Wall clock time and date at job start Tue Mar 31 2020 22:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47581 * 2 1 4 4 N 1.46494 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00405 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99704 * 0.02562 * 5 4 3 7 7 C 1.38807 * 120.00179 * 180.02562 * 5 4 3 8 8 N 1.31616 * 120.00377 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47191 * 89.99861 * 9 7 5 11 11 H 1.48503 * 109.47123 * 210.00159 * 9 7 5 12 12 H 1.48504 * 109.46902 * 330.00010 * 9 7 5 13 13 N 1.46506 * 109.46541 * 119.99919 * 2 1 3 14 14 C 1.34773 * 120.00049 * 295.77545 * 13 2 1 15 15 O 1.21554 * 120.00159 * 5.00913 * 14 13 2 16 16 C 1.47843 * 119.99948 * 185.00639 * 14 13 2 17 17 C 1.40025 * 120.55884 * 180.02562 * 16 14 13 18 18 C 1.38356 * 118.28764 * 179.97438 * 17 16 14 19 19 C 1.38351 * 119.30661 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.46153 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47037 * 209.99405 * 20 19 18 22 22 F 1.39889 * 109.47182 * 329.99912 * 20 19 18 23 23 N 1.31933 * 121.07555 * 359.97087 * 19 18 17 24 24 C 1.31690 * 121.88232 * 359.78221 * 23 19 18 25 25 C 1.52994 * 109.47155 * 239.99352 * 2 1 3 26 26 C 1.53002 * 117.49805 * 12.84472 * 25 2 1 27 27 C 1.52995 * 117.50148 * 304.18486 * 25 2 1 28 28 H 1.08997 * 109.46759 * 59.99976 * 1 2 3 29 29 H 1.08999 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46837 * 300.00273 * 1 2 3 31 31 H 1.08997 * 109.47093 * 299.99819 * 3 2 1 32 32 H 1.09005 * 109.46956 * 59.99566 * 3 2 1 33 33 H 0.97009 * 120.00244 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00317 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99705 * 115.77736 * 13 2 1 36 36 H 1.08004 * 120.85730 * 359.97438 * 17 16 14 37 37 H 1.08007 * 120.34596 * 179.97438 * 18 17 16 38 38 H 1.09008 * 109.46934 * 89.99856 * 20 19 18 39 39 H 1.07995 * 119.72185 * 180.23775 * 24 23 19 40 40 H 1.08997 * 115.55010 * 158.51442 * 25 2 1 41 41 H 1.08991 * 117.50168 * 0.02562 * 26 25 2 42 42 H 1.09005 * 117.49562 * 145.01551 * 26 25 2 43 43 H 1.09004 * 117.50304 * 214.97606 * 27 25 2 44 44 H 1.08994 * 117.50063 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1899 2.6282 0.0002 6 1 3.6499 3.5636 -0.0002 7 6 5.5779 2.6281 0.0002 8 7 6.2360 1.4883 0.0002 9 14 6.5121 4.2458 -0.0010 10 1 6.7596 4.6756 1.3986 11 1 7.8097 4.0676 -0.7009 12 1 5.7096 5.2802 -0.7020 13 7 2.0182 -0.6906 1.1963 14 6 1.7643 -0.1826 2.4185 15 8 1.0541 0.7971 2.5339 16 6 2.3494 -0.8170 3.6189 17 6 2.0928 -0.2993 4.8944 18 6 2.6640 -0.9303 5.9851 19 6 3.4631 -2.0415 5.7829 20 6 4.0866 -2.7318 6.9686 21 9 5.2995 -3.3136 6.5847 22 9 4.3180 -1.7974 7.9836 23 7 3.6873 -2.5072 4.5691 24 6 3.1626 -1.9446 3.5003 25 6 2.0400 -0.7214 -1.2491 26 6 1.0280 -1.0138 -2.3587 27 6 1.5566 -2.1537 -1.4846 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6769 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9901 0.6022 0.0006 34 1 7.2060 1.4882 -0.0002 35 1 2.5243 -1.5135 1.1086 36 1 1.4653 0.5701 5.0234 37 1 2.4886 -0.5588 6.9840 38 1 3.4119 -3.5060 7.3343 39 1 3.3663 -2.3573 2.5233 40 1 3.0594 -0.4786 -1.5489 41 1 -0.0010 -0.6918 -2.1990 42 1 1.3817 -0.9636 -3.3885 43 1 2.2579 -2.8532 -1.9397 44 1 0.8756 -2.5823 -0.7494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698646598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:51 Heat of formation + Delta-G solvation = -74.118102 kcal Electronic energy + Delta-G solvation = -29832.721631 eV Core-core repulsion = 25421.510328 eV Total energy + Delta-G solvation = -4411.211303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03110 -48.05519 -41.95603 -40.83789 -38.93571 -36.37797 -35.16807 -34.04232 -33.53957 -32.74969 -31.13224 -28.19395 -27.56363 -25.35401 -24.98800 -24.28186 -23.73414 -23.11469 -21.64412 -20.28806 -19.33440 -19.23752 -18.68772 -18.52203 -18.34850 -17.32718 -16.86936 -16.76966 -16.24849 -16.20811 -16.08796 -15.76657 -15.33881 -15.02995 -14.90508 -14.86681 -14.53252 -14.33369 -14.21882 -14.07357 -13.78968 -13.71790 -13.60647 -13.18957 -13.09133 -12.82661 -12.49199 -12.35989 -12.25823 -12.07977 -12.01441 -11.78919 -11.32311 -11.13814 -11.09913 -11.02724 -10.89551 -10.54846 -10.43482 -9.99998 -8.95283 -7.96941 -5.22695 -0.69144 0.01155 1.42372 1.43668 1.52016 1.66702 2.00526 2.30037 2.53216 2.63491 3.01151 3.08357 3.17950 3.36204 3.54190 3.62183 3.65406 3.74313 3.85758 3.90633 3.95252 4.01106 4.13452 4.17528 4.24772 4.43265 4.46266 4.60021 4.75463 4.79542 4.86736 4.89686 4.91568 4.99809 5.04238 5.13665 5.25895 5.29003 5.34136 5.44602 5.48317 5.61122 6.25499 6.49455 6.54867 7.17806 7.33314 8.08648 8.35970 9.25865 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008352 B = 0.003957 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.825596 B = 7073.933909 C = 9072.457618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.211 3.789 3 C 0.142 3.858 4 N -0.729 5.729 5 C -0.242 4.242 6 H 0.064 0.936 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.965 3.035 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.272 1.272 13 N -0.696 5.696 14 C 0.565 3.435 15 O -0.557 6.557 16 C -0.176 4.176 17 C -0.024 4.024 18 C -0.138 4.138 19 C 0.055 3.945 20 C 0.327 3.673 21 F -0.203 7.203 22 F -0.197 7.197 23 N -0.475 5.475 24 C 0.138 3.862 25 C -0.178 4.178 26 C -0.161 4.161 27 C -0.156 4.156 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.021 0.979 32 H 0.025 0.975 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.407 0.593 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 -13.797 8.816 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.125 3.875 3 C 0.015 3.985 4 N -0.373 5.373 5 C -0.374 4.374 6 H 0.082 0.918 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.795 3.205 10 H -0.220 1.220 11 H -0.218 1.218 12 H -0.197 1.197 13 N -0.346 5.346 14 C 0.352 3.648 15 O -0.437 6.437 16 C -0.181 4.181 17 C -0.050 4.050 18 C -0.157 4.157 19 C -0.084 4.084 20 C 0.273 3.727 21 F -0.184 7.184 22 F -0.179 7.179 23 N -0.184 5.184 24 C -0.021 4.021 25 C -0.197 4.197 26 C -0.199 4.199 27 C -0.193 4.193 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.243 0.757 36 H 0.175 0.825 37 H 0.198 0.802 38 H 0.197 0.803 39 H 0.197 0.803 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.954 -13.632 8.775 20.752 hybrid contribution 1.139 1.455 -0.139 1.853 sum -11.815 -12.177 8.636 19.038 Atomic orbital electron populations 1.22204 0.92531 1.03244 1.03121 1.19903 0.94417 0.90371 0.82768 1.21134 0.84221 0.95226 0.97920 1.42309 1.00791 1.05030 1.89132 1.19536 0.89602 0.87230 1.41018 0.91774 1.25391 0.97104 0.99719 1.03879 1.69775 1.06500 1.25528 1.59611 0.85262 0.78084 0.79974 0.77215 1.21973 1.21787 1.19658 1.45818 1.56308 1.27845 1.04646 1.18102 0.80081 0.83117 0.83492 1.90696 1.39160 1.27100 1.86740 1.21237 1.02456 0.99165 0.95282 1.21934 0.94818 0.97869 0.90387 1.22095 0.96930 0.94809 1.01900 1.22332 0.96919 0.95244 0.93909 1.20562 0.83303 0.87343 0.81446 1.93014 1.48941 1.84651 1.91827 1.93014 1.95403 1.68629 1.60809 1.67321 1.20726 1.31830 0.98528 1.23164 0.90101 0.90779 0.98030 1.22254 0.99854 1.00353 0.97191 1.23189 0.99076 1.02181 0.95425 1.23068 1.03414 0.89895 1.02956 0.90290 0.90170 0.92383 0.96123 0.95755 0.78994 0.94113 0.75656 0.82455 0.80210 0.80258 0.80303 0.89600 0.86759 0.88389 0.87776 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 7.11 71.98 0.51 -3.45 16 2 C 0.21 6.60 0.54 3.60 0.00 6.60 16 3 C 0.14 6.09 4.90 86.38 0.42 6.51 16 4 N -0.73 -37.52 5.04 -343.47 -1.73 -39.25 16 5 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 6 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 8 N -0.96 -59.11 13.06 21.65 0.28 -58.83 16 9 Si 0.97 47.69 29.55 68.60 2.03 49.71 16 10 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.70 -20.73 4.68 -425.77 -1.99 -22.73 16 14 C 0.57 18.78 7.19 86.79 0.62 19.40 16 15 O -0.56 -21.74 12.65 -3.88 -0.05 -21.78 16 16 C -0.18 -5.05 5.89 -19.99 -0.12 -5.17 16 17 C -0.02 -0.59 9.72 22.73 0.22 -0.37 16 18 C -0.14 -2.79 9.42 22.32 0.21 -2.58 16 19 C 0.05 1.21 6.58 42.57 0.28 1.49 16 20 C 0.33 5.58 5.72 71.24 0.41 5.99 16 21 F -0.20 -4.83 17.05 44.97 0.77 -4.07 16 22 F -0.20 -3.64 16.45 44.97 0.74 -2.90 16 23 N -0.48 -12.55 9.94 -182.82 -1.82 -14.37 16 24 C 0.14 3.62 10.71 85.02 0.91 4.53 16 25 C -0.18 -5.01 4.86 -10.80 -0.05 -5.06 16 26 C -0.16 -3.45 9.64 30.62 0.30 -3.15 16 27 C -0.16 -3.06 9.72 30.62 0.30 -2.76 16 28 H 0.08 1.85 6.78 -2.39 -0.02 1.83 16 29 H 0.08 1.65 6.99 -2.39 -0.02 1.63 16 30 H 0.06 1.76 6.31 -2.39 -0.02 1.74 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.02 1.17 6.04 -2.38 -0.01 1.16 16 33 H 0.38 19.95 6.62 -92.70 -0.61 19.34 16 34 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.41 10.21 6.46 -92.71 -0.60 9.61 16 36 H 0.16 3.78 7.74 -2.91 -0.02 3.76 16 37 H 0.18 2.44 7.59 -2.91 -0.02 2.42 16 38 H 0.18 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.18 3.95 6.43 -2.91 -0.02 3.93 16 40 H 0.09 3.12 7.09 -2.39 -0.02 3.10 16 41 H 0.11 2.12 5.88 -2.39 -0.01 2.10 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.11 1.80 7.34 -2.39 -0.02 1.78 16 Total: -1.00 -75.46 367.19 3.41 -72.05 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.14 Total: 36.90 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.32 Total: 5.26 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -5.26 Total: -135.18 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 1.51 Total: -6.97 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -75.46 3.41 -72.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698646598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.066 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds