Wall clock time and date at job start Tue Mar 31 2020 22:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47283 * 2 1 4 4 N 1.46497 * 109.47217 * 239.99605 * 2 1 3 5 5 C 1.39988 * 119.99649 * 85.00063 * 4 2 1 6 6 C 1.40433 * 125.97860 * 0.02876 * 5 4 2 7 7 C 1.35246 * 107.86364 * 179.73534 * 6 5 4 8 8 N 1.34954 * 107.86319 * 0.42248 * 7 6 5 9 9 C 1.46502 * 125.97320 * 179.83727 * 8 7 6 10 10 C 1.50706 * 109.46990 * 124.71642 * 9 8 7 11 11 H 1.07997 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99896 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00056 * 179.72182 * 12 10 9 14 14 Si 1.86803 * 119.99907 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47092 * 269.72321 * 14 12 10 16 16 H 1.48498 * 109.47239 * 29.72959 * 14 12 10 17 17 H 1.48503 * 109.46702 * 149.72941 * 14 12 10 18 18 N 1.31220 * 125.97456 * 180.02562 * 5 4 2 19 19 C 1.50699 * 109.46931 * 120.00104 * 2 1 3 20 20 N 1.30741 * 126.36742 * 73.05872 * 19 2 1 21 21 N 1.28417 * 110.64814 * 180.02562 * 20 19 2 22 22 N 1.28944 * 110.20774 * 0.02562 * 21 20 19 23 23 N 1.35071 * 126.36402 * 252.74929 * 19 2 1 24 24 C 1.40271 * 127.38534 * 359.97438 * 23 19 2 25 25 C 1.38818 * 120.06051 * 42.14574 * 24 23 19 26 26 C 1.38126 * 119.93174 * 179.76575 * 25 24 23 27 27 C 1.38278 * 120.06426 * 0.51155 * 26 25 24 28 28 C 1.38277 * 120.12832 * 359.73300 * 27 26 25 29 29 C 1.38122 * 120.06797 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46886 * 60.00145 * 1 2 3 31 31 H 1.09009 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47532 * 299.99957 * 1 2 3 33 33 H 0.96997 * 120.00940 * 265.00088 * 4 2 1 34 34 H 1.08001 * 126.06604 * 359.97438 * 6 5 4 35 35 H 1.08003 * 126.06507 * 180.25921 * 7 6 5 36 36 H 1.08999 * 109.47179 * 4.71965 * 9 8 7 37 37 H 1.08993 * 109.47566 * 244.71268 * 9 8 7 38 38 H 0.97001 * 120.00683 * 180.26929 * 13 12 10 39 39 H 1.07998 * 120.03779 * 359.97438 * 25 24 23 40 40 H 1.07998 * 119.96872 * 180.24488 * 26 25 24 41 41 H 1.08001 * 119.93565 * 179.76984 * 27 26 25 42 42 H 1.07997 * 119.96837 * 180.02562 * 28 27 26 43 43 H 1.07993 * 120.03504 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1520 0.0077 -2.4020 6 6 1.8566 1.3653 -2.6062 7 6 2.1234 1.6579 -3.8994 8 7 2.5618 0.5301 -4.4971 9 6 2.9598 0.3990 -5.9009 10 6 4.3599 -0.1534 -5.9766 11 1 4.8994 -0.3834 -5.0697 12 6 4.9524 -0.3642 -7.2036 13 7 6.1762 -0.8411 -7.2696 14 14 4.0194 0.0343 -8.7721 15 1 3.2631 -1.1640 -9.2162 16 1 3.0735 1.1498 -8.5156 17 1 4.9803 0.4337 -9.8316 18 7 2.5754 -0.4918 -3.5391 19 6 2.0323 -0.7104 1.2305 20 7 2.0014 -1.9992 1.4484 21 7 2.5085 -2.2768 2.5951 22 7 2.8945 -1.1969 3.1846 23 7 2.6033 -0.1346 2.3106 24 6 2.8495 1.2307 2.5177 25 6 1.8910 2.1712 2.1659 26 6 2.1342 3.5147 2.3755 27 6 3.3352 3.9237 2.9253 28 6 4.2938 2.9894 3.2720 29 6 4.0543 1.6443 3.0694 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2491 -1.6318 -1.1526 34 1 1.4861 2.0544 -1.8617 35 1 2.0041 2.6223 -4.3708 36 1 2.9289 1.3775 -6.3803 37 1 2.2743 -0.2774 -6.4113 38 1 6.5946 -0.9858 -8.1327 39 1 0.9547 1.8527 1.7319 40 1 1.3873 4.2466 2.1056 41 1 3.5247 4.9750 3.0848 42 1 5.2308 3.3117 3.7016 43 1 4.8032 0.9150 3.3408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:58 Heat of formation + Delta-G solvation = 244.026468 kcal Electronic energy + Delta-G solvation = -28139.730077 eV Core-core repulsion = 24225.296495 eV Total energy + Delta-G solvation = -3914.433582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.50981 -40.41603 -39.87294 -37.08020 -35.35755 -33.66896 -32.57190 -31.61692 -31.32726 -30.48742 -30.11253 -28.96839 -26.97944 -25.42632 -24.57531 -23.35225 -22.60203 -22.29075 -21.45700 -20.21180 -19.58669 -18.82808 -17.15046 -17.00879 -16.91673 -16.66776 -16.31071 -15.51730 -15.08536 -14.90086 -14.54902 -14.52236 -14.12675 -14.08739 -13.86356 -13.53641 -13.31125 -13.09835 -12.82141 -12.56235 -12.45310 -12.28514 -12.25168 -12.05438 -12.00844 -11.77151 -11.38120 -11.16853 -11.10070 -10.84929 -10.57764 -10.33257 -9.88435 -9.78090 -9.61498 -9.42647 -9.28985 -8.75221 -8.09542 -7.24095 -6.21734 -4.23928 0.07867 0.71662 1.00140 1.38794 1.97437 2.73251 2.93639 3.08346 3.16791 3.21067 3.25394 3.39715 3.60198 3.88461 4.06747 4.23681 4.24125 4.33486 4.51470 4.55847 4.73490 4.74898 4.86062 4.96364 5.05808 5.07083 5.07980 5.23109 5.33989 5.38715 5.50853 5.68184 5.70819 5.74268 5.86744 5.90823 5.96995 6.06767 6.28811 6.34128 6.38654 6.58051 6.85431 7.29532 7.43818 7.82036 7.98486 8.15511 8.35992 8.69041 8.89382 9.33176 10.91072 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002630 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.098265 B =10642.641325 C =11202.768980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.253 3.747 3 H 0.104 0.896 4 N -0.715 5.715 5 C 0.308 3.692 6 C -0.331 4.331 7 C 0.070 3.930 8 N -0.324 5.324 9 C 0.233 3.767 10 C -0.533 4.533 11 H 0.085 0.915 12 C 0.075 3.925 13 N -0.888 5.888 14 Si 0.874 3.126 15 H -0.272 1.272 16 H -0.265 1.265 17 H -0.281 1.281 18 N -0.316 5.316 19 C 0.252 3.748 20 N -0.315 5.315 21 N -0.033 5.033 22 N -0.077 5.077 23 N -0.325 5.325 24 C 0.121 3.879 25 C -0.114 4.114 26 C -0.098 4.098 27 C -0.103 4.103 28 C -0.101 4.101 29 C -0.092 4.092 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 13.083 20.659 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.141 3.859 3 H 0.122 0.878 4 N -0.360 5.360 5 C 0.052 3.948 6 C -0.365 4.365 7 C -0.081 4.081 8 N -0.103 5.103 9 C 0.114 3.886 10 C -0.571 4.571 11 H 0.103 0.897 12 C -0.128 4.128 13 N -0.525 5.525 14 Si 0.701 3.299 15 H -0.197 1.197 16 H -0.190 1.190 17 H -0.207 1.207 18 N -0.147 5.147 19 C -0.026 4.026 20 N -0.165 5.165 21 N -0.027 5.027 22 N -0.061 5.061 23 N -0.116 5.116 24 C 0.030 3.970 25 C -0.134 4.134 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.112 4.112 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.150 0.850 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.197 10.858 20.576 25.402 hybrid contribution -0.430 1.308 -0.716 1.552 sum -10.627 12.166 19.860 25.600 Atomic orbital electron populations 1.22399 0.92749 1.04449 1.03127 1.19137 0.94539 0.94736 0.77448 0.87826 1.43113 1.76850 1.12166 1.03844 1.19032 0.98049 0.90738 0.86966 1.20718 1.23171 0.95231 0.97333 1.22332 0.99247 0.92981 0.93551 1.48607 1.46957 1.04875 1.09837 1.20004 0.97742 0.98444 0.72411 1.21117 0.96614 1.43992 0.95415 0.89672 1.24843 0.94878 0.94398 0.98698 1.69874 1.13131 1.43938 1.25595 0.86891 0.80088 0.79404 0.83544 1.19703 1.18996 1.20656 1.77570 1.28326 1.12632 0.96176 1.26070 0.94162 0.90475 0.91922 1.74461 1.20677 1.10805 1.10565 1.78069 1.06562 1.17742 1.00349 1.82688 1.20885 0.88844 1.13688 1.48916 1.42012 1.07497 1.13218 1.17533 0.96385 0.77768 1.05324 1.21199 0.98407 0.93008 1.00822 1.21100 0.97827 0.94553 0.98155 1.21432 0.93327 1.00434 0.96943 1.21159 1.00027 0.91670 0.99104 1.21097 0.94791 0.97260 0.98073 0.89425 0.90556 0.91924 0.75312 0.84981 0.81748 0.93129 0.94549 0.92208 0.84561 0.84168 0.84700 0.84401 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.30 37.16 0.35 -1.16 16 2 C 0.25 2.87 2.18 -69.08 -0.15 2.72 16 3 H 0.10 1.06 5.29 -51.93 -0.27 0.79 16 4 N -0.72 -10.84 5.28 -54.70 -0.29 -11.12 16 5 C 0.31 5.61 8.14 -154.55 -1.26 4.35 16 6 C -0.33 -5.20 9.92 -39.82 -0.40 -5.60 16 7 C 0.07 1.20 11.43 -17.24 -0.20 1.01 16 8 N -0.32 -7.03 3.67 -62.56 -0.23 -7.26 16 9 C 0.23 5.43 5.33 -5.19 -0.03 5.40 16 10 C -0.53 -15.05 9.79 -34.44 -0.34 -15.38 16 11 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 12 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 14 Si 0.87 20.08 27.47 -169.99 -4.67 15.41 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 N -0.32 -7.13 12.42 31.41 0.39 -6.74 16 19 C 0.25 3.21 6.74 -155.19 -1.05 2.16 16 20 N -0.32 -4.68 11.92 32.75 0.39 -4.29 16 21 N -0.03 -0.50 13.39 60.35 0.81 0.31 16 22 N -0.08 -1.08 13.83 60.35 0.83 -0.25 16 23 N -0.33 -3.95 3.74 -7.96 -0.03 -3.98 16 24 C 0.12 1.17 6.18 -83.56 -0.52 0.65 16 25 C -0.11 -0.82 8.21 -39.41 -0.32 -1.14 16 26 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 27 C -0.10 -0.52 10.04 -39.55 -0.40 -0.92 16 28 C -0.10 -0.62 10.04 -39.61 -0.40 -1.01 16 29 C -0.09 -0.79 9.89 -39.41 -0.39 -1.18 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.06 0.41 7.03 -51.93 -0.36 0.05 16 33 H 0.41 6.61 8.53 -40.82 -0.35 6.26 16 34 H 0.13 1.57 7.45 -52.49 -0.39 1.18 16 35 H 0.17 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.05 1.07 7.12 -51.93 -0.37 0.70 16 37 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 39 H 0.14 0.80 5.74 -52.49 -0.30 0.49 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 43 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -34.77 370.80 -7.01 -41.79 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -4.99 Total: 5.51 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -5.59 Total: -8.98 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 2.65 Total: -59.32 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.77 -7.01 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.813 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 251.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 244.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds