Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 C 1.52994 * 109.47393 * 239.99454 * 2 1 3 5 5 O 1.42905 * 109.46862 * 59.99935 * 4 2 1 6 6 O 1.42898 * 109.46677 * 119.99519 * 2 1 3 7 7 N 1.41596 * 114.00454 * 299.99711 * 6 2 1 8 8 C 1.34775 * 120.00349 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 6 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.08999 * 109.47479 * 300.00378 * 1 2 3 29 29 H 1.09000 * 109.46775 * 60.00476 * 1 2 3 30 30 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47004 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46657 * 300.00067 * 3 2 1 33 33 H 1.08999 * 109.47262 * 59.99489 * 3 2 1 34 34 H 1.08999 * 109.47636 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47006 * 300.00418 * 4 2 1 36 36 H 0.96700 * 113.99960 * 180.02562 * 5 4 2 37 37 H 0.97000 * 119.99869 * 0.02562 * 7 6 2 38 38 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 39 39 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 40 40 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 1.5637 -0.0478 -2.4160 6 8 2.0062 -0.6735 1.1668 7 7 1.5885 -0.0826 2.3839 8 6 1.9692 -0.6202 3.5597 9 8 2.6711 -1.6129 3.5754 10 7 1.5711 -0.0579 4.7181 11 6 1.9650 -0.6150 5.9359 12 7 2.7333 -1.6916 5.9467 13 6 3.1242 -2.2531 7.0751 14 6 2.7474 -1.7303 8.2963 15 6 1.9463 -0.5975 8.3333 16 6 1.5511 -0.0276 7.1312 17 8 0.7658 1.0825 7.1189 18 6 0.3792 1.6177 8.3863 19 6 -0.4944 2.8554 8.1721 20 6 -0.9025 3.4195 9.5086 21 1 -0.5722 2.9427 10.4196 22 6 -1.6985 4.5437 9.5684 23 7 -2.0551 5.0357 10.7348 24 14 -2.2704 5.3681 7.9927 25 1 -3.5647 4.7778 7.5669 26 1 -2.4443 6.8235 8.2304 27 1 -1.2566 5.1581 6.9281 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1301 -0.7210 -1.2494 35 1 1.6767 -1.7490 -1.2490 36 1 1.8487 -0.4516 -3.2471 37 1 1.0283 0.7092 2.3714 38 1 1.0109 0.7338 4.7056 39 1 3.7481 -3.1341 7.0431 40 1 3.0728 -2.1983 9.2136 41 1 1.6383 -0.1691 9.2756 42 1 1.2697 1.8951 8.9505 43 1 -0.1835 0.8671 8.9414 44 1 0.0686 3.6058 7.6172 45 1 -1.3848 2.5784 7.6078 46 1 -2.6148 5.8269 10.7768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670966800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = -55.345421 kcal Electronic energy + Delta-G solvation = -29126.784739 eV Core-core repulsion = 24827.474996 eV Total energy + Delta-G solvation = -4299.309743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97627 -39.83455 -38.91597 -37.87103 -36.89648 -34.81960 -33.54146 -33.46130 -31.89109 -31.42506 -30.66171 -28.98587 -27.79778 -26.81359 -25.65835 -23.74439 -22.83897 -21.36946 -20.96127 -20.55256 -18.93816 -18.52203 -18.03953 -17.68897 -16.84629 -16.54569 -16.14095 -16.11774 -15.82020 -15.40801 -15.33625 -14.84582 -14.44364 -14.32490 -14.27383 -14.06047 -13.96098 -13.58728 -13.18319 -13.10743 -12.63294 -12.58534 -12.34533 -12.28737 -12.20344 -12.07711 -11.35342 -11.27038 -11.11741 -11.00613 -10.79159 -10.51862 -10.50120 -10.32583 -10.17370 -9.95542 -9.46382 -9.30282 -9.14788 -9.05927 -8.71348 -7.73446 -6.21918 -4.23693 1.21012 1.21794 1.40514 3.13214 3.16865 3.20411 3.28451 3.30825 3.41078 3.76390 3.99329 4.18231 4.23638 4.30015 4.42310 4.48749 4.58421 4.91493 4.96906 5.00011 5.05337 5.11818 5.16486 5.18187 5.33439 5.39486 5.43254 5.46256 5.74397 5.76177 5.77812 5.80132 5.97387 6.10197 6.25371 6.33999 6.35451 6.54417 6.73557 6.93486 7.03089 7.09825 7.46038 7.52791 7.65208 8.17230 8.29112 8.53924 8.78445 9.37628 10.90492 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.002763 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.304569 B =10129.647091 C =12979.271948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 C -0.169 4.169 4 C 0.099 3.901 5 O -0.564 6.564 6 O -0.113 6.113 7 N -0.609 5.609 8 C 0.714 3.286 9 O -0.515 6.515 10 N -0.653 5.653 11 C 0.349 3.651 12 N -0.441 5.441 13 C 0.080 3.920 14 C -0.160 4.160 15 C -0.143 4.143 16 C 0.066 3.934 17 O -0.321 6.321 18 C 0.073 3.927 19 C -0.008 4.008 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.264 1.264 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.389 0.611 37 H 0.404 0.596 38 H 0.420 0.580 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 -11.361 -20.660 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.042 3.958 3 C -0.227 4.227 4 C 0.019 3.981 5 O -0.370 6.370 6 O -0.118 6.118 7 N -0.315 5.315 8 C 0.413 3.587 9 O -0.383 6.383 10 N -0.306 5.306 11 C 0.116 3.884 12 N -0.156 5.156 13 C -0.077 4.077 14 C -0.181 4.181 15 C -0.170 4.170 16 C 0.015 3.985 17 O -0.234 6.234 18 C -0.001 4.001 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.708 3.292 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.188 1.188 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.237 0.763 37 H 0.244 0.756 38 H 0.257 0.743 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.676 -12.160 -21.184 25.921 hybrid contribution -1.055 1.457 -0.195 1.810 sum 7.620 -10.703 -21.379 25.094 Atomic orbital electron populations 1.22303 0.93754 1.03405 1.03197 1.21816 0.95237 0.93756 0.84957 1.22304 1.02319 0.94840 1.03198 1.21616 0.98119 0.94584 0.83741 1.86356 1.77581 1.57282 1.15804 1.90533 1.71501 1.45818 1.03917 1.45961 1.57515 1.32011 0.96042 1.15246 0.81374 0.83482 0.78557 1.91056 1.38441 1.24343 1.84504 1.42144 1.54297 1.32361 1.01841 1.17348 0.96596 0.92438 0.82015 1.67608 1.10264 1.07290 1.30433 1.22439 0.99142 0.99540 0.86551 1.21923 0.99655 0.96919 0.99647 1.21618 1.00285 0.97617 0.97466 1.19437 0.95941 0.90340 0.92828 1.86042 1.63155 1.38537 1.35651 1.23144 0.98724 0.96865 0.81323 1.19584 0.94561 0.91424 0.98933 1.20811 1.32358 1.12144 0.91377 0.90701 1.24939 0.95277 0.96511 0.96275 1.69886 1.36286 1.23119 1.24031 0.86752 0.79651 0.78771 0.84021 1.20063 1.21156 1.18826 0.92226 0.90091 0.91444 0.91442 0.90097 0.92220 0.92132 0.92130 0.76313 0.75581 0.74267 0.82472 0.84604 0.83492 0.92263 0.92284 0.95394 0.95831 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 8.37 37.16 0.31 -1.03 16 2 C 0.08 0.72 0.96 -90.62 -0.09 0.63 16 3 C -0.17 -1.34 8.37 37.16 0.31 -1.03 16 4 C 0.10 0.69 6.28 37.15 0.23 0.92 16 5 O -0.56 -3.34 12.31 -35.23 -0.43 -3.78 16 6 O -0.11 -1.37 10.63 -29.61 -0.31 -1.69 16 7 N -0.61 -7.13 5.60 27.63 0.15 -6.97 16 8 C 0.71 10.81 8.68 -86.92 -0.75 10.06 16 9 O -0.51 -9.92 15.00 -12.86 -0.19 -10.11 16 10 N -0.65 -9.20 5.40 -15.67 -0.08 -9.29 16 11 C 0.35 5.59 7.45 -154.43 -1.15 4.44 16 12 N -0.44 -7.31 7.87 -12.22 -0.10 -7.41 16 13 C 0.08 1.06 11.17 -17.56 -0.20 0.86 16 14 C -0.16 -1.91 10.10 -39.44 -0.40 -2.31 16 15 C -0.14 -1.98 9.14 -39.17 -0.36 -2.33 16 16 C 0.07 1.03 6.72 -38.92 -0.26 0.77 16 17 O -0.32 -5.40 9.39 -19.69 -0.18 -5.58 16 18 C 0.07 1.35 4.70 37.16 0.17 1.52 16 19 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 20 C -0.53 -14.10 9.66 -34.44 -0.33 -14.43 16 21 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 22 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 23 N -0.90 -26.30 13.96 55.43 0.77 -25.53 16 24 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 28 H 0.06 0.44 6.96 -51.93 -0.36 0.08 16 29 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.61 7.68 -51.93 -0.40 0.21 16 33 H 0.06 0.44 6.96 -51.93 -0.36 0.08 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.39 0.57 9.12 45.56 0.42 0.99 16 37 H 0.40 3.47 6.44 -40.82 -0.26 3.21 16 38 H 0.42 4.90 8.06 -40.82 -0.33 4.57 16 39 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.15 1.88 6.44 -52.49 -0.34 1.54 16 42 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 43 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 44 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 45 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -35.50 384.34 -7.71 -43.21 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.72 Total: 5.85 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.73 Total: -0.30 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.75 Total: -49.19 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.13 Total: -21.16 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.50 -7.71 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670966800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.140 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds