Wall clock time and date at job start Wed Apr 1 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47011 * 245.48566 * 3 2 1 5 5 C 1.42899 * 114.00219 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47438 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 O 1.42894 * 112.94182 * 53.42971 * 11 10 9 13 13 C 1.53939 * 113.73376 * 281.72718 * 11 10 9 14 14 N 1.47965 * 86.18318 * 221.92110 * 13 11 10 15 15 C 1.46896 * 111.00100 * 137.57689 * 14 13 11 16 16 C 1.50699 * 109.46970 * 70.64608 * 15 14 13 17 17 O 1.21294 * 120.00179 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00421 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00345 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00485 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47389 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47120 * 119.99950 * 23 21 19 26 26 H 1.48506 * 109.47371 * 240.00006 * 23 21 19 27 27 C 1.47972 * 90.75954 * 24.68659 * 14 13 11 28 28 H 4.38452 * 5.44396 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.46868 * 125.49001 * 3 2 1 30 30 H 1.08994 * 109.47217 * 5.48959 * 3 2 1 31 31 H 1.08998 * 109.47093 * 59.99678 * 5 4 3 32 32 H 1.09011 * 109.46622 * 300.00288 * 5 4 3 33 33 H 1.08998 * 109.47508 * 59.99606 * 6 5 4 34 34 H 1.09002 * 109.47337 * 299.99891 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 37 37 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 38 38 H 0.96702 * 114.00177 * 309.66781 * 12 11 10 39 39 H 1.09004 * 113.75478 * 336.23643 * 13 11 10 40 40 H 1.08996 * 113.76197 * 107.59918 * 13 11 10 41 41 H 1.09004 * 109.46697 * 190.64022 * 15 14 13 42 42 H 1.08997 * 109.47494 * 310.64441 * 15 14 13 43 43 H 0.97010 * 119.99656 * 359.97438 * 18 16 15 44 44 H 0.97004 * 120.00654 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.75645 * 220.99382 * 27 14 13 46 46 H 1.09000 * 113.75871 * 89.63163 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1221 0.5599 1.2258 5 6 4.5466 0.6079 1.3283 6 6 4.9408 1.2208 2.6735 7 6 6.4431 1.2708 2.7819 8 8 7.1307 0.8566 1.8727 9 7 7.0225 1.7749 3.8894 10 6 8.4829 1.8292 3.9921 11 6 8.8771 2.4466 5.3353 12 8 8.2678 1.7916 6.4496 13 6 8.7539 3.9806 5.3721 14 7 10.0419 3.9677 6.1002 15 6 10.9326 5.0294 5.6131 16 6 10.4011 6.3704 6.0494 17 8 9.3805 6.4353 6.7015 18 7 11.0598 7.4977 5.7150 19 6 10.5760 8.7176 6.1115 20 1 9.6668 8.7754 6.6914 21 6 11.2556 9.8797 5.7671 22 7 12.3616 9.8094 5.0610 23 14 10.5960 11.5420 6.3067 24 1 9.3456 11.3498 7.0843 25 1 11.6062 12.2236 7.1554 26 1 10.3122 12.3742 5.1099 27 6 10.3926 2.6630 5.4967 28 1 -1.0501 0.0001 -0.0003 29 1 3.0091 0.5974 -0.8367 30 1 3.0099 -1.0221 -0.0983 31 1 4.9488 1.2174 0.5191 32 1 4.9502 -0.4023 1.2574 33 1 4.5387 0.6109 3.4825 34 1 4.5372 2.2308 2.7449 35 1 6.4725 2.1059 4.6166 36 1 8.8897 0.8203 3.9226 37 1 8.8818 2.4384 3.1811 38 1 7.3110 1.6797 6.3650 39 1 8.8095 4.4492 4.3895 40 1 7.9155 4.3396 5.9689 41 1 11.9313 4.8831 6.0247 42 1 10.9793 4.9937 4.5247 43 1 11.8764 7.4458 5.1938 44 1 12.8362 10.6206 4.8209 45 1 10.8635 1.9694 6.1933 46 1 10.9276 2.7463 4.5507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699912863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:00 Heat of formation + Delta-G solvation = -65.838867 kcal Electronic energy + Delta-G solvation = -28138.902919 eV Core-core repulsion = 23839.138146 eV Total energy + Delta-G solvation = -4299.764773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82073 -39.85590 -38.46464 -37.94341 -35.89817 -34.57167 -33.92776 -33.90327 -32.08137 -31.30725 -30.25181 -27.92021 -27.10658 -26.20055 -25.02619 -23.88408 -22.40750 -20.88661 -20.02709 -19.25538 -18.95387 -18.10107 -17.84799 -17.13258 -16.92643 -16.53320 -16.34011 -15.79332 -15.69643 -15.50490 -15.29746 -15.07104 -14.67511 -14.40280 -13.98791 -13.86775 -13.66435 -13.41445 -13.14114 -13.06925 -13.02881 -12.35405 -12.15395 -12.03261 -11.94014 -11.90715 -11.51725 -11.32695 -11.06496 -11.00746 -10.91452 -10.81286 -10.36304 -10.27589 -10.23980 -10.04049 -9.99320 -9.53985 -9.49966 -8.69420 -8.26262 -7.98776 -6.44039 -3.84930 1.97345 2.23830 2.34760 2.66181 3.14523 3.25330 3.32380 3.47730 3.63871 3.86464 3.95632 4.04908 4.18474 4.20572 4.30472 4.49442 4.56061 4.71898 4.77639 4.84444 4.90502 5.03500 5.07204 5.21357 5.23619 5.30507 5.35234 5.40327 5.43517 5.45458 5.60060 5.65898 5.75303 5.80733 5.93976 6.10374 6.22008 6.55172 6.60355 6.99106 7.10314 7.10627 7.38860 7.53098 7.78315 8.03356 8.58690 9.15622 9.51477 10.02968 10.73721 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.001808 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.078914 B =15487.206287 C =17044.798663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.195 4.195 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.141 4.141 7 C 0.521 3.479 8 O -0.540 6.540 9 N -0.727 5.727 10 C 0.101 3.899 11 C 0.087 3.913 12 O -0.521 6.521 13 C -0.001 4.001 14 N -0.440 5.440 15 C 0.007 3.993 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.018 3.982 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.401 0.599 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.371 0.629 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.101 0.899 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 -20.904 -9.107 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.099 3.901 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.181 4.181 7 C 0.308 3.692 8 O -0.417 6.417 9 N -0.381 5.381 10 C -0.024 4.024 11 C 0.045 3.955 12 O -0.326 6.326 13 C -0.130 4.130 14 N -0.163 5.163 15 C -0.125 4.125 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.112 4.112 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.236 0.764 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.219 0.781 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.596 -20.833 -8.303 26.226 hybrid contribution -0.389 1.081 -1.031 1.544 sum -13.984 -19.752 -9.334 25.939 Atomic orbital electron populations 1.25010 0.95927 1.00150 0.97946 1.22548 0.93904 1.01020 1.02026 1.19050 0.84664 0.98840 0.87544 1.87868 1.21601 1.83623 1.37505 1.22150 0.79911 1.01035 0.96800 1.21469 0.92177 1.04900 0.99565 1.20361 0.90117 0.76945 0.81793 1.90738 1.65386 1.47091 1.38442 1.45868 1.07793 1.64264 1.20129 1.22058 0.80176 1.02564 0.97554 1.23059 0.95659 0.92138 0.84673 1.86642 1.24974 1.79860 1.41074 1.24526 0.96466 0.93505 0.98469 1.68477 1.02196 0.99875 1.45704 1.22515 0.98495 0.93123 0.98362 1.19650 0.86971 0.84758 0.85772 1.90523 1.25981 1.86723 1.43036 1.41875 1.24705 1.05016 1.48462 1.19748 1.09357 0.81996 1.31761 0.87875 1.25261 0.95828 0.99952 0.96883 1.69616 1.16694 1.29824 1.38125 0.85802 0.78945 0.81288 0.78318 1.19228 1.20709 1.20772 1.24127 0.92957 0.94144 0.99953 0.76105 0.90545 0.90598 0.91876 0.91959 0.87669 0.87539 0.76388 0.90179 0.90005 0.78129 0.90822 0.88222 0.88896 0.92742 0.77496 0.91903 0.88112 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 19.25 29.55 0.57 -0.62 16 2 C -0.19 -1.62 13.73 -37.12 -0.51 -2.13 16 3 C 0.17 1.23 6.41 34.37 0.22 1.45 16 4 O -0.39 -3.37 10.30 -35.23 -0.36 -3.74 16 5 C 0.08 0.59 5.23 37.15 0.19 0.78 16 6 C -0.14 -0.92 6.07 -27.89 -0.17 -1.09 16 7 C 0.52 4.71 7.83 -10.98 -0.09 4.62 16 8 O -0.54 -6.89 15.98 5.55 0.09 -6.81 16 9 N -0.73 -5.60 5.34 -60.30 -0.32 -5.92 16 10 C 0.10 0.94 5.28 -4.04 -0.02 0.92 16 11 C 0.09 0.96 1.52 -89.69 -0.14 0.82 16 12 O -0.52 -5.81 13.50 -35.23 -0.48 -6.29 16 13 C 0.00 -0.01 6.16 -2.76 -0.02 -0.02 16 14 N -0.44 -7.23 5.95 -239.59 -1.43 -8.65 16 15 C 0.01 0.12 5.31 -4.98 -0.03 0.10 16 16 C 0.44 10.42 7.59 -10.99 -0.08 10.34 16 17 O -0.58 -15.59 15.13 5.54 0.08 -15.50 16 18 N -0.56 -14.23 5.29 -10.97 -0.06 -14.29 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.02 0.21 7.38 -2.76 -0.02 0.19 16 28 H 0.22 0.69 7.80 -54.09 -0.42 0.27 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16 33 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 2.13 7.31 -40.82 -0.30 1.83 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 38 H 0.37 2.58 7.61 45.56 0.35 2.93 16 39 H 0.07 1.05 7.67 -51.93 -0.40 0.65 16 40 H 0.10 1.60 8.09 -51.93 -0.42 1.18 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.05 0.83 7.69 -51.93 -0.40 0.44 16 43 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 0.83 7.75 -51.93 -0.40 0.43 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -36.71 400.85 -7.10 -43.81 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.04 Total: 11.68 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.33 Total: 7.39 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -1.08 Total: -52.56 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.67 Total: -32.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.71 -7.10 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699912863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.032 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds