03 16 40 H 0.06 1.73 7.23 -2.39 -0.02 1.71 16 41 H 0.04 1.31 7.19 -2.38 -0.02 1.30 16 42 H 0.41 9.15 8.23 -92.71 -0.76 8.39 16 43 H 0.41 14.16 8.55 -92.71 -0.79 13.37 16 44 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -71.90 363.29 -2.05 -73.96 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -1.24 Total: 28.42 kcal Atomic # 6 Polarization: 40.00 SS G_CDS: 5.01 Total: 45.01 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -8.21 Total: -119.46 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.69 Total: -42.47 kcal Atomic # 9 Polarization: -30.42 SS G_CDS: 2.05 Total: -28.37 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -71.90 -2.05 -73.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576911330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.495 kcal (2) G-P(sol) polarization free energy of solvation -71.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds