Wall clock time and date at job start Wed Apr 1 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47011 * 245.48566 * 3 2 1 5 5 C 1.42899 * 114.00219 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47438 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 O 1.42894 * 112.94182 * 53.42971 * 11 10 9 13 13 C 1.53939 * 113.73376 * 281.72718 * 11 10 9 14 14 N 1.47965 * 86.18318 * 221.92110 * 13 11 10 15 15 C 1.46896 * 111.00100 * 137.57689 * 14 13 11 16 16 C 1.50699 * 109.46970 * 70.64608 * 15 14 13 17 17 O 1.21294 * 120.00179 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00421 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00345 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00055 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00485 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47389 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47120 * 119.99950 * 23 21 19 26 26 H 1.48506 * 109.47371 * 240.00006 * 23 21 19 27 27 C 1.47972 * 90.75954 * 24.68659 * 14 13 11 28 28 H 4.38452 * 5.44396 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.46868 * 125.49001 * 3 2 1 30 30 H 1.08994 * 109.47217 * 5.48959 * 3 2 1 31 31 H 1.08998 * 109.47093 * 59.99678 * 5 4 3 32 32 H 1.09011 * 109.46622 * 300.00288 * 5 4 3 33 33 H 1.08998 * 109.47508 * 59.99606 * 6 5 4 34 34 H 1.09002 * 109.47337 * 299.99891 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 37 37 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 38 38 H 0.96702 * 114.00177 * 309.66781 * 12 11 10 39 39 H 1.09004 * 113.75478 * 336.23643 * 13 11 10 40 40 H 1.08996 * 113.76197 * 107.59918 * 13 11 10 41 41 H 1.09004 * 109.46697 * 190.64022 * 15 14 13 42 42 H 1.08997 * 109.47494 * 310.64441 * 15 14 13 43 43 H 0.97010 * 119.99656 * 359.97438 * 18 16 15 44 44 H 0.97004 * 120.00654 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.75645 * 220.99382 * 27 14 13 46 46 H 1.09000 * 113.75871 * 89.63163 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1221 0.5599 1.2258 5 6 4.5466 0.6079 1.3283 6 6 4.9408 1.2208 2.6735 7 6 6.4431 1.2708 2.7819 8 8 7.1307 0.8566 1.8727 9 7 7.0225 1.7749 3.8894 10 6 8.4829 1.8292 3.9921 11 6 8.8771 2.4466 5.3353 12 8 8.2678 1.7916 6.4496 13 6 8.7539 3.9806 5.3721 14 7 10.0419 3.9677 6.1002 15 6 10.9326 5.0294 5.6131 16 6 10.4011 6.3704 6.0494 17 8 9.3805 6.4353 6.7015 18 7 11.0598 7.4977 5.7150 19 6 10.5760 8.7176 6.1115 20 1 9.6668 8.7754 6.6914 21 6 11.2556 9.8797 5.7671 22 7 12.3616 9.8094 5.0610 23 14 10.5960 11.5420 6.3067 24 1 9.3456 11.3498 7.0843 25 1 11.6062 12.2236 7.1554 26 1 10.3122 12.3742 5.1099 27 6 10.3926 2.6630 5.4967 28 1 -1.0501 0.0001 -0.0003 29 1 3.0091 0.5974 -0.8367 30 1 3.0099 -1.0221 -0.0983 31 1 4.9488 1.2174 0.5191 32 1 4.9502 -0.4023 1.2574 33 1 4.5387 0.6109 3.4825 34 1 4.5372 2.2308 2.7449 35 1 6.4725 2.1059 4.6166 36 1 8.8897 0.8203 3.9226 37 1 8.8818 2.4384 3.1811 38 1 7.3110 1.6797 6.3650 39 1 8.8095 4.4492 4.3895 40 1 7.9155 4.3396 5.9689 41 1 11.9313 4.8831 6.0247 42 1 10.9793 4.9937 4.5247 43 1 11.8764 7.4458 5.1938 44 1 12.8362 10.6206 4.8209 45 1 10.8635 1.9694 6.1933 46 1 10.9276 2.7463 4.5507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699912863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:00 Heat of formation + Delta-G solvation = -98.911555 kcal Electronic energy + Delta-G solvation = -28140.337058 eV Core-core repulsion = 23839.138146 eV Total energy + Delta-G solvation = -4301.198913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82046 -40.72782 -39.72927 -39.02856 -36.95245 -35.90157 -35.35676 -34.46014 -33.31414 -32.69661 -31.43755 -28.87905 -27.83741 -27.25955 -26.73114 -24.75587 -23.51992 -21.58874 -21.02990 -20.95824 -19.90977 -19.49188 -18.71759 -17.94667 -17.83767 -17.50164 -17.18882 -17.03261 -16.66014 -16.58401 -16.39177 -16.12185 -15.85076 -15.65136 -15.34286 -15.11527 -14.73033 -14.47626 -14.16493 -14.08149 -13.71269 -13.60309 -13.46750 -13.36334 -12.98030 -12.93720 -12.67216 -12.50314 -12.45854 -12.42009 -12.13364 -11.81653 -11.55843 -11.52069 -11.46480 -11.05482 -10.95554 -10.58808 -10.35295 -10.23619 -10.02706 -9.68160 -8.48177 -5.96881 1.35257 1.40760 1.41767 1.54024 1.54724 1.81071 2.00804 2.03206 2.27443 2.68077 2.91223 2.95874 3.18620 3.26022 3.33783 3.55271 3.62559 3.70116 4.00480 4.04120 4.19606 4.21933 4.28636 4.29873 4.41805 4.43502 4.46236 4.50389 4.56301 4.62195 4.70265 4.78005 4.80355 4.82981 4.98009 5.02257 5.24775 5.37397 5.40651 5.84930 6.04331 6.05386 6.37033 6.58564 6.58582 6.69674 7.11369 7.11644 7.54378 8.10050 8.69395 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.001808 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.078914 B =15487.206287 C =17044.798663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.168 3.832 4 O -0.401 6.401 5 C 0.078 3.922 6 C -0.134 4.134 7 C 0.523 3.477 8 O -0.579 6.579 9 N -0.718 5.718 10 C 0.111 3.889 11 C 0.113 3.887 12 O -0.535 6.535 13 C -0.006 4.006 14 N -0.475 5.475 15 C 0.020 3.980 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.020 3.980 28 H 0.252 0.748 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.414 0.586 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.389 0.611 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.106 0.894 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 -21.656 -9.534 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.093 3.907 4 O -0.322 6.322 5 C 0.001 3.999 6 C -0.174 4.174 7 C 0.311 3.689 8 O -0.459 6.459 9 N -0.372 5.372 10 C -0.014 4.014 11 C 0.070 3.930 12 O -0.342 6.342 13 C -0.135 4.135 14 N -0.198 5.198 15 C -0.112 4.112 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.108 4.108 28 H 0.269 0.731 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.251 0.749 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.239 0.761 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.124 0.876 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.034 -21.598 -8.721 27.194 hybrid contribution -0.321 1.263 -0.867 1.566 sum -14.355 -20.335 -9.588 26.674 Atomic orbital electron populations 1.25873 0.96866 0.98778 0.96458 1.23120 0.94929 1.02413 1.03473 1.19234 0.84477 0.99762 0.87269 1.87829 1.21996 1.83922 1.38424 1.22143 0.79521 1.00998 0.97199 1.21447 0.90295 1.05904 0.99731 1.20728 0.90926 0.76039 0.81242 1.90724 1.66382 1.48963 1.39844 1.45784 1.07405 1.63695 1.20316 1.21875 0.81032 1.02425 0.96081 1.22708 0.95087 0.89736 0.85420 1.86607 1.26755 1.79476 1.41400 1.24510 0.95024 0.96315 0.97652 1.68453 1.02903 1.01174 1.47301 1.22404 0.99015 0.89879 0.99884 1.20732 0.86008 0.86388 0.84151 1.90490 1.27713 1.87706 1.44487 1.41942 1.25104 1.05035 1.49011 1.19688 1.09487 0.83863 1.33246 0.90399 1.26022 0.95879 1.02815 0.96467 1.69672 1.17158 1.31037 1.38202 0.84880 0.78171 0.77104 0.78229 1.19854 1.19635 1.19545 1.24255 0.93940 0.91603 1.01028 0.73141 0.89613 0.89270 0.92568 0.92018 0.85619 0.86430 0.74895 0.89716 0.90412 0.76068 0.90855 0.90683 0.87280 0.90100 0.77015 0.91295 0.87568 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 19.25 74.32 1.43 -0.60 16 2 C -0.24 -3.85 13.73 31.13 0.43 -3.42 16 3 C 0.17 2.31 6.41 70.18 0.45 2.76 16 4 O -0.40 -6.78 10.30 -148.98 -1.53 -8.31 16 5 C 0.08 1.13 5.23 71.98 0.38 1.51 16 6 C -0.13 -1.55 6.07 29.85 0.18 -1.37 16 7 C 0.52 8.74 7.83 87.66 0.69 9.42 16 8 O -0.58 -14.35 15.98 -3.04 -0.05 -14.40 16 9 N -0.72 -9.79 5.34 -463.07 -2.47 -12.26 16 10 C 0.11 1.84 5.28 86.38 0.46 2.30 16 11 C 0.11 2.28 1.52 -10.15 -0.02 2.27 16 12 O -0.54 -10.96 13.50 -148.98 -2.01 -12.98 16 13 C -0.01 -0.16 6.16 86.41 0.53 0.37 16 14 N -0.48 -15.13 5.95 -915.11 -5.44 -20.57 16 15 C 0.02 0.67 5.31 85.56 0.45 1.12 16 16 C 0.44 20.94 7.59 87.66 0.67 21.61 16 17 O -0.62 -34.23 15.13 -3.07 -0.05 -34.28 16 18 N -0.57 -29.42 5.29 -306.99 -1.62 -31.05 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 23 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 C 0.02 0.44 7.38 86.40 0.64 1.08 16 28 H 0.25 1.01 7.80 -4.41 -0.03 0.97 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.87 8.10 -2.39 -0.02 0.86 16 32 H 0.06 0.89 8.10 -2.38 -0.02 0.87 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.41 3.58 7.31 -92.71 -0.68 2.91 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 38 H 0.39 4.64 7.61 -74.06 -0.56 4.08 16 39 H 0.07 2.04 7.67 -2.38 -0.02 2.03 16 40 H 0.07 2.46 8.09 -2.39 -0.02 2.44 16 41 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 42 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 43 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 44 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 45 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.11 1.82 7.75 -2.39 -0.02 1.81 16 Total: -1.00 -80.53 400.85 -4.25 -84.78 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.95 Total: 34.60 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 7.56 Total: 18.72 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -9.25 Total: -113.11 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -3.64 Total: -69.96 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -80.53 -4.25 -84.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699912863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.127 kcal (2) G-P(sol) polarization free energy of solvation -80.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds