Wall clock time and date at job start Tue Mar 31 2020 22:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21765 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.46126 * 120.00416 * 180.02562 * 7 6 5 10 10 C 1.37820 * 126.03673 * 179.97438 * 9 7 6 11 11 C 1.39914 * 106.68166 * 179.97438 * 10 9 7 12 12 C 1.36086 * 107.17530 * 359.97438 * 11 10 9 13 13 O 1.35366 * 125.57827 * 180.02562 * 12 11 10 14 14 C 1.42900 * 117.00139 * 180.02562 * 13 12 11 15 15 O 1.34012 * 108.84201 * 359.77200 * 12 11 10 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99752 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99778 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47044 * 89.99781 * 25 23 21 27 27 H 1.48498 * 109.46649 * 209.99599 * 25 23 21 28 28 H 1.48494 * 109.47092 * 329.99186 * 25 23 21 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08007 * 126.66096 * 359.96159 * 10 9 7 38 38 H 1.08003 * 126.40912 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47499 * 59.99737 * 14 13 12 40 40 H 1.08999 * 109.47210 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.46987 * 299.99564 * 14 13 12 42 42 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 43 43 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 44 44 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 45 45 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 46 46 H 0.97002 * 119.99768 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1649 2.1451 0.2832 9 6 5.8830 4.4317 -0.0151 10 6 7.2024 4.8237 0.0557 11 6 7.2181 6.2130 -0.1092 12 6 5.9276 6.6128 -0.2728 13 8 5.5164 7.8884 -0.4629 14 6 4.1115 8.1015 -0.6137 15 8 5.1310 5.5364 -0.2205 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 2.2686 2.5841 -8.3375 25 14 3.4746 0.3044 -7.3275 26 1 2.5258 -0.8242 -7.5044 27 1 4.4123 0.3478 -8.4782 28 1 4.2420 0.1137 -6.0706 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 8.0582 4.1828 0.2090 38 1 8.0911 6.8489 -0.1078 39 1 3.5935 7.7572 0.2814 40 1 3.9187 9.1644 -0.7592 41 1 3.7505 7.5455 -1.4790 42 1 0.6569 2.1788 -1.3353 43 1 1.7652 0.3910 -2.4816 44 1 3.2964 1.2785 -2.2916 45 1 2.8442 0.8531 -4.9109 46 1 2.5744 2.2482 -9.1946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715083734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:45 Heat of formation + Delta-G solvation = -87.489175 kcal Electronic energy + Delta-G solvation = -29841.792166 eV Core-core repulsion = 25541.088565 eV Total energy + Delta-G solvation = -4300.703601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.84754 -39.77675 -38.84251 -38.51832 -37.41796 -34.33608 -33.95963 -33.25476 -31.94868 -31.60509 -30.14643 -28.72647 -27.37505 -26.62941 -24.25373 -23.80194 -22.37715 -22.04080 -20.57742 -20.15741 -19.36908 -18.97600 -18.44605 -17.70376 -17.20940 -16.82151 -16.12045 -15.73816 -15.49725 -15.37277 -15.06048 -14.75700 -14.56282 -14.39695 -14.07451 -13.92992 -13.39556 -13.33982 -13.21136 -13.12560 -13.03948 -12.68190 -12.54119 -12.35647 -12.31643 -11.90961 -11.86744 -11.73172 -11.50287 -11.20297 -10.97662 -10.91344 -10.59762 -10.31664 -10.15814 -9.98861 -9.57856 -9.15373 -8.66319 -8.23115 -8.19896 -8.17556 -6.32357 -3.83635 0.96608 2.07616 2.23819 2.89837 3.03382 3.06417 3.15021 3.15846 3.23168 3.72713 4.05643 4.10470 4.49251 4.63518 4.68992 4.81293 4.84104 4.88965 4.93942 4.94664 5.14581 5.16550 5.20756 5.30455 5.37720 5.43410 5.47593 5.50376 5.61528 5.67161 5.68581 5.77348 5.78222 5.92247 5.98340 6.08700 6.14629 6.28611 6.40376 6.93604 6.97861 7.44254 7.50606 7.56911 8.08854 8.12934 8.58539 8.93748 9.41446 9.81589 10.80749 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007591 B = 0.003683 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.498138 B = 7601.357768 C = 9394.729146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.092 0.908 5 C 0.125 3.875 6 N -0.704 5.704 7 C 0.606 3.394 8 O -0.532 6.532 9 C -0.100 4.100 10 C -0.084 4.084 11 C -0.245 4.245 12 C 0.218 3.782 13 O -0.263 6.263 14 C 0.017 3.983 15 O -0.184 6.184 16 N -0.659 5.659 17 C 0.040 3.960 18 C 0.451 3.549 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.415 0.585 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.354 0.646 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 1.045 20.625 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.110 0.890 5 C 0.001 3.999 6 N -0.355 5.355 7 C 0.393 3.607 8 O -0.412 6.412 9 C -0.150 4.150 10 C -0.104 4.104 11 C -0.265 4.265 12 C 0.121 3.879 13 O -0.177 6.177 14 C -0.077 4.077 15 O -0.084 6.084 16 N -0.292 5.292 17 C -0.093 4.093 18 C 0.237 3.763 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.704 3.296 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.184 0.816 38 H 0.180 0.820 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.175 0.825 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.202 0.798 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.125 1.753 20.519 21.003 hybrid contribution -0.240 -1.643 -0.568 1.755 sum 3.884 0.110 19.951 20.326 Atomic orbital electron populations 1.21761 0.95153 1.02048 1.02109 1.22210 0.96864 0.97792 1.03123 1.21938 0.94184 0.93722 0.93959 0.88996 1.21481 0.93077 0.83203 1.02096 1.45705 1.06879 1.10706 1.72178 1.16330 0.82673 0.84568 0.77117 1.90883 1.56349 1.42707 1.51224 1.21887 0.90231 0.85182 1.17699 1.21953 0.95941 0.94255 0.98277 1.20751 0.94328 0.95207 1.16166 1.20824 0.88654 0.79505 0.98894 1.86390 1.27545 1.16485 1.87280 1.23226 0.77355 1.04218 1.02879 1.83998 1.38008 1.14913 1.71488 1.60187 1.18245 1.51223 0.99522 1.21811 1.01100 0.95534 0.90830 1.19682 0.84943 0.87812 0.83882 1.90554 1.43834 1.24183 1.86129 1.42213 1.51190 1.22830 1.06761 1.19410 1.34372 1.07339 0.82221 0.86332 1.25026 0.97796 0.98131 0.95100 1.69617 1.45773 1.38547 0.98184 0.86697 0.80487 0.83846 0.78562 1.19626 1.20108 1.19449 0.92475 0.92413 0.92439 0.91073 0.91163 0.90814 0.91087 0.74820 0.81613 0.81964 0.91773 0.87136 0.91084 0.82487 0.93237 0.89398 0.79753 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.71 37.16 0.36 -0.94 16 2 C -0.16 -1.39 5.17 -26.73 -0.14 -1.53 16 3 C 0.07 0.73 2.70 -67.71 -0.18 0.54 16 4 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 5 C 0.13 1.41 4.70 -4.05 -0.02 1.39 16 6 N -0.70 -9.06 5.38 -61.79 -0.33 -9.39 16 7 C 0.61 8.92 7.77 -13.09 -0.10 8.82 16 8 O -0.53 -8.98 16.87 5.13 0.09 -8.89 16 9 C -0.10 -1.39 7.15 -36.57 -0.26 -1.65 16 10 C -0.08 -1.03 10.66 -39.11 -0.42 -1.45 16 11 C -0.24 -2.81 10.89 -39.73 -0.43 -3.24 16 12 C 0.22 2.74 7.86 29.96 0.24 2.97 16 13 O -0.26 -2.95 10.55 -41.02 -0.43 -3.39 16 14 C 0.02 0.15 10.74 101.05 1.09 1.23 16 15 O -0.18 -2.50 9.88 -19.28 -0.19 -2.69 16 16 N -0.66 -8.85 5.36 -107.99 -0.58 -9.43 16 17 C 0.04 0.63 5.34 -4.98 -0.03 0.60 16 18 C 0.45 10.00 7.83 -10.99 -0.09 9.91 16 19 O -0.57 -14.67 15.90 5.54 0.09 -14.58 16 20 N -0.59 -14.04 5.09 -10.97 -0.06 -14.09 16 21 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 24 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 25 Si 0.88 19.58 27.74 -169.99 -4.71 14.87 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.55 6.52 56.52 0.37 -5.19 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.56 6.85 -51.93 -0.36 0.21 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.68 6.23 -51.93 -0.32 0.36 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.88 6.57 -51.92 -0.34 0.54 16 36 H 0.42 5.32 7.89 -40.82 -0.32 5.00 16 37 H 0.17 1.77 8.06 -52.48 -0.42 1.34 16 38 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.35 4.86 7.23 -39.29 -0.28 4.58 16 43 H 0.05 0.68 6.49 -51.93 -0.34 0.35 16 44 H 0.09 1.36 6.15 -51.93 -0.32 1.04 16 45 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -34.26 387.76 -6.05 -40.31 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -6.30 Total: 17.48 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.23 Total: 8.97 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.19 Total: -57.93 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.45 Total: -29.55 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.26 -6.05 -40.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.180 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds