Wall clock time and date at job start Wed Apr 1 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45769 * 2 1 4 4 C 1.53042 * 109.46042 * 240.04596 * 2 1 3 5 5 C 1.53624 * 109.24319 * 178.48918 * 4 2 1 6 6 N 1.46929 * 108.54224 * 54.85187 * 5 4 2 7 7 C 1.34777 * 120.62579 * 126.36713 * 6 5 4 8 8 O 1.21552 * 119.99621 * 185.83855 * 7 6 5 9 9 C 1.47876 * 120.00048 * 5.84210 * 7 6 5 10 10 N 1.32841 * 119.72344 * 37.22610 * 9 7 6 11 11 C 1.31369 * 121.68777 * 179.72118 * 10 9 7 12 12 C 1.39002 * 120.93747 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.33281 * 179.97438 * 12 11 10 14 14 C 1.38723 * 119.33585 * 359.97438 * 12 11 10 15 15 C 1.38832 * 118.45476 * 0.02562 * 14 12 11 16 16 F 1.35091 * 120.48637 * 179.97438 * 15 14 12 17 17 C 1.46921 * 118.73807 * 306.09594 * 6 5 4 18 18 H 1.08994 * 109.59129 * 293.92600 * 17 6 5 19 19 C 1.53003 * 109.58505 * 173.64515 * 17 6 5 20 20 N 1.46503 * 109.47155 * 69.53737 * 19 17 6 21 21 C 1.36934 * 120.00197 * 174.61638 * 20 19 17 22 22 H 1.07995 * 119.99965 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99915 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00071 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00024 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47038 * 59.99916 * 25 23 21 27 27 H 1.48494 * 109.47206 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47271 * 300.00217 * 25 23 21 29 29 C 1.53035 * 109.46120 * 119.97323 * 2 1 3 30 30 H 1.08998 * 109.47200 * 300.02549 * 1 2 3 31 31 H 1.09004 * 109.47738 * 60.02394 * 1 2 3 32 32 H 1.09006 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49706 * 298.56568 * 4 2 1 34 34 H 1.08997 * 109.49853 * 58.62865 * 4 2 1 35 35 H 1.09003 * 109.73681 * 295.12038 * 5 4 2 36 36 H 1.08994 * 109.66058 * 174.54792 * 5 4 2 37 37 H 1.07998 * 119.53057 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.76813 * 179.97438 * 14 12 11 39 39 H 1.09005 * 109.47415 * 189.53633 * 19 17 6 40 40 H 1.09001 * 109.47197 * 309.53695 * 19 17 6 41 41 H 0.97002 * 119.99607 * 354.61488 * 20 19 17 42 42 H 0.96997 * 119.99676 * 179.97438 * 24 23 21 43 43 H 1.09001 * 109.49831 * 61.43685 * 29 2 1 44 44 H 1.09001 * 109.52466 * 301.35703 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7205 -1.2502 5 6 3.5756 -0.6845 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9621 -2.2571 -0.0005 8 8 5.2816 -2.7862 1.0461 9 6 5.5546 -2.7196 -1.2740 10 7 5.8464 -1.8375 -2.2234 11 6 6.3785 -2.2051 -3.3669 12 6 6.6577 -3.5415 -3.6283 13 9 7.2046 -3.9059 -4.8088 14 6 6.3693 -4.4971 -2.6651 15 6 5.8074 -4.0794 -1.4663 16 9 5.5096 -4.9753 -0.5000 17 6 3.5714 -0.6887 1.2640 18 1 3.9164 0.3400 1.3686 19 6 4.0912 -1.5254 2.4348 20 7 5.5356 -1.3250 2.5749 21 6 6.2061 -1.8881 3.6278 22 1 5.6700 -2.4795 4.3552 23 6 7.5747 -1.6977 3.7607 24 7 8.2280 -0.9765 2.8745 25 14 8.4891 -2.4652 5.1974 26 1 8.3351 -3.9415 5.1504 27 1 9.9297 -2.1154 5.1109 28 1 7.9296 -1.9495 6.4727 29 6 2.0398 -0.7209 1.2499 30 1 -0.3633 0.5142 0.8897 31 1 -0.3635 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7554 -1.2387 34 1 1.6567 -0.2207 -2.1399 35 1 3.9188 0.3453 -1.3631 36 1 3.9486 -1.2778 -2.0992 37 1 6.6013 -1.4585 -4.1147 38 1 6.5764 -5.5419 -2.8440 39 1 3.5908 -1.2164 3.3527 40 1 3.8871 -2.5795 2.2469 41 1 6.0171 -0.7935 1.9217 42 1 9.1842 -0.8433 2.9677 43 1 1.6979 -1.7558 1.2380 44 1 1.6572 -0.2215 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692075238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:20 Heat of formation + Delta-G solvation = -28.733611 kcal Electronic energy + Delta-G solvation = -31018.340803 eV Core-core repulsion = 26609.097519 eV Total energy + Delta-G solvation = -4409.243284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.27661 -48.94888 -40.65893 -39.39897 -37.24590 -34.55376 -33.71709 -32.55005 -31.98763 -30.70030 -29.83260 -28.17739 -25.52470 -24.78846 -23.92650 -23.13590 -22.67842 -21.64155 -20.08699 -19.45574 -18.29262 -18.15821 -17.32335 -16.67117 -16.37215 -15.98541 -15.57053 -15.34679 -15.25741 -14.91724 -14.61703 -14.52110 -14.42195 -14.00956 -13.58893 -13.45893 -13.40174 -13.30563 -12.93163 -12.68472 -12.66731 -12.47294 -12.17539 -11.88633 -11.65404 -11.55635 -10.99949 -10.87054 -10.72826 -10.70923 -10.48045 -10.28234 -10.05422 -9.93983 -9.79678 -9.55650 -9.00939 -8.82608 -8.44527 -8.06744 -6.58759 -5.62726 -2.76874 0.35612 0.73414 2.87477 3.22085 3.50750 3.54715 3.56649 3.58267 3.64252 3.93323 4.24685 4.40618 4.48435 4.68585 4.78361 4.83590 4.89294 4.94727 5.20841 5.28883 5.39442 5.47320 5.54683 5.58712 5.59102 5.62170 5.70564 5.75056 5.80168 5.95356 5.99392 6.09663 6.12418 6.14223 6.19023 6.33027 6.41603 6.53320 6.67544 6.92392 7.28368 7.43551 7.81600 7.89441 8.55234 8.79054 9.66058 10.25370 10.59448 11.60172 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007643 B = 0.005609 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.371640 B = 4991.001731 C = 7781.369632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.131 4.131 5 C 0.116 3.884 6 N -0.598 5.598 7 C 0.523 3.477 8 O -0.423 6.423 9 C 0.062 3.938 10 N -0.399 5.399 11 C 0.061 3.939 12 C 0.081 3.919 13 F -0.123 7.123 14 C -0.154 4.154 15 C 0.127 3.873 16 F -0.102 7.102 17 C 0.144 3.856 18 H 0.072 0.928 19 C 0.154 3.846 20 N -0.690 5.690 21 C -0.205 4.205 22 H 0.068 0.932 23 C -0.022 4.022 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.288 1.288 29 C -0.120 4.120 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.019 0.981 40 H 0.045 0.955 41 H 0.381 0.619 42 H 0.253 0.747 43 H 0.066 0.934 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.511 -0.823 -16.192 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.090 0.910 4 C -0.169 4.169 5 C -0.008 4.008 6 N -0.335 5.335 7 C 0.306 3.694 8 O -0.289 6.289 9 C -0.078 4.078 10 N -0.110 5.110 11 C -0.101 4.101 12 C 0.058 3.942 13 F -0.102 7.102 14 C -0.181 4.181 15 C 0.104 3.896 16 F -0.080 7.080 17 C 0.041 3.959 18 H 0.090 0.910 19 C 0.027 3.973 20 N -0.332 5.332 21 C -0.337 4.337 22 H 0.086 0.914 23 C -0.217 4.217 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.215 1.215 27 H -0.219 1.219 28 H -0.215 1.215 29 C -0.159 4.159 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.215 0.785 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.451 -0.401 -15.165 19.625 hybrid contribution 1.204 -1.363 0.071 1.820 sum -11.247 -1.764 -15.094 18.906 Atomic orbital electron populations 1.21816 0.95338 1.01631 1.01414 1.21117 0.95299 0.99694 0.94952 0.91024 1.22114 0.95983 1.00964 0.97840 1.21831 0.92660 0.99668 0.86612 1.47513 1.44005 1.35414 1.06585 1.17525 0.81810 0.83609 0.86464 1.91240 1.57627 1.52230 1.27792 1.21877 1.01068 0.88607 0.96215 1.67994 1.08175 1.35325 0.99512 1.23062 0.98171 0.93019 0.95851 1.18651 0.98804 0.93983 0.82756 1.91545 1.82786 1.92307 1.43534 1.21579 1.01971 1.02159 0.92430 1.18283 0.97994 0.87110 0.86248 1.91633 1.89920 1.65862 1.60622 1.21533 0.92621 0.98031 0.83706 0.91040 1.21012 0.86634 0.97503 0.92146 1.42384 1.01946 1.59444 1.29383 1.19192 0.90590 1.23298 1.00650 0.91415 1.24670 0.96486 1.01518 0.99020 1.69657 1.07906 1.44013 1.36473 0.86274 0.78879 0.78995 0.82183 1.21474 1.21885 1.21460 1.21968 0.95040 1.01230 0.97698 0.92697 0.92945 0.92854 0.91881 0.91267 0.91579 0.89372 0.80563 0.82054 0.96298 0.93729 0.78530 0.93764 0.91498 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.09 -0.97 2.68 -90.58 -0.24 -1.21 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.36 5.38 -26.39 -0.14 -1.50 16 5 C 0.12 1.48 5.85 -3.48 -0.02 1.46 16 6 N -0.60 -9.98 2.97 -166.05 -0.49 -10.47 16 7 C 0.52 10.36 6.73 -12.32 -0.08 10.28 16 8 O -0.42 -10.29 9.96 5.32 0.05 -10.23 16 9 C 0.06 1.06 5.85 -82.96 -0.49 0.58 16 10 N -0.40 -5.82 7.58 -9.70 -0.07 -5.90 16 11 C 0.06 0.69 11.17 -17.47 -0.20 0.50 16 12 C 0.08 0.91 7.35 -39.12 -0.29 0.62 16 13 F -0.12 -1.29 17.28 2.25 0.04 -1.25 16 14 C -0.15 -1.88 10.14 -39.18 -0.40 -2.27 16 15 C 0.13 2.00 7.27 -38.84 -0.28 1.72 16 16 F -0.10 -1.82 16.16 2.25 0.04 -1.78 16 17 C 0.14 2.43 2.93 -67.60 -0.20 2.24 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 19 C 0.15 3.31 4.87 -4.04 -0.02 3.29 16 20 N -0.69 -18.40 3.24 -59.90 -0.19 -18.59 16 21 C -0.21 -6.05 9.74 -15.06 -0.15 -6.20 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 24 N -0.93 -29.47 13.06 55.49 0.72 -28.74 16 25 Si 0.90 23.63 29.55 -169.99 -5.02 18.60 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C -0.12 -1.56 4.64 -26.61 -0.12 -1.68 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.11 5.05 -51.93 -0.26 0.85 16 37 H 0.18 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.02 0.41 8.13 -51.93 -0.42 -0.02 16 40 H 0.05 1.04 6.29 -51.93 -0.33 0.71 16 41 H 0.38 10.89 7.06 -40.82 -0.29 10.60 16 42 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -34.05 360.60 -7.79 -41.85 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.92 Total: 4.95 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.38 Total: 6.14 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.04 Total: -63.71 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.05 Total: -10.23 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.05 -7.79 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692075238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.113 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds