Wall clock time and date at job start Tue Mar 31 2020 22:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21765 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.46126 * 120.00416 * 180.02562 * 7 6 5 10 10 C 1.37820 * 126.03673 * 179.97438 * 9 7 6 11 11 C 1.39914 * 106.68166 * 179.97438 * 10 9 7 12 12 C 1.36086 * 107.17530 * 359.97438 * 11 10 9 13 13 O 1.35366 * 125.57827 * 180.02562 * 12 11 10 14 14 C 1.42900 * 117.00139 * 180.02562 * 13 12 11 15 15 O 1.34012 * 108.84201 * 359.77200 * 12 11 10 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99752 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99778 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47044 * 89.99781 * 25 23 21 27 27 H 1.48498 * 109.46649 * 209.99599 * 25 23 21 28 28 H 1.48494 * 109.47092 * 329.99186 * 25 23 21 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08007 * 126.66096 * 359.96159 * 10 9 7 38 38 H 1.08003 * 126.40912 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47499 * 59.99737 * 14 13 12 40 40 H 1.08999 * 109.47210 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.46987 * 299.99564 * 14 13 12 42 42 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 43 43 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 44 44 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 45 45 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 46 46 H 0.97002 * 119.99768 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1649 2.1451 0.2832 9 6 5.8830 4.4317 -0.0151 10 6 7.2024 4.8237 0.0557 11 6 7.2181 6.2130 -0.1092 12 6 5.9276 6.6128 -0.2728 13 8 5.5164 7.8884 -0.4629 14 6 4.1115 8.1015 -0.6137 15 8 5.1310 5.5364 -0.2205 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 2.2686 2.5841 -8.3375 25 14 3.4746 0.3044 -7.3275 26 1 2.5258 -0.8242 -7.5044 27 1 4.4123 0.3478 -8.4782 28 1 4.2420 0.1137 -6.0706 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 8.0582 4.1828 0.2090 38 1 8.0911 6.8489 -0.1078 39 1 3.5935 7.7572 0.2814 40 1 3.9187 9.1644 -0.7592 41 1 3.7505 7.5455 -1.4790 42 1 0.6569 2.1788 -1.3353 43 1 1.7652 0.3910 -2.4816 44 1 3.2964 1.2785 -2.2916 45 1 2.8442 0.8531 -4.9109 46 1 2.5744 2.2482 -9.1946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715083734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:44 Heat of formation + Delta-G solvation = -114.927148 kcal Electronic energy + Delta-G solvation = -29842.981966 eV Core-core repulsion = 25541.088565 eV Total energy + Delta-G solvation = -4301.893401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.81340 -40.88826 -40.27334 -39.51371 -38.66927 -36.02022 -35.30479 -34.22303 -33.76797 -32.86184 -31.09953 -29.67162 -28.47756 -27.80044 -25.91794 -24.74888 -23.28416 -22.96676 -21.74608 -21.33462 -20.93605 -20.26149 -19.84784 -18.68972 -18.30883 -18.12784 -17.23653 -17.12168 -16.67413 -16.38791 -16.33012 -16.00544 -15.76221 -15.45565 -15.29041 -15.16643 -14.82835 -14.43383 -14.31054 -14.28732 -14.06066 -14.04517 -13.97404 -13.57004 -13.22533 -13.05905 -12.96031 -12.74152 -12.54508 -12.44580 -12.32845 -12.01575 -11.84245 -11.67128 -11.52244 -11.42808 -11.10819 -10.45323 -10.25692 -10.18088 -9.35696 -9.15747 -8.43147 -6.03142 -0.05372 1.13445 1.28196 1.29783 1.31894 1.40903 1.94666 1.98429 2.11202 2.20155 2.28561 2.72667 3.13655 3.41188 3.68120 3.74352 3.81756 4.00248 4.15078 4.16105 4.19168 4.22732 4.32044 4.33636 4.40673 4.47851 4.54014 4.57742 4.65287 4.72856 4.80566 4.83279 4.93147 5.13726 5.24405 5.25235 5.29953 5.39500 5.45258 5.51069 5.88486 6.00856 6.03154 6.36971 6.45067 6.58122 6.86890 7.01907 7.38668 7.94792 8.74429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007591 B = 0.003683 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3687.498138 B = 7601.357768 C = 9394.729146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.083 3.917 4 H 0.110 0.890 5 C 0.122 3.878 6 N -0.700 5.700 7 C 0.603 3.397 8 O -0.560 6.560 9 C -0.129 4.129 10 C -0.078 4.078 11 C -0.242 4.242 12 C 0.208 3.792 13 O -0.267 6.267 14 C 0.012 3.988 15 O -0.194 6.194 16 N -0.671 5.671 17 C 0.058 3.942 18 C 0.451 3.549 19 O -0.608 6.608 20 N -0.594 5.594 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.959 3.041 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.238 1.238 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.181 0.819 38 H 0.188 0.812 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.054 0.946 42 H 0.353 0.647 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.387 0.613 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -1.039 22.590 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C -0.027 4.027 4 H 0.128 0.872 5 C -0.001 4.001 6 N -0.349 5.349 7 C 0.391 3.609 8 O -0.442 6.442 9 C -0.179 4.179 10 C -0.099 4.099 11 C -0.262 4.262 12 C 0.110 3.890 13 O -0.181 6.181 14 C -0.081 4.081 15 O -0.095 6.095 16 N -0.305 5.305 17 C -0.074 4.074 18 C 0.239 3.761 19 O -0.492 6.492 20 N -0.236 5.236 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.211 4.211 24 N -0.574 5.574 25 Si 0.779 3.221 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.162 1.162 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.198 0.802 38 H 0.205 0.795 39 H 0.091 0.909 40 H 0.158 0.842 41 H 0.072 0.928 42 H 0.174 0.826 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.222 0.778 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.232 -0.338 22.521 23.123 hybrid contribution -0.691 -0.805 -1.115 1.539 sum 4.541 -1.143 21.406 21.912 Atomic orbital electron populations 1.21755 0.94961 1.02390 1.01874 1.22166 0.96882 0.96482 1.03887 1.21976 0.93391 0.94866 0.92474 0.87226 1.21646 0.93643 0.82168 1.02678 1.45761 1.06359 1.11466 1.71312 1.16451 0.82980 0.84642 0.76850 1.90853 1.56967 1.43507 1.52875 1.21950 0.90998 0.85228 1.19700 1.22264 0.95834 0.94895 0.96898 1.21111 0.94791 0.95136 1.15131 1.21217 0.89149 0.79760 0.98844 1.86395 1.28898 1.15725 1.87063 1.23444 0.76197 1.05905 1.02579 1.83965 1.38477 1.15170 1.71852 1.60137 1.18176 1.52077 1.00064 1.21631 1.02037 0.95649 0.88133 1.20951 0.82598 0.87324 0.85270 1.90533 1.45218 1.26384 1.87075 1.42076 1.52158 1.23331 1.06029 1.18996 1.35307 1.06444 0.84764 0.92431 1.26034 0.98476 1.02763 0.93818 1.69791 1.47255 1.41193 0.99148 0.85445 0.78988 0.77819 0.79817 1.17804 1.20013 1.16151 0.91456 0.94018 0.91759 0.91560 0.89149 0.89223 0.91918 0.74900 0.80159 0.79453 0.90874 0.84204 0.92758 0.82614 0.90239 0.88366 0.77807 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.71 71.98 0.70 -1.46 16 2 C -0.15 -2.17 5.17 30.60 0.16 -2.01 16 3 C 0.08 1.43 2.70 44.91 0.12 1.55 16 4 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 5 C 0.12 2.47 4.70 86.38 0.41 2.87 16 6 N -0.70 -17.31 5.38 -467.60 -2.52 -19.82 16 7 C 0.60 17.44 7.77 86.29 0.67 18.11 16 8 O -0.56 -18.51 16.87 -4.56 -0.08 -18.59 16 9 C -0.13 -3.56 7.15 24.22 0.17 -3.39 16 10 C -0.08 -1.86 10.66 22.58 0.24 -1.62 16 11 C -0.24 -5.26 10.89 22.18 0.24 -5.02 16 12 C 0.21 5.10 7.86 67.32 0.53 5.63 16 13 O -0.27 -5.80 10.55 -64.35 -0.68 -6.48 16 14 C 0.01 0.21 10.74 113.37 1.22 1.42 16 15 O -0.19 -5.28 9.88 13.42 0.13 -5.14 16 16 N -0.67 -17.05 5.36 -495.58 -2.65 -19.70 16 17 C 0.06 1.72 5.34 85.55 0.46 2.17 16 18 C 0.45 20.06 7.83 87.65 0.69 20.75 16 19 O -0.61 -32.69 15.90 -3.08 -0.05 -32.74 16 20 N -0.59 -28.25 5.09 -306.99 -1.56 -29.82 16 21 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 22 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.93 -56.48 13.96 21.66 0.30 -56.18 16 25 Si 0.96 39.58 27.74 68.60 1.90 41.49 16 26 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 27 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.24 -8.54 6.52 99.48 0.65 -7.90 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.73 6.85 -2.38 -0.02 0.71 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.02 6.23 -2.39 -0.01 1.01 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.40 6.57 -2.38 -0.02 1.39 16 36 H 0.41 10.39 7.89 -92.70 -0.73 9.66 16 37 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.35 9.31 7.23 -89.70 -0.65 8.66 16 43 H 0.08 1.94 6.49 -2.39 -0.02 1.93 16 44 H 0.10 2.80 6.15 -2.38 -0.01 2.78 16 45 H 0.39 15.58 5.76 -92.70 -0.53 15.04 16 46 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.26 387.76 0.80 -78.46 By element: Atomic # 1 Polarization: 48.94 SS G_CDS: -0.92 Total: 48.02 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.92 Total: 20.50 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -6.43 Total: -125.52 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -0.67 Total: -62.95 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.90 Total: 41.49 kcal Total: -79.26 0.80 -78.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.465 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds