Wall clock time and date at job start Wed Apr 1 2020 00:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08993 * 110.06298 * 2 1 4 4 C 1.53996 * 109.91482 * 238.79685 * 2 1 3 5 5 H 1.09004 * 110.39462 * 358.37825 * 4 2 1 6 6 N 1.46496 * 110.30850 * 120.50708 * 4 2 1 7 7 C 1.34778 * 119.99882 * 202.17028 * 6 4 2 8 8 O 1.21735 * 120.00380 * 359.97438 * 7 6 4 9 9 C 1.46382 * 119.99652 * 180.02562 * 7 6 4 10 10 C 1.33971 * 119.23579 * 359.97438 * 9 7 6 11 11 O 1.34999 * 121.69232 * 180.35089 * 10 9 7 12 12 C 1.43249 * 116.76047 * 342.83957 * 11 10 9 13 13 C 1.53544 * 108.08981 * 45.48819 * 12 11 10 14 14 O 1.36211 * 119.22805 * 179.72857 * 9 7 6 15 15 C 1.54598 * 105.13842 * 239.42346 * 4 2 1 16 16 C 1.54937 * 102.92295 * 338.04385 * 15 4 2 17 17 N 1.47895 * 109.91458 * 121.20728 * 2 1 3 18 18 C 1.46901 * 111.00067 * 265.19365 * 17 2 1 19 19 C 1.50700 * 109.46976 * 176.70745 * 18 17 2 20 20 O 1.21287 * 120.00492 * 353.75417 * 19 18 17 21 21 N 1.34780 * 119.99787 * 173.76254 * 19 18 17 22 22 C 1.37096 * 120.00067 * 179.72230 * 21 19 18 23 23 H 1.07997 * 119.99820 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99993 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00533 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99998 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46990 * 59.99977 * 26 24 22 28 28 H 1.48499 * 109.47163 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46995 * 299.99591 * 26 24 22 30 30 H 1.08999 * 109.46739 * 300.24903 * 1 2 3 31 31 H 1.09000 * 109.46761 * 60.24756 * 1 2 3 32 32 H 1.08997 * 109.46830 * 180.24718 * 1 2 3 33 33 H 0.96998 * 119.99915 * 22.17060 * 6 4 2 34 34 H 1.08007 * 119.15406 * 0.36489 * 10 9 7 35 35 H 1.08998 * 109.73714 * 165.13784 * 12 11 10 36 36 H 1.09001 * 109.73567 * 285.83608 * 12 11 10 37 37 H 1.08999 * 109.75635 * 61.47225 * 13 12 11 38 38 H 1.09007 * 109.75629 * 182.16864 * 13 12 11 39 39 H 1.08995 * 110.72330 * 219.68437 * 15 4 2 40 40 H 1.08997 * 110.72719 * 96.39909 * 15 4 2 41 41 H 1.09002 * 110.66549 * 278.98568 * 16 15 4 42 42 H 1.08990 * 110.81529 * 155.91641 * 16 15 4 43 43 H 1.09001 * 109.46919 * 56.70648 * 18 17 2 44 44 H 1.08996 * 109.47448 * 296.70728 * 18 17 2 45 45 H 0.97006 * 120.00137 * 359.97438 * 21 19 18 46 46 H 0.96998 * 120.00523 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0547 -0.7501 -1.2384 5 1 1.2238 -1.1401 -1.8265 6 7 2.8836 0.1378 -2.0573 7 6 3.0743 -0.1334 -3.3637 8 8 2.5582 -1.1163 -3.8631 9 6 3.9031 0.7535 -4.1818 10 6 4.4642 1.8307 -3.6164 11 8 5.2315 2.6854 -4.3258 12 6 5.7314 2.2126 -5.5822 13 6 4.5770 1.5269 -6.3270 14 8 4.0899 0.4616 -5.4991 15 6 2.9059 -1.9117 -0.6763 16 6 3.2682 -1.4186 0.7471 17 7 2.0339 -0.7205 1.1893 18 6 2.3212 0.2122 2.2873 19 6 2.7541 -0.5633 3.5048 20 8 2.7089 -1.7753 3.4996 21 7 3.1913 0.0900 4.5996 22 6 3.5796 -0.6152 5.7092 23 1 3.5349 -1.6942 5.7062 24 6 4.0309 0.0583 6.8377 25 7 4.0858 1.3713 6.8412 26 14 4.5607 -0.9026 8.3494 27 1 5.6875 -1.8024 7.9942 28 1 4.9974 0.0422 9.4086 29 1 3.4191 -1.7115 8.8470 30 1 -0.3633 0.5177 0.8878 31 1 -0.3633 0.5100 -0.8922 32 1 -0.3633 -1.0276 0.0044 33 1 3.2952 0.9208 -1.6594 34 1 4.2985 2.0201 -2.5661 35 1 6.1019 3.0522 -6.1704 36 1 6.5364 1.4976 -5.4125 37 1 3.7802 2.2467 -6.5144 38 1 4.9376 1.1221 -7.2727 39 1 3.8052 -2.0558 -1.2751 40 1 2.3214 -2.8305 -0.6290 41 1 4.1098 -0.7268 0.7120 42 1 3.4905 -2.2598 1.4035 43 1 1.4240 0.7852 2.5214 44 1 3.1185 0.8921 1.9872 45 1 3.2277 1.0594 4.6037 46 1 4.4005 1.8415 7.6291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656912315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:18 Heat of formation + Delta-G solvation = -134.611247 kcal Electronic energy + Delta-G solvation = -29649.233716 eV Core-core repulsion = 25346.486749 eV Total energy + Delta-G solvation = -4302.746967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18804 -41.22679 -40.20166 -39.13267 -37.97333 -36.01871 -35.50788 -33.53726 -33.19527 -32.28890 -31.88619 -29.83033 -28.02699 -26.64912 -26.03308 -25.80134 -23.40892 -22.15821 -21.58440 -20.98101 -20.38777 -19.84848 -19.40644 -19.33016 -17.77522 -17.52723 -17.28780 -16.72043 -16.56840 -16.43245 -16.21079 -15.87204 -15.75708 -15.66726 -15.36114 -15.15603 -15.07512 -14.96477 -14.33286 -14.23499 -13.82043 -13.67805 -13.45231 -13.20409 -12.97068 -12.93612 -12.73796 -12.43624 -12.40529 -12.36378 -12.15261 -12.11530 -11.97986 -11.75730 -11.70959 -11.45115 -11.04490 -10.32280 -10.23703 -9.98016 -9.33016 -9.29321 -8.44608 -5.92541 0.19466 1.40425 1.42396 1.50067 1.52903 2.02940 2.09068 2.20999 2.29560 2.63044 2.85620 3.22548 3.31551 3.37697 3.45730 3.67390 3.72989 3.91853 3.96843 4.02770 4.17974 4.23555 4.27691 4.34267 4.41850 4.43377 4.46418 4.58418 4.62251 4.73591 4.79184 4.83347 4.90921 5.00055 5.05514 5.14356 5.32061 5.41770 5.43950 5.73609 5.86407 5.97895 6.12051 6.15729 6.46656 6.63836 7.05781 7.16020 7.59968 8.16508 8.72541 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002234 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.351144 B =12530.347024 C =13396.070038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.062 3.938 3 H 0.084 0.916 4 C 0.150 3.850 5 H 0.097 0.903 6 N -0.700 5.700 7 C 0.577 3.423 8 O -0.570 6.570 9 C -0.101 4.101 10 C 0.039 3.961 11 O -0.307 6.307 12 C 0.010 3.990 13 C 0.012 3.988 14 O -0.321 6.321 15 C -0.124 4.124 16 C 0.044 3.956 17 N -0.506 5.506 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.616 6.616 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.412 0.588 34 H 0.204 0.796 35 H 0.156 0.844 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 9.234 -24.758 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 H 0.102 0.898 4 C 0.045 3.955 5 H 0.115 0.885 6 N -0.355 5.355 7 C 0.366 3.634 8 O -0.450 6.450 9 C -0.150 4.150 10 C -0.028 4.028 11 O -0.218 6.218 12 C -0.064 4.064 13 C -0.063 4.063 14 O -0.236 6.236 15 C -0.163 4.163 16 C -0.084 4.084 17 N -0.231 5.231 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.502 6.502 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.220 0.780 35 H 0.173 0.827 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.230 0.770 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.778 7.541 -24.819 25.951 hybrid contribution 1.138 0.702 0.821 1.569 sum 1.917 8.243 -23.999 25.447 Atomic orbital electron populations 1.21727 0.92154 1.02541 1.02518 1.22700 0.97707 0.96853 0.87426 0.89788 1.21762 0.93184 0.89662 0.90895 0.88531 1.45821 1.52186 1.29552 1.07967 1.17427 0.79867 0.84230 0.81911 1.90834 1.51108 1.29911 1.73148 1.20187 1.07204 1.01194 0.86416 1.23524 0.91415 0.90146 0.97758 1.86119 1.62549 1.39796 1.33375 1.24047 0.95770 1.03172 0.83446 1.24018 0.97295 0.90286 0.94708 1.86409 1.82748 1.38509 1.15939 1.22823 1.00270 0.98608 0.94576 1.23140 0.91021 0.98691 0.95521 1.64432 1.27754 1.25581 1.05327 1.21953 1.02400 0.93699 0.90038 1.20772 0.82336 0.88447 0.85594 1.90496 1.59802 1.15942 1.83915 1.41918 1.57769 1.09381 1.12180 1.19579 1.41646 0.92546 0.92246 0.90512 1.25974 0.97057 0.96684 1.01481 1.69653 1.47335 1.07337 1.31782 0.85044 0.78620 0.77806 0.77207 1.19835 1.19505 1.19863 0.91952 0.90365 0.92741 0.74948 0.78008 0.82659 0.89704 0.89848 0.83686 0.90671 0.90505 0.93448 0.91937 0.86968 0.90694 0.76981 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.32 71.99 0.67 -1.94 16 2 C 0.06 1.31 2.87 45.06 0.13 1.44 16 3 H 0.08 1.36 7.23 -2.39 -0.02 1.35 16 4 C 0.15 3.32 2.93 45.87 0.13 3.46 16 5 H 0.10 2.36 7.19 -2.38 -0.02 2.34 16 6 N -0.70 -12.78 5.01 -442.59 -2.22 -15.00 16 7 C 0.58 13.94 7.72 86.36 0.67 14.61 16 8 O -0.57 -19.13 16.61 10.09 0.17 -18.96 16 9 C -0.10 -2.04 6.61 23.42 0.15 -1.88 16 10 C 0.04 0.53 10.57 66.85 0.71 1.23 16 11 O -0.31 -3.95 10.47 -69.22 -0.72 -4.67 16 12 C 0.01 0.08 7.29 72.17 0.53 0.61 16 13 C 0.01 0.12 7.32 72.17 0.53 0.65 16 14 O -0.32 -6.98 10.29 -71.74 -0.74 -7.72 16 15 C -0.12 -3.26 6.78 31.80 0.22 -3.05 16 16 C 0.04 1.36 5.79 86.65 0.50 1.87 16 17 N -0.51 -15.33 4.62 -862.61 -3.99 -19.32 16 18 C 0.05 1.62 5.18 85.56 0.44 2.06 16 19 C 0.44 20.40 7.47 87.66 0.65 21.06 16 20 O -0.62 -33.65 14.39 -3.05 -0.04 -33.69 16 21 N -0.57 -28.77 5.29 -306.99 -1.62 -30.40 16 22 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -48.90 13.05 21.66 0.28 -48.61 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.41 4.80 6.12 -92.71 -0.57 4.23 16 34 H 0.20 1.47 6.08 -2.91 -0.02 1.45 16 35 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.15 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 42 H 0.06 2.47 6.84 -2.39 -0.02 2.45 16 43 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.08 2.01 7.99 -2.39 -0.02 1.99 16 45 H 0.40 18.68 7.90 -92.70 -0.73 17.95 16 46 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -79.35 379.68 -0.51 -79.86 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.27 Total: 31.56 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.61 Total: 22.20 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -7.54 Total: -113.33 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -1.34 Total: -65.04 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -79.35 -0.51 -79.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656912315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.750 kcal (2) G-P(sol) polarization free energy of solvation -79.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds