Wall clock time and date at job start Tue Mar 31 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.09007 * 109.47094 * 302.96465 * 3 2 1 5 5 C 1.53008 * 109.46689 * 182.97100 * 3 2 1 6 6 N 1.46503 * 109.46679 * 185.00086 * 5 3 2 7 7 C 1.34780 * 119.99776 * 179.97438 * 6 5 3 8 8 O 1.21770 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.46122 * 120.00097 * 179.97438 * 7 6 5 10 10 C 1.37828 * 126.03523 * 179.97438 * 9 7 6 11 11 C 1.39904 * 106.67986 * 179.97438 * 10 9 7 12 12 C 1.36093 * 107.17905 * 0.02562 * 11 10 9 13 13 O 1.35368 * 125.58065 * 180.02562 * 12 11 10 14 14 C 1.42896 * 117.00229 * 179.97438 * 13 12 11 15 15 O 1.34012 * 108.84008 * 359.76563 * 12 11 10 16 16 N 1.46890 * 109.47450 * 62.96949 * 3 2 1 17 17 C 1.46900 * 111.00363 * 65.52026 * 16 3 2 18 18 C 1.50698 * 109.47600 * 182.18844 * 17 16 3 19 19 O 1.21296 * 119.99458 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00298 * 180.02562 * 18 17 16 21 21 C 1.37089 * 119.99985 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00530 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00140 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99809 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00448 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46858 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46925 * 120.00291 * 25 23 21 28 28 H 1.48490 * 109.47244 * 240.00467 * 25 23 21 29 29 H 1.09005 * 109.46931 * 294.77718 * 1 2 3 30 30 H 1.08999 * 109.47166 * 54.77202 * 1 2 3 31 31 H 1.08994 * 109.47328 * 174.78020 * 1 2 3 32 32 H 1.08998 * 109.46912 * 240.00002 * 2 1 3 33 33 H 1.08997 * 109.46883 * 120.00164 * 2 1 3 34 34 H 1.08999 * 109.46573 * 304.99557 * 5 3 2 35 35 H 1.09001 * 109.47301 * 64.99914 * 5 3 2 36 36 H 0.96996 * 120.00016 * 359.97438 * 6 5 3 37 37 H 1.08004 * 126.66018 * 359.96797 * 10 9 7 38 38 H 1.07997 * 126.40924 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.47370 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47059 * 300.00420 * 14 13 12 41 41 H 1.09003 * 109.46724 * 59.99851 * 14 13 12 42 42 H 1.00908 * 111.00187 * 189.47504 * 16 3 2 43 43 H 1.09011 * 109.46801 * 302.18360 * 17 16 3 44 44 H 1.08994 * 109.47060 * 62.18272 * 17 16 3 45 45 H 0.96996 * 119.99635 * 359.97438 * 20 18 17 46 46 H 0.96998 * 119.99929 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8623 5 6 3.5682 1.4431 -0.0748 6 7 4.0624 2.8170 0.0454 7 6 5.3871 3.0624 0.0068 8 8 6.1731 2.1422 -0.1283 9 6 5.8801 4.4328 0.1261 10 6 7.2015 4.8240 0.1034 11 6 7.2108 6.2156 0.2476 12 6 5.9148 6.6176 0.3520 13 8 5.4965 7.8959 0.5045 14 6 4.0867 8.1109 0.5945 15 8 5.1202 5.5413 0.2734 16 7 1.6098 2.1140 1.2336 17 6 2.2441 1.5077 2.4117 18 6 1.7389 2.1858 3.6591 19 8 0.9303 3.0860 3.5749 20 7 2.1863 1.7927 4.8682 21 6 1.7270 2.4099 6.0029 22 1 1.0071 3.2114 5.9280 23 6 2.1878 2.0043 7.2494 24 7 3.0642 1.0294 7.3406 25 14 1.5626 2.8458 8.7956 26 1 0.5898 3.9045 8.4240 27 1 0.8963 1.8460 9.6683 28 1 2.7043 3.4555 9.5235 29 1 -0.3633 0.4307 0.9331 30 1 -0.3633 0.5928 -0.8394 31 1 -0.3634 -1.0233 -0.0935 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9719 0.8393 0.7380 35 1 3.8854 1.0250 -1.0301 36 1 3.4363 3.5500 0.1527 37 1 8.0626 4.1811 -0.0045 38 1 8.0832 6.8517 0.2715 39 1 3.8885 9.1760 0.7139 40 1 3.6056 7.7519 -0.3153 41 1 3.6907 7.5687 1.4532 42 1 1.7984 3.1044 1.1909 43 1 1.9989 0.4462 2.4505 44 1 3.3252 1.6286 2.3449 45 1 2.8331 1.0730 4.9355 46 1 3.3862 0.7465 8.2107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715083742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:48 Heat of formation + Delta-G solvation = -92.781270 kcal Electronic energy + Delta-G solvation = -29795.090418 eV Core-core repulsion = 25494.157334 eV Total energy + Delta-G solvation = -4300.933083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.96868 -39.93348 -38.84871 -38.46562 -37.27125 -34.28043 -33.91685 -33.35667 -31.99117 -31.19838 -30.17195 -28.63649 -27.40676 -26.45250 -24.35563 -23.83942 -22.42528 -22.12996 -20.66286 -20.21456 -19.23438 -19.03520 -18.00100 -17.92647 -17.32695 -16.84186 -16.21395 -15.66657 -15.60040 -15.41096 -14.98317 -14.72193 -14.41959 -14.29459 -14.00492 -13.73624 -13.50640 -13.47010 -13.28796 -13.19139 -13.16255 -12.70986 -12.46787 -12.18117 -11.93786 -11.85621 -11.68660 -11.48652 -11.32976 -11.06664 -10.90177 -10.60867 -10.41236 -10.35661 -10.26444 -10.23319 -9.52837 -9.34366 -8.51994 -8.31777 -8.12159 -7.97026 -6.42328 -3.83334 0.84254 1.95138 2.13301 2.76571 3.03013 3.06583 3.15337 3.25927 3.32668 3.89385 4.07057 4.29717 4.52467 4.57237 4.65701 4.74392 4.82156 4.86045 5.05508 5.08764 5.17507 5.25153 5.26160 5.32965 5.37914 5.49415 5.53589 5.60219 5.73936 5.78408 5.88242 5.96636 6.04505 6.06342 6.12324 6.21434 6.26898 6.29073 6.53098 6.81883 7.10485 7.23419 7.50889 7.54350 7.91112 8.05142 8.60037 9.16967 9.53505 10.04522 10.75394 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007334 B = 0.003594 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.029817 B = 7789.292792 C = 9981.070167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.079 3.921 6 N -0.720 5.720 7 C 0.610 3.390 8 O -0.521 6.521 9 C -0.105 4.105 10 C -0.079 4.079 11 C -0.243 4.243 12 C 0.220 3.780 13 O -0.262 6.262 14 C 0.017 3.983 15 O -0.188 6.188 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.441 3.559 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.402 0.598 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.344 0.656 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 6.207 -17.859 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.046 4.046 6 N -0.371 5.371 7 C 0.398 3.602 8 O -0.400 6.400 9 C -0.155 4.155 10 C -0.099 4.099 11 C -0.263 4.263 12 C 0.123 3.877 13 O -0.176 6.176 14 C -0.077 4.077 15 O -0.088 6.088 16 N -0.284 5.284 17 C -0.090 4.090 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.185 0.815 38 H 0.182 0.818 39 H 0.130 0.870 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.164 0.836 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.732 5.855 -17.741 19.052 hybrid contribution 0.655 0.705 0.962 1.360 sum 4.387 6.561 -16.780 18.543 Atomic orbital electron populations 1.21615 0.94567 1.00601 1.03094 1.21501 0.97386 0.94146 1.02079 1.22002 0.90134 0.97379 0.93973 0.89268 1.22295 0.96751 0.82466 1.03107 1.45841 1.06796 1.10358 1.74130 1.16282 0.82514 0.84651 0.76797 1.90907 1.55803 1.42582 1.50662 1.21863 0.90039 0.84879 1.18702 1.21983 0.96013 0.94285 0.97639 1.20775 0.94219 0.95132 1.16184 1.20829 0.88586 0.79417 0.98902 1.86404 1.27084 1.16139 1.87958 1.23231 0.77200 1.04304 1.02970 1.83963 1.37855 1.14797 1.72207 1.60218 1.60844 1.07385 0.99950 1.21787 0.96598 1.00077 0.90491 1.19787 0.86161 0.87079 0.84322 1.90514 1.36826 1.33038 1.86525 1.41866 1.39708 1.33705 1.04647 1.19730 1.23469 1.16577 0.83123 0.87917 1.25263 0.96562 0.96709 0.99369 1.69621 1.30703 1.27983 1.25826 0.85815 0.78579 0.79091 0.80948 1.19251 1.20705 1.20768 0.91020 0.93210 0.93496 0.91720 0.91382 0.90405 0.90702 0.76230 0.81470 0.81833 0.87034 0.91740 0.91204 0.83630 0.89210 0.93528 0.77501 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.71 37.16 0.36 -1.21 16 2 C -0.11 -1.18 5.28 -26.73 -0.14 -1.32 16 3 C 0.08 0.83 2.73 -67.72 -0.18 0.65 16 4 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 5 C 0.08 0.90 4.47 -4.04 -0.02 0.88 16 6 N -0.72 -8.71 5.31 -61.78 -0.33 -9.04 16 7 C 0.61 8.63 7.77 -13.10 -0.10 8.53 16 8 O -0.52 -8.68 16.87 5.13 0.09 -8.60 16 9 C -0.10 -1.38 7.15 -36.57 -0.26 -1.64 16 10 C -0.08 -0.92 10.66 -39.11 -0.42 -1.34 16 11 C -0.24 -2.62 10.89 -39.73 -0.43 -3.05 16 12 C 0.22 2.55 7.86 29.96 0.24 2.79 16 13 O -0.26 -2.70 10.55 -41.03 -0.43 -3.13 16 14 C 0.02 0.13 10.74 101.05 1.09 1.21 16 15 O -0.19 -2.33 9.88 -19.28 -0.19 -2.52 16 16 N -0.65 -9.46 5.38 -107.99 -0.58 -10.04 16 17 C 0.04 0.73 5.32 -4.98 -0.03 0.70 16 18 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 19 O -0.58 -15.45 15.83 5.54 0.09 -15.37 16 20 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 34 H 0.08 1.01 6.69 -51.93 -0.35 0.66 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.40 4.47 6.98 -40.82 -0.28 4.18 16 37 H 0.17 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.34 5.09 7.24 -39.29 -0.28 4.81 16 43 H 0.09 1.44 6.30 -51.92 -0.33 1.11 16 44 H 0.05 0.78 6.41 -51.93 -0.33 0.44 16 45 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -33.23 391.04 -6.43 -39.65 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -6.37 Total: 16.97 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.23 Total: 8.39 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.24 Total: -57.34 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.45 Total: -29.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.23 -6.43 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.129 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds