Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 N 1.46501 * 109.47216 * 299.99842 * 3 2 1 5 5 C 1.36938 * 119.99891 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00230 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00174 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99591 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00266 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47212 * 60.00495 * 9 7 5 11 11 H 1.48496 * 109.47336 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47440 * 300.00280 * 9 7 5 13 13 N 1.46497 * 109.46783 * 240.00635 * 2 1 3 14 14 C 1.34784 * 119.99896 * 175.39322 * 13 2 1 15 15 O 1.21554 * 119.99827 * 355.80788 * 14 13 2 16 16 C 1.47837 * 120.00004 * 175.54345 * 14 13 2 17 17 C 1.40025 * 120.55761 * 180.27281 * 16 14 13 18 18 C 1.38358 * 118.28425 * 179.97438 * 17 16 14 19 19 C 1.38352 * 119.30808 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.45829 * 180.02562 * 19 18 17 21 21 F 1.39892 * 109.47326 * 300.00083 * 20 19 18 22 22 F 1.39903 * 109.47144 * 60.00445 * 20 19 18 23 23 N 1.31922 * 121.07734 * 359.97438 * 19 18 17 24 24 C 1.31696 * 121.88200 * 359.72671 * 23 19 18 25 25 C 1.52995 * 109.47559 * 120.00146 * 2 1 3 26 26 C 1.53000 * 117.49956 * 121.75772 * 25 2 1 27 27 C 1.52997 * 117.49850 * 53.13507 * 25 2 1 28 28 H 1.09006 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47095 * 299.99617 * 1 2 3 30 30 H 1.08999 * 109.47589 * 59.99647 * 1 2 3 31 31 H 1.08997 * 109.47051 * 60.00356 * 3 2 1 32 32 H 1.09007 * 109.47191 * 180.02562 * 3 2 1 33 33 H 0.96996 * 120.00115 * 0.02562 * 4 3 2 34 34 H 0.97006 * 119.99659 * 179.97438 * 8 7 5 35 35 H 0.96995 * 120.00510 * 355.38599 * 13 2 1 36 36 H 1.07995 * 120.85639 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.34221 * 179.97438 * 18 17 16 38 38 H 1.09004 * 109.47009 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.71968 * 180.28654 * 24 23 19 40 40 H 1.09003 * 115.54970 * 267.46420 * 25 2 1 41 41 H 1.09001 * 117.49725 * 0.02562 * 26 25 2 42 42 H 1.08997 * 117.49758 * 145.01482 * 26 25 2 43 43 H 1.08999 * 117.50234 * 214.97734 * 27 25 2 44 44 H 1.08998 * 117.49893 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1962 5 6 1.8819 3.4444 -1.4126 6 1 2.5027 3.9693 -0.7017 7 6 1.4187 4.0989 -2.5457 8 7 0.6617 3.4593 -3.4119 9 14 1.8699 5.8873 -2.8413 10 1 3.3465 6.0171 -2.9305 11 1 1.2543 6.3498 -4.1110 12 1 1.3671 6.7170 -1.7170 13 7 2.0182 -0.6905 -1.1962 14 6 3.3398 -0.7331 -1.4576 15 8 4.1202 -0.1346 -0.7431 16 6 3.8408 -1.5124 -2.6096 17 6 5.2118 -1.5693 -2.8885 18 6 5.6289 -2.3130 -3.9781 19 6 4.6873 -2.9698 -4.7502 20 6 5.1379 -3.7812 -5.9374 21 9 5.8077 -2.9511 -6.8425 22 9 6.0006 -4.7957 -5.5085 23 7 3.4017 -2.8982 -4.4634 24 6 2.9560 -2.2082 -3.4340 25 6 2.0401 -0.7212 1.2492 26 6 2.9491 -1.9345 1.0427 27 6 1.5080 -2.1303 1.5181 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4427 -0.0005 33 1 0.9936 1.6619 -1.8345 34 1 0.3377 3.9168 -4.2036 35 1 1.3905 -1.1171 -1.8002 36 1 5.9252 -1.0462 -2.2690 37 1 6.6785 -2.3793 -4.2238 38 1 4.2698 -4.2251 -6.4247 39 1 1.8962 -2.1772 -3.2287 40 1 2.2379 -0.0848 2.1117 41 1 3.1840 -2.2186 0.0169 42 1 3.7452 -2.0963 1.7694 43 1 1.3561 -2.4211 2.5575 44 1 0.7949 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698646599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -66.742439 kcal Electronic energy + Delta-G solvation = -29992.606721 eV Core-core repulsion = 25581.715250 eV Total energy + Delta-G solvation = -4410.891471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.12032 -48.10949 -42.11551 -40.91970 -38.44266 -36.59149 -35.08126 -34.09025 -33.62765 -32.71025 -31.14452 -28.24569 -27.62200 -25.56885 -25.03247 -24.33771 -23.12332 -22.92268 -22.05261 -20.43684 -19.40380 -19.25547 -18.69724 -18.50200 -18.35767 -17.43710 -17.08099 -16.80928 -16.23285 -16.16710 -15.76178 -15.56362 -15.38088 -15.11073 -15.00434 -14.72358 -14.59081 -14.47711 -14.42496 -14.32314 -13.57516 -13.54441 -13.51015 -13.28610 -13.00131 -12.78922 -12.43484 -12.39226 -12.28689 -12.15865 -12.00745 -11.77681 -11.40478 -11.20529 -11.15878 -10.95804 -10.88864 -10.51872 -10.47527 -9.98755 -8.90797 -7.94973 -5.19915 -0.74069 -0.03616 1.44116 1.46307 1.52325 1.69885 2.03436 2.17578 2.54852 2.57746 2.95243 3.10126 3.23303 3.38379 3.53610 3.57810 3.64868 3.70090 3.84130 3.92386 3.99683 4.00321 4.11410 4.18327 4.35197 4.37246 4.39342 4.56307 4.69319 4.80327 4.81303 4.90163 4.93525 4.98259 5.07902 5.20433 5.21776 5.29725 5.33968 5.37974 5.47992 5.67044 6.28250 6.42483 6.55077 7.23415 7.35831 8.11478 8.39206 9.27799 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009049 B = 0.003859 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.367331 B = 7253.090296 C = 9476.199080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.209 3.791 3 C 0.139 3.861 4 N -0.729 5.729 5 C -0.242 4.242 6 H 0.062 0.938 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.965 3.035 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.700 5.700 14 C 0.567 3.433 15 O -0.548 6.548 16 C -0.172 4.172 17 C -0.025 4.025 18 C -0.139 4.139 19 C 0.057 3.943 20 C 0.329 3.671 21 F -0.199 7.199 22 F -0.195 7.195 23 N -0.465 5.465 24 C 0.139 3.861 25 C -0.162 4.162 26 C -0.173 4.173 27 C -0.148 4.148 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.017 0.983 32 H 0.031 0.969 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.407 0.593 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.190 0.810 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -20.244 1.626 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.123 3.877 3 C 0.012 3.988 4 N -0.372 5.372 5 C -0.374 4.374 6 H 0.080 0.920 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.794 3.206 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.204 1.204 13 N -0.352 5.352 14 C 0.354 3.646 15 O -0.427 6.427 16 C -0.177 4.177 17 C -0.052 4.052 18 C -0.158 4.158 19 C -0.082 4.082 20 C 0.275 3.725 21 F -0.181 7.181 22 F -0.177 7.177 23 N -0.174 5.174 24 C -0.020 4.020 25 C -0.181 4.181 26 C -0.210 4.210 27 C -0.185 4.185 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.244 0.756 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.179 0.821 39 H 0.207 0.793 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.939 -20.111 1.649 20.559 hybrid contribution 0.700 1.718 -0.215 1.867 sum 4.639 -18.393 1.434 19.023 Atomic orbital electron populations 1.21945 0.91370 1.03472 1.03080 1.19928 0.94801 0.89785 0.83194 1.21227 0.97740 0.90825 0.89048 1.42292 1.61038 1.09674 1.24234 1.19489 1.24503 0.89200 1.04196 0.91973 1.25367 1.01289 1.01901 0.97493 1.69763 1.40796 1.37376 1.13463 0.85343 0.77390 0.80938 0.76901 1.21297 1.21756 1.20425 1.45834 1.06523 1.56204 1.26622 1.17951 0.83017 0.79992 0.83632 1.90744 1.56789 1.44740 1.50428 1.21286 0.96181 1.01542 0.98723 1.21898 0.94931 0.93307 0.95018 1.22116 1.02633 0.96467 0.94619 1.22049 0.90550 0.98065 0.97525 1.20292 0.88751 0.79243 0.84243 1.93031 1.83213 1.73639 1.68172 1.93028 1.73468 1.60344 1.90823 1.67276 1.15319 1.17750 1.17018 1.23256 1.00965 0.89787 0.88018 1.22431 1.06085 0.91291 0.98331 1.22911 0.94380 1.01983 1.01744 1.23074 0.95897 0.96429 1.03116 0.89086 0.90663 0.93121 0.96498 0.95072 0.78944 0.94074 0.75553 0.82860 0.81500 0.82071 0.79346 0.87855 0.89981 0.89423 0.87278 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.18 71.98 0.59 -3.11 16 2 C 0.21 6.32 0.55 3.60 0.00 6.32 16 3 C 0.14 5.85 4.83 86.38 0.42 6.27 16 4 N -0.73 -36.90 5.18 -343.44 -1.78 -38.68 16 5 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 6 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.96 -58.13 13.06 21.65 0.28 -57.85 16 9 Si 0.96 47.23 29.55 68.60 2.03 49.25 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 N -0.70 -19.74 4.15 -425.76 -1.77 -21.51 16 14 C 0.57 18.20 4.79 86.78 0.42 18.61 16 15 O -0.55 -21.51 12.70 -3.89 -0.05 -21.56 16 16 C -0.17 -4.68 5.89 -19.99 -0.12 -4.80 16 17 C -0.03 -0.63 9.72 22.73 0.22 -0.41 16 18 C -0.14 -2.98 9.60 22.33 0.21 -2.76 16 19 C 0.06 1.21 6.28 42.57 0.27 1.48 16 20 C 0.33 5.58 5.54 71.23 0.39 5.97 16 21 F -0.20 -4.02 17.25 44.97 0.78 -3.24 16 22 F -0.20 -3.54 17.25 44.97 0.78 -2.76 16 23 N -0.47 -10.62 10.23 -182.82 -1.87 -12.49 16 24 C 0.14 3.19 10.71 85.02 0.91 4.10 16 25 C -0.16 -4.20 4.86 -10.80 -0.05 -4.25 16 26 C -0.17 -4.18 8.53 30.59 0.26 -3.91 16 27 C -0.15 -2.77 9.68 30.59 0.30 -2.47 16 28 H 0.09 1.70 6.89 -2.38 -0.02 1.68 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.60 6.86 -2.39 -0.02 1.58 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.03 1.50 5.72 -2.38 -0.01 1.49 16 33 H 0.38 19.44 6.35 -92.71 -0.59 18.85 16 34 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 35 H 0.41 9.18 6.56 -92.71 -0.61 8.57 16 36 H 0.15 3.86 7.74 -2.91 -0.02 3.84 16 37 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.16 1.85 8.10 -2.38 -0.02 1.83 16 39 H 0.19 3.27 6.43 -2.91 -0.02 3.25 16 40 H 0.10 2.80 8.06 -2.39 -0.02 2.78 16 41 H 0.08 2.11 5.17 -2.39 -0.01 2.10 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.11 1.69 7.17 -2.39 -0.02 1.68 16 Total: -1.00 -72.47 367.14 3.39 -69.08 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.13 Total: 35.27 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.12 Total: 4.49 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -5.13 Total: -130.52 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.55 Total: -6.00 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -72.47 3.39 -69.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698646599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.334 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds