Wall clock time and date at job start Tue Mar 31 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47581 * 2 1 4 4 N 1.46494 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00405 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99704 * 0.02562 * 5 4 3 7 7 C 1.38807 * 120.00179 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00377 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47191 * 89.99861 * 9 7 5 11 11 H 1.48503 * 109.47123 * 210.00159 * 9 7 5 12 12 H 1.48504 * 109.46902 * 330.00010 * 9 7 5 13 13 N 1.46506 * 109.46541 * 119.99919 * 2 1 3 14 14 C 1.34773 * 120.00049 * 295.77545 * 13 2 1 15 15 O 1.21554 * 120.00159 * 5.00913 * 14 13 2 16 16 C 1.47843 * 119.99948 * 185.00639 * 14 13 2 17 17 C 1.40025 * 120.55884 * 180.02562 * 16 14 13 18 18 C 1.38356 * 118.28764 * 179.97438 * 17 16 14 19 19 C 1.38351 * 119.30661 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.46153 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47037 * 209.99405 * 20 19 18 22 22 F 1.39889 * 109.47182 * 329.99912 * 20 19 18 23 23 N 1.31933 * 121.07555 * 359.97087 * 19 18 17 24 24 C 1.31690 * 121.88232 * 359.78221 * 23 19 18 25 25 C 1.52994 * 109.47155 * 239.99352 * 2 1 3 26 26 C 1.53002 * 117.49805 * 12.84472 * 25 2 1 27 27 C 1.52995 * 117.50148 * 304.18486 * 25 2 1 28 28 H 1.08997 * 109.46759 * 59.99976 * 1 2 3 29 29 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46837 * 300.00273 * 1 2 3 31 31 H 1.08997 * 109.47093 * 299.99819 * 3 2 1 32 32 H 1.09005 * 109.46956 * 59.99566 * 3 2 1 33 33 H 0.97009 * 120.00244 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00317 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99705 * 115.77736 * 13 2 1 36 36 H 1.08004 * 120.85730 * 359.97438 * 17 16 14 37 37 H 1.08007 * 120.34596 * 179.97438 * 18 17 16 38 38 H 1.09008 * 109.46934 * 89.99856 * 20 19 18 39 39 H 1.07995 * 119.72185 * 180.23775 * 24 23 19 40 40 H 1.08997 * 115.55010 * 158.51442 * 25 2 1 41 41 H 1.08991 * 117.50168 * 0.02562 * 26 25 2 42 42 H 1.09005 * 117.49562 * 145.01551 * 26 25 2 43 43 H 1.09004 * 117.50304 * 214.97606 * 27 25 2 44 44 H 1.08994 * 117.50063 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1899 2.6282 0.0002 6 1 3.6499 3.5636 -0.0002 7 6 5.5779 2.6281 0.0002 8 7 6.2360 1.4883 0.0002 9 14 6.5121 4.2458 -0.0010 10 1 6.7596 4.6756 1.3986 11 1 7.8097 4.0676 -0.7009 12 1 5.7096 5.2802 -0.7020 13 7 2.0182 -0.6906 1.1963 14 6 1.7643 -0.1826 2.4185 15 8 1.0541 0.7971 2.5339 16 6 2.3494 -0.8170 3.6189 17 6 2.0928 -0.2993 4.8944 18 6 2.6640 -0.9303 5.9851 19 6 3.4631 -2.0415 5.7829 20 6 4.0866 -2.7318 6.9686 21 9 5.2995 -3.3136 6.5847 22 9 4.3180 -1.7974 7.9836 23 7 3.6873 -2.5072 4.5691 24 6 3.1626 -1.9446 3.5003 25 6 2.0400 -0.7214 -1.2491 26 6 1.0280 -1.0138 -2.3587 27 6 1.5566 -2.1537 -1.4846 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6769 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9901 0.6022 0.0006 34 1 7.2060 1.4882 -0.0002 35 1 2.5243 -1.5135 1.1086 36 1 1.4653 0.5701 5.0234 37 1 2.4886 -0.5588 6.9840 38 1 3.4119 -3.5060 7.3343 39 1 3.3663 -2.3573 2.5233 40 1 3.0594 -0.4786 -1.5489 41 1 -0.0010 -0.6918 -2.1990 42 1 1.3817 -0.9636 -3.3885 43 1 2.2579 -2.8532 -1.9397 44 1 0.8756 -2.5823 -0.7494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698646598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:52 Heat of formation + Delta-G solvation = -51.662968 kcal Electronic energy + Delta-G solvation = -29831.747904 eV Core-core repulsion = 25421.510328 eV Total energy + Delta-G solvation = -4410.237576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.21329 -47.21483 -40.84344 -39.70987 -37.75114 -34.71985 -33.69923 -32.92540 -32.44659 -31.05023 -29.70558 -27.26501 -25.87332 -24.09803 -23.88491 -22.87625 -22.36485 -22.09446 -20.52338 -18.99692 -18.30095 -17.81021 -17.68764 -17.42632 -17.16008 -16.28671 -15.75084 -15.24286 -15.15057 -14.92952 -14.67032 -14.42091 -14.05196 -13.97613 -13.74906 -13.56766 -13.35428 -13.19782 -13.16296 -12.85523 -12.61376 -12.39220 -12.14947 -11.97154 -11.56145 -11.44951 -11.11476 -10.92494 -10.80435 -10.77870 -10.25660 -10.12926 -10.09183 -10.02069 -9.86284 -9.67637 -9.45954 -9.40845 -8.80084 -8.70446 -6.85002 -5.73858 -3.00386 0.31981 0.98319 2.80800 3.08245 3.21243 3.45794 3.51280 3.52382 3.69939 3.80074 4.02886 4.04148 4.48491 4.59381 4.62306 4.62462 4.73042 4.80129 4.91224 5.00929 5.04195 5.14177 5.28784 5.32307 5.40394 5.60860 5.62701 5.71882 5.74716 5.87279 5.93468 5.99645 6.15625 6.20935 6.21141 6.23931 6.38610 6.49112 6.64917 6.83830 7.04746 7.48257 7.72777 7.75350 8.40248 8.45489 9.57099 10.14268 10.49929 11.49186 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.003957 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.825596 B = 7073.933909 C = 9072.457618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.202 3.798 3 C 0.142 3.858 4 N -0.726 5.726 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 N -0.702 5.702 14 C 0.570 3.430 15 O -0.524 6.524 16 C -0.156 4.156 17 C -0.016 4.016 18 C -0.148 4.148 19 C 0.060 3.940 20 C 0.328 3.672 21 F -0.185 7.185 22 F -0.194 7.194 23 N -0.457 5.457 24 C 0.141 3.859 25 C -0.151 4.151 26 C -0.171 4.171 27 C -0.184 4.184 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.396 0.604 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.167 0.833 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 -12.547 8.296 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.117 3.883 3 C 0.014 3.986 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 N -0.352 5.352 14 C 0.356 3.644 15 O -0.401 6.401 16 C -0.161 4.161 17 C -0.043 4.043 18 C -0.167 4.167 19 C -0.078 4.078 20 C 0.274 3.726 21 F -0.166 7.166 22 F -0.175 7.175 23 N -0.165 5.165 24 C -0.018 4.018 25 C -0.170 4.170 26 C -0.208 4.208 27 C -0.221 4.221 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.216 0.784 34 H 0.063 0.937 35 H 0.231 0.769 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.184 0.816 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.937 -12.367 8.265 19.072 hybrid contribution 0.856 1.049 -0.010 1.354 sum -11.081 -11.318 8.255 17.861 Atomic orbital electron populations 1.22282 0.94628 1.01656 1.03498 1.20088 0.93097 0.93319 0.81778 1.21086 0.86556 0.91452 0.99535 1.42239 0.99114 1.06219 1.89492 1.19218 0.88994 0.86182 1.41945 0.91358 1.24672 0.96303 0.96671 1.03332 1.69636 1.06698 1.23803 1.58309 0.86225 0.79453 0.83284 0.77480 1.21881 1.21841 1.20800 1.45838 1.56593 1.27705 1.05101 1.17728 0.80557 0.83490 0.82644 1.90720 1.37551 1.25614 1.86178 1.21294 1.01100 0.98171 0.95515 1.21749 0.94646 0.97625 0.90267 1.21820 0.98131 0.95685 1.01111 1.21811 0.97236 0.95118 0.93655 1.20071 0.83533 0.86650 0.82364 1.93052 1.47525 1.84402 1.91596 1.93020 1.95374 1.68212 1.60922 1.67266 1.20206 1.31187 0.97845 1.22980 0.90480 0.91079 0.97276 1.22575 1.00899 0.97006 0.96495 1.23056 0.99255 1.02612 0.95898 1.22973 1.04041 0.91533 1.03594 0.91416 0.92852 0.90492 0.95655 0.93400 0.78427 0.93659 0.76865 0.82692 0.83247 0.85257 0.81587 0.85856 0.88223 0.88818 0.88809 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 7.11 37.16 0.26 -1.94 16 2 C 0.20 3.17 0.54 -131.82 -0.07 3.10 16 3 C 0.14 2.94 4.90 -4.05 -0.02 2.92 16 4 N -0.73 -18.08 5.04 -59.91 -0.30 -18.38 16 5 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.94 -28.17 13.06 55.49 0.72 -27.45 16 9 Si 0.90 22.92 29.55 -169.99 -5.02 17.90 16 10 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.70 -10.41 4.68 -48.54 -0.23 -10.64 16 14 C 0.57 9.28 7.19 -12.33 -0.09 9.20 16 15 O -0.52 -9.88 12.65 5.32 0.07 -9.81 16 16 C -0.16 -2.22 5.89 -104.82 -0.62 -2.83 16 17 C -0.02 -0.21 9.72 -38.87 -0.38 -0.59 16 18 C -0.15 -1.61 9.42 -39.50 -0.37 -1.99 16 19 C 0.06 0.72 6.58 -82.51 -0.54 0.18 16 20 C 0.33 3.20 5.72 36.01 0.21 3.40 16 21 F -0.18 -2.33 17.05 2.25 0.04 -2.29 16 22 F -0.19 -2.02 16.45 2.25 0.04 -1.99 16 23 N -0.46 -6.24 9.94 -9.14 -0.09 -6.33 16 24 C 0.14 1.87 10.71 -17.13 -0.18 1.69 16 25 C -0.15 -2.17 4.86 -90.62 -0.44 -2.61 16 26 C -0.17 -2.01 9.64 -26.69 -0.26 -2.27 16 27 C -0.18 -2.04 9.72 -26.70 -0.26 -2.30 16 28 H 0.07 0.85 6.78 -51.93 -0.35 0.50 16 29 H 0.05 0.62 6.99 -51.93 -0.36 0.26 16 30 H 0.08 1.18 6.31 -51.93 -0.33 0.85 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.10 6.04 -51.93 -0.31 0.79 16 33 H 0.38 9.75 6.62 -40.82 -0.27 9.48 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.40 5.02 6.46 -40.82 -0.26 4.75 16 36 H 0.16 1.85 7.74 -52.48 -0.41 1.44 16 37 H 0.15 1.22 7.59 -52.48 -0.40 0.82 16 38 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.17 1.85 6.43 -52.49 -0.34 1.51 16 40 H 0.12 2.17 7.09 -51.93 -0.37 1.81 16 41 H 0.10 1.08 5.88 -51.93 -0.31 0.77 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.92 7.34 -51.93 -0.38 0.54 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -34.04 367.19 -7.57 -41.61 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.32 Total: 13.13 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.01 Total: -1.28 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.10 Total: -62.80 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.08 Total: -4.28 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.04 -7.57 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698646598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.050 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds