Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 N 1.46501 * 109.47216 * 299.99842 * 3 2 1 5 5 C 1.36938 * 119.99891 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00230 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00174 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99591 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00266 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47212 * 60.00495 * 9 7 5 11 11 H 1.48496 * 109.47336 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47440 * 300.00280 * 9 7 5 13 13 N 1.46497 * 109.46783 * 240.00635 * 2 1 3 14 14 C 1.34784 * 119.99896 * 175.39322 * 13 2 1 15 15 O 1.21554 * 119.99827 * 355.80788 * 14 13 2 16 16 C 1.47837 * 120.00004 * 175.54345 * 14 13 2 17 17 C 1.40025 * 120.55761 * 180.27281 * 16 14 13 18 18 C 1.38358 * 118.28425 * 179.97438 * 17 16 14 19 19 C 1.38352 * 119.30808 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.45829 * 180.02562 * 19 18 17 21 21 F 1.39892 * 109.47326 * 300.00083 * 20 19 18 22 22 F 1.39903 * 109.47144 * 60.00445 * 20 19 18 23 23 N 1.31922 * 121.07734 * 359.97438 * 19 18 17 24 24 C 1.31696 * 121.88200 * 359.72671 * 23 19 18 25 25 C 1.52995 * 109.47559 * 120.00146 * 2 1 3 26 26 C 1.53000 * 117.49956 * 121.75772 * 25 2 1 27 27 C 1.52997 * 117.49850 * 53.13507 * 25 2 1 28 28 H 1.09006 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47095 * 299.99617 * 1 2 3 30 30 H 1.08999 * 109.47589 * 59.99647 * 1 2 3 31 31 H 1.08997 * 109.47051 * 60.00356 * 3 2 1 32 32 H 1.09007 * 109.47191 * 180.02562 * 3 2 1 33 33 H 0.96996 * 120.00115 * 0.02562 * 4 3 2 34 34 H 0.97006 * 119.99659 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00510 * 355.38599 * 13 2 1 36 36 H 1.07995 * 120.85639 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.34221 * 179.97438 * 18 17 16 38 38 H 1.09004 * 109.47009 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.71968 * 180.28654 * 24 23 19 40 40 H 1.09003 * 115.54970 * 267.46420 * 25 2 1 41 41 H 1.09001 * 117.49725 * 0.02562 * 26 25 2 42 42 H 1.08997 * 117.49758 * 145.01482 * 26 25 2 43 43 H 1.08999 * 117.50234 * 214.97734 * 27 25 2 44 44 H 1.08998 * 117.49893 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1962 5 6 1.8819 3.4444 -1.4126 6 1 2.5027 3.9693 -0.7017 7 6 1.4187 4.0989 -2.5457 8 7 0.6617 3.4593 -3.4119 9 14 1.8699 5.8873 -2.8413 10 1 3.3465 6.0171 -2.9305 11 1 1.2543 6.3498 -4.1110 12 1 1.3671 6.7170 -1.7170 13 7 2.0182 -0.6905 -1.1962 14 6 3.3398 -0.7331 -1.4576 15 8 4.1202 -0.1346 -0.7431 16 6 3.8408 -1.5124 -2.6096 17 6 5.2118 -1.5693 -2.8885 18 6 5.6289 -2.3130 -3.9781 19 6 4.6873 -2.9698 -4.7502 20 6 5.1379 -3.7812 -5.9374 21 9 5.8077 -2.9511 -6.8425 22 9 6.0006 -4.7957 -5.5085 23 7 3.4017 -2.8982 -4.4634 24 6 2.9560 -2.2082 -3.4340 25 6 2.0401 -0.7212 1.2492 26 6 2.9491 -1.9345 1.0427 27 6 1.5080 -2.1303 1.5181 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4427 -0.0005 33 1 0.9936 1.6619 -1.8345 34 1 0.3377 3.9168 -4.2036 35 1 1.3905 -1.1171 -1.8002 36 1 5.9252 -1.0462 -2.2690 37 1 6.6785 -2.3793 -4.2238 38 1 4.2698 -4.2251 -6.4247 39 1 1.8962 -2.1772 -3.2287 40 1 2.2379 -0.0848 2.1117 41 1 3.1840 -2.2186 0.0169 42 1 3.7452 -2.0963 1.7694 43 1 1.3561 -2.4211 2.5575 44 1 0.7949 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698646599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -45.261397 kcal Electronic energy + Delta-G solvation = -29991.675233 eV Core-core repulsion = 25581.715250 eV Total energy + Delta-G solvation = -4409.959983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.32985 -47.31425 -41.01803 -39.85282 -37.24321 -35.02252 -33.64285 -32.97631 -32.46899 -31.18992 -29.59819 -27.33387 -26.03704 -24.08419 -23.84921 -23.29400 -22.18572 -21.42070 -20.94900 -19.20095 -18.37716 -17.85330 -17.56743 -17.55753 -17.28964 -16.42190 -15.86215 -15.36973 -15.20025 -14.71750 -14.51991 -14.37568 -14.25378 -13.98481 -13.67983 -13.58252 -13.45461 -13.41785 -13.28915 -12.89881 -12.67880 -12.21038 -12.12691 -11.94918 -11.59091 -11.40483 -11.14794 -10.90226 -10.82880 -10.77142 -10.29493 -10.23049 -10.18528 -10.07745 -9.86285 -9.67447 -9.54199 -9.41274 -8.77239 -8.70126 -6.83191 -5.73739 -2.99639 0.24615 0.91146 2.79493 2.98536 3.20226 3.46393 3.50572 3.51776 3.63787 3.83179 3.94373 4.08025 4.39380 4.53732 4.59766 4.69376 4.69980 4.78066 4.79914 4.97261 5.04306 5.08357 5.23957 5.37101 5.47441 5.61484 5.63714 5.67316 5.71001 5.80550 5.92008 5.99483 6.09441 6.14448 6.20219 6.23067 6.31552 6.53362 6.59442 6.85708 7.11620 7.37258 7.71293 7.74822 8.41870 8.46180 9.57401 10.15147 10.50532 11.49496 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.003859 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.367331 B = 7253.090296 C = 9476.199080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.200 3.800 3 C 0.139 3.861 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.708 5.708 14 C 0.569 3.431 15 O -0.509 6.509 16 C -0.153 4.153 17 C -0.017 4.017 18 C -0.138 4.138 19 C 0.061 3.939 20 C 0.325 3.675 21 F -0.191 7.191 22 F -0.194 7.194 23 N -0.460 5.460 24 C 0.136 3.864 25 C -0.143 4.143 26 C -0.165 4.165 27 C -0.182 4.182 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.381 0.619 34 H 0.254 0.746 35 H 0.395 0.605 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.168 0.832 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -18.635 1.757 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.115 3.885 3 C 0.011 3.989 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.359 5.359 14 C 0.354 3.646 15 O -0.385 6.385 16 C -0.158 4.158 17 C -0.044 4.044 18 C -0.158 4.158 19 C -0.078 4.078 20 C 0.270 3.730 21 F -0.172 7.172 22 F -0.175 7.175 23 N -0.169 5.169 24 C -0.023 4.023 25 C -0.163 4.163 26 C -0.202 4.202 27 C -0.219 4.219 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.215 0.785 34 H 0.063 0.937 35 H 0.229 0.771 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.151 0.849 39 H 0.185 0.815 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.567 -18.475 1.764 19.113 hybrid contribution 0.434 1.241 -0.287 1.345 sum 5.002 -17.235 1.477 18.007 Atomic orbital electron populations 1.22001 0.92883 1.01451 1.04290 1.20130 0.93881 0.92726 0.81786 1.21185 0.99265 0.87487 0.90984 1.42227 1.61229 1.10468 1.23105 1.19179 1.25055 0.87604 1.04310 0.91416 1.24667 1.00774 0.98161 0.97467 1.69633 1.39707 1.36128 1.13194 0.86290 0.77851 0.85193 0.77025 1.21414 1.21776 1.21350 1.45900 1.06585 1.56777 1.26639 1.17608 0.82951 0.80461 0.83532 1.90767 1.55850 1.42922 1.48938 1.21369 0.95422 1.00423 0.98622 1.21785 0.95106 0.93016 0.94460 1.21886 1.01460 0.97144 0.95342 1.21613 0.90644 0.98404 0.97109 1.20100 0.88147 0.79696 0.85039 1.93044 1.82936 1.73245 1.68024 1.93030 1.73259 1.60410 1.90785 1.67193 1.14971 1.17599 1.17091 1.22940 1.00142 0.90623 0.88585 1.22569 1.03976 0.90242 0.99488 1.22914 0.93040 1.02325 1.01937 1.22969 0.97332 0.99924 1.01650 0.92785 0.90804 0.90609 0.96044 0.92554 0.78513 0.93660 0.77053 0.82597 0.83539 0.84944 0.81537 0.87166 0.89283 0.89390 0.89220 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.18 37.16 0.30 -1.75 16 2 C 0.20 3.07 0.55 -131.82 -0.07 2.99 16 3 C 0.14 2.84 4.83 -4.04 -0.02 2.82 16 4 N -0.73 -17.97 5.18 -59.90 -0.31 -18.28 16 5 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -28.04 13.06 55.49 0.72 -27.31 16 9 Si 0.90 22.81 29.55 -169.99 -5.02 17.78 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.71 -10.13 4.15 -48.54 -0.20 -10.33 16 14 C 0.57 9.01 4.79 -12.33 -0.06 8.95 16 15 O -0.51 -9.61 12.70 5.32 0.07 -9.55 16 16 C -0.15 -2.09 5.89 -104.82 -0.62 -2.71 16 17 C -0.02 -0.22 9.72 -38.87 -0.38 -0.60 16 18 C -0.14 -1.55 9.60 -39.49 -0.38 -1.93 16 19 C 0.06 0.70 6.28 -82.51 -0.52 0.18 16 20 C 0.32 3.10 5.54 36.00 0.20 3.30 16 21 F -0.19 -2.10 17.25 2.25 0.04 -2.06 16 22 F -0.19 -1.94 17.25 2.25 0.04 -1.91 16 23 N -0.46 -5.64 10.23 -9.14 -0.09 -5.73 16 24 C 0.14 1.65 10.71 -17.13 -0.18 1.47 16 25 C -0.14 -1.92 4.86 -90.62 -0.44 -2.37 16 26 C -0.16 -2.08 8.53 -26.73 -0.23 -2.31 16 27 C -0.18 -1.97 9.68 -26.73 -0.26 -2.23 16 28 H 0.05 0.59 6.89 -51.93 -0.36 0.23 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.22 6.86 -51.93 -0.36 0.86 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 1.29 5.72 -51.92 -0.30 1.00 16 33 H 0.38 9.63 6.35 -40.82 -0.26 9.37 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.39 4.69 6.56 -40.82 -0.27 4.42 16 36 H 0.16 1.88 7.74 -52.49 -0.41 1.48 16 37 H 0.15 1.32 8.06 -52.48 -0.42 0.89 16 38 H 0.13 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.17 1.59 6.43 -52.49 -0.34 1.26 16 40 H 0.11 1.50 8.06 -51.93 -0.42 1.08 16 41 H 0.09 1.18 5.17 -51.93 -0.27 0.91 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 0.92 7.17 -51.93 -0.37 0.55 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -33.30 367.14 -7.55 -40.85 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.42 Total: 12.37 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.90 Total: -1.37 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.12 Total: -61.66 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.30 -7.55 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698646599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.416 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds