Wall clock time and date at job start Tue Mar 31 2020 22:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.09007 * 109.47094 * 302.96465 * 3 2 1 5 5 C 1.53008 * 109.46689 * 182.97100 * 3 2 1 6 6 N 1.46503 * 109.46679 * 185.00086 * 5 3 2 7 7 C 1.34780 * 119.99776 * 179.97438 * 6 5 3 8 8 O 1.21770 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.46122 * 120.00097 * 179.97438 * 7 6 5 10 10 C 1.37828 * 126.03523 * 179.97438 * 9 7 6 11 11 C 1.39904 * 106.67986 * 179.97438 * 10 9 7 12 12 C 1.36093 * 107.17905 * 0.02562 * 11 10 9 13 13 O 1.35368 * 125.58065 * 180.02562 * 12 11 10 14 14 C 1.42896 * 117.00229 * 179.97438 * 13 12 11 15 15 O 1.34012 * 108.84008 * 359.76563 * 12 11 10 16 16 N 1.46890 * 109.47450 * 62.96949 * 3 2 1 17 17 C 1.46900 * 111.00363 * 65.52026 * 16 3 2 18 18 C 1.50698 * 109.47600 * 182.18844 * 17 16 3 19 19 O 1.21296 * 119.99458 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00298 * 180.02562 * 18 17 16 21 21 C 1.37089 * 119.99985 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00530 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00140 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99809 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00448 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46858 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46925 * 120.00291 * 25 23 21 28 28 H 1.48490 * 109.47244 * 240.00467 * 25 23 21 29 29 H 1.09005 * 109.46931 * 294.77718 * 1 2 3 30 30 H 1.08999 * 109.47166 * 54.77202 * 1 2 3 31 31 H 1.08994 * 109.47328 * 174.78020 * 1 2 3 32 32 H 1.08998 * 109.46912 * 240.00002 * 2 1 3 33 33 H 1.08997 * 109.46883 * 120.00164 * 2 1 3 34 34 H 1.08999 * 109.46573 * 304.99557 * 5 3 2 35 35 H 1.09001 * 109.47301 * 64.99914 * 5 3 2 36 36 H 0.96996 * 120.00016 * 359.97438 * 6 5 3 37 37 H 1.08004 * 126.66018 * 359.96797 * 10 9 7 38 38 H 1.07997 * 126.40924 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.47370 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47059 * 300.00420 * 14 13 12 41 41 H 1.09003 * 109.46724 * 59.99851 * 14 13 12 42 42 H 1.00908 * 111.00187 * 189.47504 * 16 3 2 43 43 H 1.09011 * 109.46801 * 302.18360 * 17 16 3 44 44 H 1.08994 * 109.47060 * 62.18272 * 17 16 3 45 45 H 0.96996 * 119.99635 * 359.97438 * 20 18 17 46 46 H 0.96998 * 119.99929 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8623 5 6 3.5682 1.4431 -0.0748 6 7 4.0624 2.8170 0.0454 7 6 5.3871 3.0624 0.0068 8 8 6.1731 2.1422 -0.1283 9 6 5.8801 4.4328 0.1261 10 6 7.2015 4.8240 0.1034 11 6 7.2108 6.2156 0.2476 12 6 5.9148 6.6176 0.3520 13 8 5.4965 7.8959 0.5045 14 6 4.0867 8.1109 0.5945 15 8 5.1202 5.5413 0.2734 16 7 1.6098 2.1140 1.2336 17 6 2.2441 1.5077 2.4117 18 6 1.7389 2.1858 3.6591 19 8 0.9303 3.0860 3.5749 20 7 2.1863 1.7927 4.8682 21 6 1.7270 2.4099 6.0029 22 1 1.0071 3.2114 5.9280 23 6 2.1878 2.0043 7.2494 24 7 3.0642 1.0294 7.3406 25 14 1.5626 2.8458 8.7956 26 1 0.5898 3.9045 8.4240 27 1 0.8963 1.8460 9.6683 28 1 2.7043 3.4555 9.5235 29 1 -0.3633 0.4307 0.9331 30 1 -0.3633 0.5928 -0.8394 31 1 -0.3634 -1.0233 -0.0935 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9719 0.8393 0.7380 35 1 3.8854 1.0250 -1.0301 36 1 3.4363 3.5500 0.1527 37 1 8.0626 4.1811 -0.0045 38 1 8.0832 6.8517 0.2715 39 1 3.8885 9.1760 0.7139 40 1 3.6056 7.7519 -0.3153 41 1 3.6907 7.5687 1.4532 42 1 1.7984 3.1044 1.1909 43 1 1.9989 0.4462 2.4505 44 1 3.3252 1.6286 2.3449 45 1 2.8331 1.0730 4.9355 46 1 3.3862 0.7465 8.2107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715083742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:47 Heat of formation + Delta-G solvation = -118.036355 kcal Electronic energy + Delta-G solvation = -29796.185560 eV Core-core repulsion = 25494.157334 eV Total energy + Delta-G solvation = -4302.028226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.86920 -41.02722 -40.17825 -39.54801 -38.61980 -35.98721 -35.25061 -34.27172 -33.36330 -33.00691 -31.10324 -29.63698 -28.39883 -27.73856 -26.09355 -24.82433 -23.33321 -23.01504 -21.83967 -21.38810 -20.62372 -20.03541 -19.85892 -18.94021 -18.34380 -18.18030 -17.23957 -17.07830 -16.70302 -16.37395 -16.33215 -15.94601 -15.90085 -15.63127 -15.40613 -15.12260 -14.65494 -14.39797 -14.34017 -14.16826 -14.02650 -13.99309 -13.77002 -13.49107 -13.13501 -13.07491 -12.89523 -12.69950 -12.56247 -12.41519 -12.32169 -12.12727 -11.83266 -11.56287 -11.50777 -11.47361 -11.15725 -10.39141 -10.33903 -10.02859 -9.40007 -9.21393 -8.47863 -5.96853 -0.12372 1.06497 1.24936 1.35170 1.40280 1.54482 1.87426 2.01765 2.03398 2.19214 2.27712 2.90656 3.19207 3.48283 3.62813 3.68747 3.74427 4.01554 4.16895 4.18057 4.21753 4.28043 4.28902 4.37007 4.44452 4.49066 4.56439 4.64016 4.65932 4.67758 4.79971 4.92634 4.97310 5.14190 5.20253 5.22010 5.36297 5.38787 5.39615 5.58737 5.85152 5.98572 6.05748 6.23811 6.33858 6.57714 6.87697 7.11054 7.54383 8.08929 8.69858 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007334 B = 0.003594 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3817.029817 B = 7789.292792 C = 9981.070167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.085 3.915 4 H 0.112 0.888 5 C 0.082 3.918 6 N -0.713 5.713 7 C 0.608 3.392 8 O -0.554 6.554 9 C -0.132 4.132 10 C -0.075 4.075 11 C -0.243 4.243 12 C 0.213 3.787 13 O -0.266 6.266 14 C 0.011 3.989 15 O -0.194 6.194 16 N -0.659 5.659 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.619 6.619 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.407 0.593 37 H 0.180 0.820 38 H 0.189 0.811 39 H 0.140 0.860 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.342 0.658 43 H 0.104 0.896 44 H 0.054 0.946 45 H 0.394 0.606 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 6.574 -18.706 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.130 0.870 5 C -0.042 4.042 6 N -0.364 5.364 7 C 0.396 3.604 8 O -0.435 6.435 9 C -0.182 4.182 10 C -0.095 4.095 11 C -0.262 4.262 12 C 0.116 3.884 13 O -0.180 6.180 14 C -0.083 4.083 15 O -0.094 6.094 16 N -0.291 5.291 17 C -0.069 4.069 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.243 0.757 37 H 0.197 0.803 38 H 0.206 0.794 39 H 0.158 0.842 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.227 0.773 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.912 6.214 -18.607 20.004 hybrid contribution 0.557 0.659 1.154 1.441 sum 4.469 6.873 -17.454 19.283 Atomic orbital electron populations 1.21568 0.94994 1.01214 1.01766 1.21536 0.96880 0.93665 1.02958 1.22087 0.89840 0.97815 0.92743 0.87039 1.22306 0.96714 0.81921 1.03305 1.45827 1.06381 1.10879 1.73285 1.16424 0.82766 0.84808 0.76381 1.90877 1.56556 1.43565 1.52487 1.21813 0.90725 0.84843 1.20844 1.22281 0.95923 0.95009 0.96315 1.21116 0.94795 0.94966 1.15352 1.21192 0.89013 0.79715 0.98525 1.86413 1.28605 1.15259 1.87677 1.23481 0.75863 1.06040 1.02919 1.83929 1.38114 1.14896 1.72487 1.60213 1.61013 1.07449 1.00417 1.21547 0.96709 1.00083 0.88579 1.20829 0.84850 0.86248 0.85421 1.90483 1.38185 1.34539 1.87283 1.41953 1.40196 1.34006 1.04996 1.19699 1.24405 1.17246 0.84805 0.90177 1.26052 0.96393 0.97093 1.01776 1.69687 1.31099 1.28593 1.26869 0.84876 0.78178 0.78131 0.77194 1.19607 1.19581 1.19715 0.94220 0.92133 0.92431 0.88998 0.92368 0.91852 0.89248 0.75653 0.80278 0.79418 0.84219 0.90856 0.92366 0.83878 0.87779 0.92801 0.77279 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.71 71.98 0.70 -2.13 16 2 C -0.11 -2.09 5.28 30.59 0.16 -1.93 16 3 C 0.09 1.70 2.73 44.92 0.12 1.82 16 4 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 5 C 0.08 1.76 4.47 86.38 0.39 2.15 16 6 N -0.71 -16.77 5.31 -467.56 -2.48 -19.25 16 7 C 0.61 17.10 7.77 86.29 0.67 17.77 16 8 O -0.55 -18.44 16.87 -4.57 -0.08 -18.52 16 9 C -0.13 -3.45 7.15 24.22 0.17 -3.28 16 10 C -0.07 -1.70 10.66 22.58 0.24 -1.46 16 11 C -0.24 -4.91 10.89 22.17 0.24 -4.67 16 12 C 0.21 4.77 7.86 67.32 0.53 5.30 16 13 O -0.27 -5.16 10.55 -64.38 -0.68 -5.84 16 14 C 0.01 0.15 10.74 113.37 1.22 1.36 16 15 O -0.19 -4.76 9.88 13.43 0.13 -4.62 16 16 N -0.66 -18.64 5.38 -495.58 -2.66 -21.30 16 17 C 0.06 2.14 5.32 85.56 0.46 2.60 16 18 C 0.44 20.77 7.82 87.66 0.69 21.46 16 19 O -0.62 -33.49 15.83 -3.08 -0.05 -33.54 16 20 N -0.57 -29.82 5.29 -306.99 -1.62 -31.45 16 21 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 25 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 H 0.04 1.07 7.85 -2.38 -0.02 1.05 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.22 6.36 -2.39 -0.02 1.20 16 34 H 0.06 1.58 6.69 -2.39 -0.02 1.56 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.41 8.79 6.98 -92.71 -0.65 8.14 16 37 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.34 9.96 7.24 -89.69 -0.65 9.31 16 43 H 0.10 3.27 6.30 -2.38 -0.01 3.26 16 44 H 0.05 1.78 6.41 -2.39 -0.02 1.76 16 45 H 0.39 19.78 7.90 -92.71 -0.73 19.04 16 46 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -72.55 391.04 0.75 -71.80 By element: Atomic # 1 Polarization: 48.12 SS G_CDS: -0.98 Total: 47.14 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.86 Total: 20.58 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -6.49 Total: -122.20 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -0.67 Total: -62.52 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -72.55 0.75 -71.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715083742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.235 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds