Wall clock time and date at job start Tue Mar 31 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 C 1.52994 * 109.47393 * 239.99454 * 2 1 3 5 5 O 1.42905 * 109.46862 * 59.99935 * 4 2 1 6 6 O 1.42898 * 109.46677 * 119.99519 * 2 1 3 7 7 N 1.41596 * 114.00454 * 299.99711 * 6 2 1 8 8 C 1.34775 * 120.00349 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 6 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.08999 * 109.47479 * 300.00378 * 1 2 3 29 29 H 1.09000 * 109.46775 * 60.00476 * 1 2 3 30 30 H 1.08997 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47004 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46657 * 300.00067 * 3 2 1 33 33 H 1.08999 * 109.47262 * 59.99489 * 3 2 1 34 34 H 1.08999 * 109.47636 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.47006 * 300.00418 * 4 2 1 36 36 H 0.96700 * 113.99960 * 180.02562 * 5 4 2 37 37 H 0.97000 * 119.99869 * 0.02562 * 7 6 2 38 38 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 39 39 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 40 40 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 1.5637 -0.0478 -2.4160 6 8 2.0062 -0.6735 1.1668 7 7 1.5885 -0.0826 2.3839 8 6 1.9692 -0.6202 3.5597 9 8 2.6711 -1.6129 3.5754 10 7 1.5711 -0.0579 4.7181 11 6 1.9650 -0.6150 5.9359 12 7 2.7333 -1.6916 5.9467 13 6 3.1242 -2.2531 7.0751 14 6 2.7474 -1.7303 8.2963 15 6 1.9463 -0.5975 8.3333 16 6 1.5511 -0.0276 7.1312 17 8 0.7658 1.0825 7.1189 18 6 0.3792 1.6177 8.3863 19 6 -0.4944 2.8554 8.1721 20 6 -0.9025 3.4195 9.5086 21 1 -0.5722 2.9427 10.4196 22 6 -1.6985 4.5437 9.5684 23 7 -2.0551 5.0357 10.7348 24 14 -2.2704 5.3681 7.9927 25 1 -3.5647 4.7778 7.5669 26 1 -2.4443 6.8235 8.2304 27 1 -1.2566 5.1581 6.9281 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1301 -0.7210 -1.2494 35 1 1.6767 -1.7490 -1.2490 36 1 1.8487 -0.4516 -3.2471 37 1 1.0283 0.7092 2.3714 38 1 1.0109 0.7338 4.7056 39 1 3.7481 -3.1341 7.0431 40 1 3.0728 -2.1983 9.2136 41 1 1.6383 -0.1691 9.2756 42 1 1.2697 1.8951 8.9505 43 1 -0.1835 0.8671 8.9414 44 1 0.0686 3.6058 7.6172 45 1 -1.3848 2.5784 7.6078 46 1 -2.6148 5.8269 10.7768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670966800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:16 Heat of formation + Delta-G solvation = -81.253746 kcal Electronic energy + Delta-G solvation = -29127.908209 eV Core-core repulsion = 24827.474996 eV Total energy + Delta-G solvation = -4300.433212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09973 -40.82971 -39.82303 -39.07485 -37.52178 -35.99103 -35.37822 -34.36644 -33.05643 -32.76881 -31.97677 -30.11879 -28.42137 -27.39415 -27.28884 -25.00041 -24.00009 -22.74093 -21.97191 -21.71729 -20.04638 -19.50216 -19.21726 -18.62608 -18.25253 -17.59391 -17.31522 -17.26432 -16.81067 -16.31529 -16.25247 -16.19057 -15.79764 -15.36544 -15.22794 -15.21819 -14.82776 -14.73209 -14.68255 -14.10136 -13.77510 -13.71736 -13.31991 -13.26448 -13.02090 -12.92973 -12.83305 -12.69556 -12.17384 -12.09731 -11.87737 -11.81608 -11.71357 -11.68217 -11.62415 -11.43702 -11.01911 -10.78816 -10.43648 -10.27594 -10.04746 -8.85954 -8.31732 -6.38378 0.13973 0.28158 0.30588 1.39007 1.40727 1.52056 1.99937 2.10436 2.26563 2.35605 2.90510 3.04043 3.08106 3.52636 3.54675 3.62827 3.80097 3.86588 3.92278 3.95933 4.13713 4.27891 4.32738 4.43549 4.47171 4.48617 4.56694 4.66373 4.70489 4.78744 4.84480 4.93914 5.07287 5.12562 5.15264 5.17928 5.23267 5.35502 5.36266 5.52038 5.61211 5.84812 6.18576 6.29350 6.55585 6.68579 6.79827 7.11598 7.26827 7.45569 8.83787 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.002763 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.304569 B =10129.647091 C =12979.271948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 C -0.166 4.166 4 C 0.103 3.897 5 O -0.572 6.572 6 O -0.134 6.134 7 N -0.594 5.594 8 C 0.714 3.286 9 O -0.561 6.561 10 N -0.646 5.646 11 C 0.333 3.667 12 N -0.474 5.474 13 C 0.077 3.923 14 C -0.145 4.145 15 C -0.146 4.146 16 C 0.048 3.952 17 O -0.323 6.323 18 C 0.086 3.914 19 C -0.006 4.006 20 C -0.535 4.535 21 H 0.042 0.958 22 C 0.011 3.989 23 N -0.945 5.945 24 Si 0.948 3.052 25 H -0.266 1.266 26 H -0.286 1.286 27 H -0.243 1.243 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.419 0.581 38 H 0.429 0.571 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -11.691 -22.208 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 C -0.223 4.223 4 C 0.023 3.977 5 O -0.381 6.381 6 O -0.139 6.139 7 N -0.300 5.300 8 C 0.413 3.587 9 O -0.434 6.434 10 N -0.301 5.301 11 C 0.101 3.899 12 N -0.189 5.189 13 C -0.079 4.079 14 C -0.166 4.166 15 C -0.173 4.173 16 C -0.003 4.003 17 O -0.237 6.237 18 C 0.011 3.989 19 C -0.043 4.043 20 C -0.572 4.572 21 H 0.061 0.939 22 C -0.187 4.187 23 N -0.584 5.584 24 Si 0.771 3.229 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.167 1.167 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.259 0.741 37 H 0.262 0.738 38 H 0.268 0.732 39 H 0.202 0.798 40 H 0.192 0.808 41 H 0.174 0.826 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.897 -12.471 -22.780 27.452 hybrid contribution -1.055 1.453 0.314 1.823 sum 7.842 -11.018 -22.466 26.223 Atomic orbital electron populations 1.22274 0.93143 1.03187 1.03712 1.22081 0.95810 0.94228 0.84383 1.22275 1.01926 0.94407 1.03711 1.21531 0.98172 0.94460 0.83537 1.86309 1.77740 1.57631 1.16447 1.90531 1.72068 1.46854 1.04496 1.45688 1.56803 1.31929 0.95593 1.15361 0.80959 0.83063 0.79277 1.91013 1.40614 1.26419 1.85325 1.42072 1.54171 1.32481 1.01355 1.17497 0.97122 0.92781 0.82548 1.67648 1.11137 1.07950 1.32203 1.23027 0.98672 0.99957 0.86294 1.22283 0.97868 0.95701 1.00699 1.21890 1.00163 0.98067 0.97141 1.19515 0.96853 0.90435 0.93543 1.85967 1.63943 1.39411 1.34352 1.22768 0.98358 0.95675 0.82076 1.19440 0.95530 0.93030 0.96340 1.21132 1.31733 1.11951 0.92434 0.93926 1.25901 0.95591 0.97431 0.99799 1.70034 1.37709 1.24041 1.26647 0.85686 0.79807 0.77371 0.79996 1.19134 1.21156 1.16656 0.91814 0.89432 0.92025 0.92028 0.89435 0.91814 0.91935 0.91929 0.74066 0.73784 0.73151 0.79798 0.80807 0.82614 0.91908 0.91893 0.95058 0.95183 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 8.37 71.98 0.60 -1.81 16 2 C 0.07 1.22 0.96 -10.79 -0.01 1.21 16 3 C -0.17 -2.42 8.37 71.98 0.60 -1.81 16 4 C 0.10 1.32 6.28 71.98 0.45 1.77 16 5 O -0.57 -5.81 12.31 -148.98 -1.83 -7.64 16 6 O -0.13 -3.20 10.63 -21.43 -0.23 -3.43 16 7 N -0.59 -13.53 5.60 -184.75 -1.03 -14.57 16 8 C 0.71 21.53 8.68 179.06 1.55 23.08 16 9 O -0.56 -21.87 15.00 13.35 0.20 -21.67 16 10 N -0.65 -17.93 5.40 -321.76 -1.74 -19.66 16 11 C 0.33 10.44 7.45 132.98 0.99 11.43 16 12 N -0.47 -15.36 7.87 -192.58 -1.52 -16.88 16 13 C 0.08 1.89 11.17 84.63 0.95 2.83 16 14 C -0.14 -3.03 10.10 22.36 0.23 -2.81 16 15 C -0.15 -3.74 9.14 22.53 0.21 -3.53 16 16 C 0.05 1.43 6.72 22.70 0.15 1.58 16 17 O -0.32 -10.46 9.39 -93.36 -0.88 -11.33 16 18 C 0.09 3.05 4.70 71.98 0.34 3.39 16 19 C -0.01 -0.25 4.41 29.85 0.13 -0.12 16 20 C -0.53 -28.64 9.66 25.60 0.25 -28.39 16 21 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 22 C 0.01 0.59 5.47 84.65 0.46 1.05 16 23 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 24 Si 0.95 41.54 27.47 68.60 1.88 43.43 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 28 H 0.06 0.85 6.96 -2.39 -0.02 0.83 16 29 H 0.09 1.16 7.68 -2.39 -0.02 1.15 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.17 7.68 -2.38 -0.02 1.15 16 33 H 0.06 0.85 6.96 -2.39 -0.02 0.83 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.41 0.46 9.12 -74.06 -0.68 -0.22 16 37 H 0.42 6.73 6.44 -92.71 -0.60 6.14 16 38 H 0.43 9.66 8.06 -92.71 -0.75 8.91 16 39 H 0.19 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.16 3.67 6.44 -2.91 -0.02 3.65 16 42 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 43 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 44 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 45 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 46 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -77.55 384.34 1.03 -76.52 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -1.03 Total: 23.55 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.90 Total: 7.86 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.99 Total: -107.29 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.74 Total: -44.07 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.43 kcal Total: -77.55 1.03 -76.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670966800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.731 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds