Wall clock time and date at job start Wed Apr 1 2020 00:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08993 * 110.06298 * 2 1 4 4 C 1.53996 * 109.91482 * 238.79685 * 2 1 3 5 5 H 1.09004 * 110.39462 * 358.37825 * 4 2 1 6 6 N 1.46496 * 110.30850 * 120.50708 * 4 2 1 7 7 C 1.34778 * 119.99882 * 202.17028 * 6 4 2 8 8 O 1.21735 * 120.00380 * 359.97438 * 7 6 4 9 9 C 1.46382 * 119.99652 * 180.02562 * 7 6 4 10 10 C 1.33971 * 119.23579 * 359.97438 * 9 7 6 11 11 O 1.34999 * 121.69232 * 180.35089 * 10 9 7 12 12 C 1.43249 * 116.76047 * 342.83957 * 11 10 9 13 13 C 1.53544 * 108.08981 * 45.48819 * 12 11 10 14 14 O 1.36211 * 119.22805 * 179.72857 * 9 7 6 15 15 C 1.54598 * 105.13842 * 239.42346 * 4 2 1 16 16 C 1.54937 * 102.92295 * 338.04385 * 15 4 2 17 17 N 1.47895 * 109.91458 * 121.20728 * 2 1 3 18 18 C 1.46901 * 111.00067 * 265.19365 * 17 2 1 19 19 C 1.50700 * 109.46976 * 176.70745 * 18 17 2 20 20 O 1.21287 * 120.00492 * 353.75417 * 19 18 17 21 21 N 1.34780 * 119.99787 * 173.76254 * 19 18 17 22 22 C 1.37096 * 120.00067 * 179.72230 * 21 19 18 23 23 H 1.07997 * 119.99820 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99993 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00533 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99998 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46990 * 59.99977 * 26 24 22 28 28 H 1.48499 * 109.47163 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46995 * 299.99591 * 26 24 22 30 30 H 1.08999 * 109.46739 * 300.24903 * 1 2 3 31 31 H 1.09000 * 109.46761 * 60.24756 * 1 2 3 32 32 H 1.08997 * 109.46830 * 180.24718 * 1 2 3 33 33 H 0.96998 * 119.99915 * 22.17060 * 6 4 2 34 34 H 1.08007 * 119.15406 * 0.36489 * 10 9 7 35 35 H 1.08998 * 109.73714 * 165.13784 * 12 11 10 36 36 H 1.09001 * 109.73567 * 285.83608 * 12 11 10 37 37 H 1.08999 * 109.75635 * 61.47225 * 13 12 11 38 38 H 1.09007 * 109.75629 * 182.16864 * 13 12 11 39 39 H 1.08995 * 110.72330 * 219.68437 * 15 4 2 40 40 H 1.08997 * 110.72719 * 96.39909 * 15 4 2 41 41 H 1.09002 * 110.66549 * 278.98568 * 16 15 4 42 42 H 1.08990 * 110.81529 * 155.91641 * 16 15 4 43 43 H 1.09001 * 109.46919 * 56.70648 * 18 17 2 44 44 H 1.08996 * 109.47448 * 296.70728 * 18 17 2 45 45 H 0.97006 * 120.00137 * 359.97438 * 21 19 18 46 46 H 0.96998 * 120.00523 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2384 5 1 1.2238 -1.1401 -1.8265 6 7 2.8836 0.1378 -2.0573 7 6 3.0743 -0.1334 -3.3637 8 8 2.5582 -1.1163 -3.8631 9 6 3.9031 0.7535 -4.1818 10 6 4.4642 1.8307 -3.6164 11 8 5.2315 2.6854 -4.3258 12 6 5.7314 2.2126 -5.5822 13 6 4.5770 1.5269 -6.3270 14 8 4.0899 0.4616 -5.4991 15 6 2.9059 -1.9117 -0.6763 16 6 3.2682 -1.4186 0.7471 17 7 2.0339 -0.7205 1.1893 18 6 2.3212 0.2122 2.2873 19 6 2.7541 -0.5633 3.5048 20 8 2.7089 -1.7753 3.4996 21 7 3.1913 0.0900 4.5996 22 6 3.5796 -0.6152 5.7092 23 1 3.5349 -1.6942 5.7062 24 6 4.0309 0.0583 6.8377 25 7 4.0858 1.3713 6.8412 26 14 4.5607 -0.9026 8.3494 27 1 5.6875 -1.8024 7.9942 28 1 4.9974 0.0422 9.4086 29 1 3.4191 -1.7115 8.8470 30 1 -0.3633 0.5177 0.8878 31 1 -0.3633 0.5100 -0.8922 32 1 -0.3633 -1.0276 0.0044 33 1 3.2952 0.9208 -1.6594 34 1 4.2985 2.0201 -2.5661 35 1 6.1019 3.0522 -6.1704 36 1 6.5364 1.4976 -5.4125 37 1 3.7802 2.2467 -6.5144 38 1 4.9376 1.1221 -7.2727 39 1 3.8052 -2.0558 -1.2751 40 1 2.3214 -2.8305 -0.6290 41 1 4.1098 -0.7268 0.7120 42 1 3.4905 -2.2598 1.4035 43 1 1.4240 0.7852 2.5214 44 1 3.1185 0.8921 1.9872 45 1 3.2277 1.0594 4.6037 46 1 4.4005 1.8415 7.6291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656912315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:19 Heat of formation + Delta-G solvation = -106.726288 kcal Electronic energy + Delta-G solvation = -29648.024533 eV Core-core repulsion = 25346.486749 eV Total energy + Delta-G solvation = -4301.537785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51978 -40.21870 -38.87067 -37.69236 -37.25470 -34.63117 -33.87988 -32.67070 -31.36129 -31.24411 -30.83636 -29.12786 -26.49501 -25.88396 -25.14729 -24.12167 -22.52276 -21.08276 -20.60111 -19.74807 -19.17394 -18.71887 -18.59965 -17.88327 -16.86699 -16.50057 -15.98818 -15.83985 -15.45710 -15.23177 -14.91523 -14.86207 -14.65444 -14.50470 -14.40761 -14.02224 -13.79714 -13.72454 -13.43672 -12.96620 -12.73205 -12.48572 -12.24829 -11.93994 -11.71912 -11.51847 -11.46233 -11.33274 -11.24886 -11.13277 -11.09845 -10.82199 -10.74367 -10.44874 -10.22181 -10.13797 -9.49482 -9.31388 -8.62885 -8.48950 -8.05429 -7.95139 -6.42523 -3.83271 0.91616 2.23323 2.67056 2.95436 3.19547 3.25286 3.29521 3.35187 3.80985 3.89720 3.98497 4.22472 4.29637 4.35678 4.41362 4.44681 4.67106 4.70473 4.82777 4.93784 5.00489 5.15416 5.23298 5.26177 5.32793 5.41534 5.44797 5.62724 5.67565 5.79424 5.90505 5.91314 5.92046 6.12625 6.22493 6.25088 6.30497 6.37030 6.47334 6.81685 7.12622 7.15581 7.24070 7.54326 7.91726 8.05221 8.61013 9.17494 9.53462 10.05485 10.75192 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002234 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.351144 B =12530.347024 C =13396.070038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.056 0.944 4 C 0.141 3.859 5 H 0.103 0.897 6 N -0.716 5.716 7 C 0.576 3.424 8 O -0.518 6.518 9 C -0.069 4.069 10 C 0.007 3.993 11 O -0.299 6.299 12 C 0.013 3.987 13 C 0.018 3.982 14 O -0.285 6.285 15 C -0.131 4.131 16 C 0.040 3.960 17 N -0.484 5.484 18 C 0.038 3.962 19 C 0.444 3.556 20 O -0.576 6.576 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.178 0.822 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 6.712 -23.969 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 H 0.074 0.926 4 C 0.036 3.964 5 H 0.121 0.879 6 N -0.371 5.371 7 C 0.363 3.637 8 O -0.395 6.395 9 C -0.118 4.118 10 C -0.060 4.060 11 O -0.211 6.211 12 C -0.062 4.062 13 C -0.058 4.058 14 O -0.199 6.199 15 C -0.170 4.170 16 C -0.088 4.088 17 N -0.209 5.209 18 C -0.094 4.094 19 C 0.229 3.771 20 O -0.459 6.459 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.195 0.805 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.224 0.776 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.175 4.955 -24.027 24.533 hybrid contribution 1.285 1.448 0.668 2.048 sum 1.460 6.402 -23.359 24.265 Atomic orbital electron populations 1.21717 0.92947 1.03020 1.01404 1.22664 0.97240 0.96005 0.89466 0.92644 1.21973 0.93551 0.89951 0.90881 0.87875 1.46032 1.52812 1.29532 1.08705 1.17083 0.80434 0.84688 0.81498 1.90866 1.48845 1.27642 1.72106 1.20405 1.05139 1.00086 0.86162 1.23144 0.93817 0.92028 0.96986 1.86118 1.63084 1.39616 1.32320 1.23757 0.96264 1.01823 0.84376 1.23709 0.96897 0.90830 0.94359 1.86480 1.81887 1.36139 1.15384 1.22928 1.00043 0.98240 0.95808 1.23316 0.90431 0.99701 0.95307 1.64509 1.27680 1.24711 1.03978 1.22076 1.00700 0.94163 0.92448 1.19671 0.84312 0.88511 0.84601 1.90514 1.58713 1.13713 1.82979 1.41860 1.57015 1.09264 1.12047 1.19641 1.39535 0.93247 0.90355 0.87973 1.25251 0.97587 0.95711 0.99388 1.69599 1.47370 1.06551 1.30919 0.85926 0.79182 0.78851 0.80315 1.19931 1.21005 1.19873 0.92018 0.92584 0.91370 0.76782 0.80522 0.85945 0.89900 0.90314 0.85932 0.90836 0.89538 0.94471 0.87818 0.89188 0.93540 0.77554 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.32 37.16 0.35 -1.12 16 2 C 0.06 0.66 2.87 -66.64 -0.19 0.47 16 3 H 0.06 0.57 7.23 -51.93 -0.38 0.20 16 4 C 0.14 1.65 2.93 -66.57 -0.20 1.46 16 5 H 0.10 1.29 7.19 -51.93 -0.37 0.92 16 6 N -0.72 -7.23 5.01 -53.88 -0.27 -7.50 16 7 C 0.58 7.17 7.72 -12.98 -0.10 7.07 16 8 O -0.52 -8.54 16.61 -10.06 -0.17 -8.70 16 9 C -0.07 -0.73 6.61 -37.81 -0.25 -0.98 16 10 C 0.01 0.06 10.57 29.23 0.31 0.36 16 11 O -0.30 -2.39 10.47 -30.82 -0.32 -2.71 16 12 C 0.01 0.07 7.29 37.44 0.27 0.34 16 13 C 0.02 0.11 7.32 37.44 0.27 0.38 16 14 O -0.29 -3.18 10.29 -45.75 -0.47 -3.65 16 15 C -0.13 -1.73 6.78 -24.87 -0.17 -1.90 16 16 C 0.04 0.62 5.79 -1.89 -0.01 0.61 16 17 N -0.48 -7.62 4.62 -224.00 -1.03 -8.65 16 18 C 0.04 0.64 5.18 -4.98 -0.03 0.62 16 19 C 0.44 10.20 7.47 -10.98 -0.08 10.12 16 20 O -0.58 -15.24 14.39 5.55 0.08 -15.16 16 21 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 22 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 26 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 2.97 6.12 -40.82 -0.25 2.72 16 34 H 0.18 0.99 6.08 -52.48 -0.32 0.67 16 35 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.55 7.91 -51.93 -0.41 0.14 16 42 H 0.10 1.95 6.84 -51.93 -0.36 1.60 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.05 0.70 7.99 -51.93 -0.41 0.29 16 45 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -35.14 379.68 -7.44 -42.58 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.55 Total: 10.25 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.06 Total: 9.57 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.64 Total: -53.80 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.88 Total: -30.22 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.14 -7.44 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656912315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.149 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds