Wall clock time and date at job start Wed Apr 1 2020 00:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45769 * 2 1 4 4 C 1.53042 * 109.46042 * 240.04596 * 2 1 3 5 5 C 1.53624 * 109.24319 * 178.48918 * 4 2 1 6 6 N 1.46929 * 108.54224 * 54.85187 * 5 4 2 7 7 C 1.34777 * 120.62579 * 126.36713 * 6 5 4 8 8 O 1.21552 * 119.99621 * 185.83855 * 7 6 5 9 9 C 1.47876 * 120.00048 * 5.84210 * 7 6 5 10 10 N 1.32841 * 119.72344 * 37.22610 * 9 7 6 11 11 C 1.31369 * 121.68777 * 179.72118 * 10 9 7 12 12 C 1.39002 * 120.93747 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.33281 * 179.97438 * 12 11 10 14 14 C 1.38723 * 119.33585 * 359.97438 * 12 11 10 15 15 C 1.38832 * 118.45476 * 0.02562 * 14 12 11 16 16 F 1.35091 * 120.48637 * 179.97438 * 15 14 12 17 17 C 1.46921 * 118.73807 * 306.09594 * 6 5 4 18 18 H 1.08994 * 109.59129 * 293.92600 * 17 6 5 19 19 C 1.53003 * 109.58505 * 173.64515 * 17 6 5 20 20 N 1.46503 * 109.47155 * 69.53737 * 19 17 6 21 21 C 1.36934 * 120.00197 * 174.61638 * 20 19 17 22 22 H 1.07995 * 119.99965 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99915 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00071 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00024 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47038 * 59.99916 * 25 23 21 27 27 H 1.48494 * 109.47206 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47271 * 300.00217 * 25 23 21 29 29 C 1.53035 * 109.46120 * 119.97323 * 2 1 3 30 30 H 1.08998 * 109.47200 * 300.02549 * 1 2 3 31 31 H 1.09004 * 109.47738 * 60.02394 * 1 2 3 32 32 H 1.09006 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49706 * 298.56568 * 4 2 1 34 34 H 1.08997 * 109.49853 * 58.62865 * 4 2 1 35 35 H 1.09003 * 109.73681 * 295.12038 * 5 4 2 36 36 H 1.08994 * 109.66058 * 174.54792 * 5 4 2 37 37 H 1.07998 * 119.53057 * 179.97438 * 11 10 9 38 38 H 1.08002 * 120.76813 * 179.97438 * 14 12 11 39 39 H 1.09005 * 109.47415 * 189.53633 * 19 17 6 40 40 H 1.09001 * 109.47197 * 309.53695 * 19 17 6 41 41 H 0.97002 * 119.99607 * 354.61488 * 20 19 17 42 42 H 0.96997 * 119.99676 * 179.97438 * 24 23 21 43 43 H 1.09001 * 109.49831 * 61.43685 * 29 2 1 44 44 H 1.09001 * 109.52466 * 301.35703 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7205 -1.2502 5 6 3.5756 -0.6845 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9621 -2.2571 -0.0005 8 8 5.2816 -2.7862 1.0461 9 6 5.5546 -2.7196 -1.2740 10 7 5.8464 -1.8375 -2.2234 11 6 6.3785 -2.2051 -3.3669 12 6 6.6577 -3.5415 -3.6283 13 9 7.2046 -3.9059 -4.8088 14 6 6.3693 -4.4971 -2.6651 15 6 5.8074 -4.0794 -1.4663 16 9 5.5096 -4.9753 -0.5000 17 6 3.5714 -0.6887 1.2640 18 1 3.9164 0.3400 1.3686 19 6 4.0912 -1.5254 2.4348 20 7 5.5356 -1.3250 2.5749 21 6 6.2061 -1.8881 3.6278 22 1 5.6700 -2.4795 4.3552 23 6 7.5747 -1.6977 3.7607 24 7 8.2280 -0.9765 2.8745 25 14 8.4891 -2.4652 5.1974 26 1 8.3351 -3.9415 5.1504 27 1 9.9297 -2.1154 5.1109 28 1 7.9296 -1.9495 6.4727 29 6 2.0398 -0.7209 1.2499 30 1 -0.3633 0.5142 0.8897 31 1 -0.3635 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7554 -1.2387 34 1 1.6567 -0.2207 -2.1399 35 1 3.9188 0.3453 -1.3631 36 1 3.9486 -1.2778 -2.0992 37 1 6.6013 -1.4585 -4.1147 38 1 6.5764 -5.5419 -2.8440 39 1 3.5908 -1.2164 3.3527 40 1 3.8871 -2.5795 2.2469 41 1 6.0171 -0.7935 1.9217 42 1 9.1842 -0.8433 2.9677 43 1 1.6979 -1.7558 1.2380 44 1 1.6572 -0.2215 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692075238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:20 Heat of formation + Delta-G solvation = -50.866900 kcal Electronic energy + Delta-G solvation = -31019.300575 eV Core-core repulsion = 26609.097519 eV Total energy + Delta-G solvation = -4410.203056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.25882 -50.22670 -41.95981 -40.62419 -38.52502 -36.38982 -34.90702 -33.98888 -33.41471 -31.93085 -31.49955 -29.22978 -27.17188 -26.03385 -25.07054 -24.48277 -24.14374 -23.05246 -21.29897 -20.61535 -19.44064 -19.39148 -19.04436 -18.16594 -17.51808 -17.11536 -16.84063 -16.67793 -16.54293 -16.49825 -16.00189 -15.66981 -15.57536 -15.35818 -15.00360 -14.90492 -14.61552 -14.54916 -14.45489 -14.01695 -13.85514 -13.73005 -13.56568 -13.14634 -12.82328 -12.79066 -12.67348 -12.54788 -12.18490 -12.07558 -11.86627 -11.70435 -11.42556 -11.26559 -11.13702 -10.92652 -10.89468 -10.24029 -9.98061 -9.50000 -8.66946 -7.85846 -5.05441 -0.76247 -0.33332 1.41551 1.46382 1.51928 1.62432 1.91929 2.27851 2.50705 2.60189 2.79280 3.07481 3.36637 3.42543 3.47869 3.72661 3.79790 3.87836 3.92506 4.09821 4.21752 4.30022 4.35295 4.38942 4.47877 4.55789 4.59850 4.73348 4.80912 4.87248 4.94046 5.01181 5.03429 5.13069 5.15223 5.22609 5.27667 5.34189 5.44550 5.51231 5.58528 5.80954 6.30410 6.34971 6.50957 7.31727 7.41520 8.19763 8.42932 9.38649 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007643 B = 0.005609 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.371640 B = 4991.001731 C = 7781.369632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.110 3.890 6 N -0.593 5.593 7 C 0.524 3.476 8 O -0.485 6.485 9 C 0.036 3.964 10 N -0.408 5.408 11 C 0.075 3.925 12 C 0.108 3.892 13 F -0.108 7.108 14 C -0.143 4.143 15 C 0.107 3.893 16 F -0.122 7.122 17 C 0.148 3.852 18 H 0.066 0.934 19 C 0.160 3.840 20 N -0.705 5.705 21 C -0.212 4.212 22 H 0.063 0.937 23 C -0.084 4.084 24 N -0.974 5.974 25 Si 0.968 3.032 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.275 1.275 29 C -0.111 4.111 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.221 0.779 38 H 0.191 0.809 39 H 0.019 0.981 40 H 0.024 0.976 41 H 0.366 0.634 42 H 0.245 0.755 43 H 0.060 0.940 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -0.507 -19.539 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.011 4.011 6 N -0.328 5.328 7 C 0.308 3.692 8 O -0.356 6.356 9 C -0.102 4.102 10 N -0.119 5.119 11 C -0.088 4.088 12 C 0.085 3.915 13 F -0.087 7.087 14 C -0.169 4.169 15 C 0.084 3.916 16 F -0.101 7.101 17 C 0.045 3.955 18 H 0.084 0.916 19 C 0.033 3.967 20 N -0.346 5.346 21 C -0.345 4.345 22 H 0.081 0.919 23 C -0.275 4.275 24 N -0.627 5.627 25 Si 0.798 3.202 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.201 1.201 29 C -0.150 4.150 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.237 0.763 38 H 0.209 0.791 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.198 0.802 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.856 -0.085 -18.570 23.169 hybrid contribution 1.529 -1.552 0.667 2.279 sum -12.326 -1.637 -17.903 21.797 Atomic orbital electron populations 1.21759 0.93404 1.01943 1.02525 1.21108 0.96781 0.99423 0.93343 0.90479 1.22085 0.93701 1.01150 0.99127 1.22121 0.94581 0.99729 0.84711 1.47748 1.42780 1.34297 1.08017 1.18152 0.81078 0.82896 0.87026 1.91227 1.59461 1.54861 1.30077 1.21549 1.03046 0.89560 0.96008 1.67980 1.08930 1.34887 1.00078 1.23768 0.95701 0.94143 0.95154 1.18625 0.96642 0.93686 0.82501 1.91604 1.82222 1.92193 1.42634 1.21832 1.00240 1.04006 0.90846 1.18562 0.99193 0.86590 0.87207 1.91582 1.90376 1.66349 1.61765 1.21450 0.95250 0.96390 0.82421 0.91623 1.20991 0.84404 0.97120 0.94167 1.42344 1.03535 1.59955 1.28734 1.19457 0.91147 1.22730 1.01186 0.91895 1.25393 0.97298 1.02950 1.01868 1.69824 1.07404 1.46724 1.38737 0.85278 0.77357 0.77862 0.79746 1.21532 1.22062 1.20150 1.21919 0.91561 1.01550 0.99974 0.92306 0.91186 0.92948 0.92365 0.88110 0.90850 0.88820 0.76308 0.79150 0.96319 0.95847 0.80224 0.94647 0.92134 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.09 -1.64 2.68 -10.77 -0.03 -1.67 16 3 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.12 -2.21 5.38 30.82 0.17 -2.05 16 5 C 0.11 2.65 5.85 86.51 0.51 3.15 16 6 N -0.59 -20.13 2.97 -797.54 -2.37 -22.49 16 7 C 0.52 21.68 6.73 86.80 0.58 22.26 16 8 O -0.49 -25.26 9.96 -3.88 -0.04 -25.30 16 9 C 0.04 1.24 5.85 41.88 0.25 1.48 16 10 N -0.41 -11.17 7.58 -184.61 -1.40 -12.57 16 11 C 0.07 1.41 11.17 84.95 0.95 2.36 16 12 C 0.11 1.99 7.35 22.57 0.17 2.15 16 13 F -0.11 -1.74 17.28 44.97 0.78 -0.96 16 14 C -0.14 -3.10 10.14 22.53 0.23 -2.87 16 15 C 0.11 3.37 7.27 22.75 0.17 3.53 16 16 F -0.12 -4.54 16.16 44.97 0.73 -3.81 16 17 C 0.15 5.15 2.93 44.98 0.13 5.28 16 18 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 19 C 0.16 7.29 4.87 86.38 0.42 7.71 16 20 N -0.71 -40.02 3.24 -343.44 -1.11 -41.13 16 21 C -0.21 -13.22 9.74 84.03 0.82 -12.41 16 22 H 0.06 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.08 -5.32 5.50 84.86 0.47 -4.85 16 24 N -0.97 -64.74 13.06 21.65 0.28 -64.46 16 25 Si 0.97 50.75 29.55 68.60 2.03 52.78 16 26 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 27 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 28 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 29 C -0.11 -2.81 4.64 30.67 0.14 -2.67 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.76 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 2.17 5.05 -2.39 -0.01 2.15 16 37 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.02 0.85 8.13 -2.38 -0.02 0.83 16 40 H 0.02 1.19 6.29 -2.39 -0.02 1.17 16 41 H 0.37 22.32 7.06 -92.71 -0.65 21.67 16 42 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -81.10 360.60 4.91 -76.19 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.39 Total: 21.67 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 5.62 Total: 20.08 kcal Atomic # 7 Polarization: -136.06 SS G_CDS: -4.59 Total: -140.65 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.30 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 1.50 Total: -4.78 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.03 Total: 52.78 kcal Total: -81.10 4.91 -76.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692075238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.327 kcal (2) G-P(sol) polarization free energy of solvation -81.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds