Wall clock time and date at job start Tue Mar 31 2020 23:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46495 * 109.47356 * 2 1 4 4 C 1.34782 * 119.99621 * 99.38048 * 3 2 1 5 5 O 1.21555 * 119.99838 * 187.06808 * 4 3 2 6 6 C 1.47835 * 120.00209 * 7.06836 * 4 3 2 7 7 C 1.40021 * 120.56306 * 150.42710 * 6 4 3 8 8 C 1.38350 * 118.29220 * 180.29041 * 7 6 4 9 9 C 1.38351 * 119.30244 * 359.72185 * 8 7 6 10 10 C 1.50703 * 119.46403 * 180.02562 * 9 8 7 11 11 F 1.39896 * 109.47553 * 210.02371 * 10 9 8 12 12 F 1.39901 * 109.46846 * 330.03129 * 10 9 8 13 13 N 1.31931 * 121.07940 * 0.03131 * 9 8 7 14 14 C 1.31692 * 121.88000 * 359.97114 * 13 9 8 15 15 C 1.46497 * 120.00244 * 279.38279 * 3 2 1 16 16 H 1.09000 * 110.64066 * 25.06391 * 15 3 2 17 17 C 1.55153 * 110.72108 * 261.72604 * 15 3 2 18 18 C 1.54912 * 101.58216 * 277.13766 * 17 15 3 19 19 N 1.47421 * 104.83339 * 322.99160 * 18 17 15 20 20 C 1.36937 * 125.64998 * 204.16839 * 19 18 17 21 21 H 1.08001 * 120.00115 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99859 * 359.94911 * 20 19 18 23 23 N 1.31613 * 119.99659 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99967 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47236 * 60.00168 * 24 22 20 26 26 H 1.48500 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47246 * 300.00349 * 24 22 20 28 28 C 1.47026 * 108.70017 * 24.12588 * 19 18 17 29 29 H 1.08996 * 109.46803 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46683 * 299.99952 * 1 2 3 31 31 H 1.08995 * 109.46926 * 59.99658 * 1 2 3 32 32 H 1.08999 * 109.46683 * 240.00048 * 2 1 3 33 33 H 1.08995 * 109.46926 * 120.00342 * 2 1 3 34 34 H 1.08007 * 120.85148 * 359.97438 * 7 6 4 35 35 H 1.08005 * 120.35280 * 179.75505 * 8 7 6 36 36 H 1.09009 * 109.46774 * 90.02196 * 10 9 8 37 37 H 1.08000 * 119.71584 * 180.02562 * 14 13 9 38 38 H 1.09003 * 111.00595 * 35.20885 * 17 15 3 39 39 H 1.08994 * 111.00719 * 159.06175 * 17 15 3 40 40 H 1.08994 * 110.36650 * 204.14986 * 18 17 15 41 41 H 1.09001 * 110.45898 * 81.87571 * 18 17 15 42 42 H 0.97010 * 119.99778 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.88049 * 239.52501 * 28 19 18 44 44 H 1.09002 * 109.88210 * 118.36537 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.4225 1.9530 1.1517 5 8 2.7055 3.1349 1.1768 6 6 2.5214 1.1429 2.3844 7 6 3.4563 1.4658 3.3755 8 6 3.5126 0.6722 4.5073 9 6 2.6478 -0.4012 4.6254 10 6 2.7056 -1.2677 5.8570 11 9 2.3224 -2.5723 5.5279 12 9 4.0113 -1.2778 6.3592 13 7 1.7734 -0.6788 3.6772 14 6 1.6814 0.0464 2.5819 15 6 2.0677 2.1407 -1.2517 16 1 1.3409 1.7528 -1.9654 17 6 3.4983 2.1179 -1.8518 18 6 4.1872 3.2551 -1.0570 19 7 3.1457 4.2854 -0.8928 20 6 3.3693 5.6205 -0.6859 21 1 2.5347 6.2974 -0.5779 22 6 4.6686 6.1037 -0.6145 23 7 5.6856 5.2787 -0.7462 24 14 4.9737 7.9247 -0.3316 25 1 4.3675 8.3332 0.9611 26 1 6.4358 8.1821 -0.2965 27 1 4.3602 8.7067 -1.4350 28 6 1.8270 3.6422 -0.9890 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 4.1199 2.3097 3.2570 35 1 4.2238 0.8887 5.2908 36 1 2.0286 -0.8700 6.6132 37 1 0.9524 -0.2122 1.8282 38 1 3.9850 1.1605 -1.6653 39 1 3.4783 2.3430 -2.9181 40 1 5.0305 3.6546 -1.6202 41 1 4.5192 2.8929 -0.0840 42 1 6.5937 5.6163 -0.6959 43 1 1.2619 4.0769 -1.8135 44 1 1.2820 3.7724 -0.0540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033849178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:46 Heat of formation + Delta-G solvation = -6.514030 kcal Electronic energy + Delta-G solvation = -30626.340119 eV Core-core repulsion = 26218.060348 eV Total energy + Delta-G solvation = -4408.279771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.26987 -47.27458 -41.11862 -39.49203 -36.46100 -35.87567 -32.92114 -32.66944 -31.80379 -30.34492 -28.94391 -27.84172 -26.73845 -24.47237 -24.20251 -23.37020 -22.82552 -21.07394 -19.96440 -18.93978 -18.18792 -17.82489 -17.69444 -17.18228 -16.66788 -16.56591 -15.61819 -15.45214 -15.19371 -14.48666 -14.30132 -14.10682 -14.03183 -13.79989 -13.63408 -13.59424 -13.34603 -13.28246 -12.99199 -12.60053 -12.59047 -12.17931 -12.03324 -11.78404 -11.58637 -11.47409 -11.16832 -10.85798 -10.76635 -10.73827 -10.30132 -10.03952 -10.02750 -9.94717 -9.74737 -9.43817 -9.29806 -8.95553 -8.47549 -8.17550 -6.56348 -5.46053 -2.81951 0.36630 0.95889 2.89426 3.04095 3.17764 3.49934 3.53686 3.55166 3.60886 3.76572 4.02706 4.43607 4.48802 4.54440 4.65038 4.69842 4.79057 4.92267 5.00025 5.01819 5.23846 5.29899 5.38703 5.52222 5.56435 5.61301 5.65894 5.74940 5.77217 5.88980 5.98510 6.04418 6.21214 6.28918 6.48944 6.58599 6.66381 6.84709 7.19007 7.44055 7.64959 7.71833 7.78980 8.00780 8.54367 8.59812 9.42197 10.04147 10.70858 11.58674 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.003511 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.478199 B = 7973.610203 C = 9423.076435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 N -0.600 5.600 4 C 0.533 3.467 5 O -0.443 6.443 6 C -0.151 4.151 7 C -0.019 4.019 8 C -0.144 4.144 9 C 0.053 3.947 10 C 0.329 3.671 11 F -0.187 7.187 12 F -0.194 7.194 13 N -0.460 5.460 14 C 0.095 3.905 15 C 0.135 3.865 16 H 0.084 0.916 17 C -0.161 4.161 18 C 0.162 3.838 19 N -0.578 5.578 20 C -0.197 4.197 21 H 0.071 0.929 22 C -0.017 4.017 23 N -0.926 5.926 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.288 1.288 28 C 0.140 3.860 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.196 0.804 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.011 0.989 42 H 0.247 0.753 43 H 0.018 0.982 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 -16.267 7.967 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.051 4.051 3 N -0.336 5.336 4 C 0.317 3.683 5 O -0.313 6.313 6 C -0.157 4.157 7 C -0.045 4.045 8 C -0.164 4.164 9 C -0.086 4.086 10 C 0.274 3.726 11 F -0.168 7.168 12 F -0.175 7.175 13 N -0.169 5.169 14 C -0.062 4.062 15 C 0.032 3.968 16 H 0.102 0.898 17 C -0.201 4.201 18 C 0.037 3.963 19 N -0.303 5.303 20 C -0.326 4.326 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.577 5.577 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.215 1.215 28 C 0.014 3.986 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.212 0.788 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.106 -16.168 8.126 20.257 hybrid contribution 0.814 1.386 0.152 1.615 sum -8.292 -14.781 8.278 18.862 Atomic orbital electron populations 1.22312 0.95765 1.02572 1.03194 1.22325 0.94461 0.83914 1.04385 1.47684 1.65080 1.13205 1.07614 1.18066 0.79773 0.87809 0.82641 1.91210 1.43375 1.13172 1.83508 1.21478 0.98965 0.97722 0.97510 1.21826 0.94977 0.97356 0.90373 1.21832 0.99661 0.95298 0.99572 1.21781 0.95037 0.95826 0.95925 1.20076 0.80591 0.79336 0.92586 1.93030 1.90882 1.39007 1.93885 1.93024 1.39886 1.96512 1.88119 1.67366 1.19486 1.29177 1.00845 1.24256 0.98147 0.89782 0.94049 1.22144 0.98015 0.93121 0.83543 0.89814 1.23488 0.95622 1.00679 1.00325 1.21818 0.92871 0.85503 0.96128 1.44139 0.98914 1.03424 1.83787 1.18946 0.91867 0.82079 1.39727 0.91104 1.24658 0.95484 0.97531 1.03423 1.69792 0.97554 1.32045 1.58275 0.86217 0.76636 0.85164 0.77892 1.21590 1.21828 1.21490 1.21412 0.90879 0.88561 0.97765 0.91063 0.91979 0.91252 0.90301 0.88371 0.82626 0.83281 0.85290 0.78794 0.92508 0.91315 0.88232 0.97152 0.94197 0.96445 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.16 37.16 0.34 -1.18 16 2 C 0.07 0.76 5.59 -4.04 -0.02 0.73 16 3 N -0.60 -9.05 2.54 -165.14 -0.42 -9.47 16 4 C 0.53 9.45 6.44 -12.33 -0.08 9.37 16 5 O -0.44 -10.19 10.76 5.32 0.06 -10.14 16 6 C -0.15 -2.22 5.61 -104.82 -0.59 -2.81 16 7 C -0.02 -0.27 9.73 -38.87 -0.38 -0.64 16 8 C -0.14 -1.64 9.42 -39.50 -0.37 -2.01 16 9 C 0.05 0.60 6.58 -82.51 -0.54 0.06 16 10 C 0.33 3.00 5.72 36.01 0.21 3.21 16 11 F -0.19 -2.08 17.05 2.25 0.04 -2.04 16 12 F -0.19 -1.91 16.45 2.25 0.04 -1.88 16 13 N -0.46 -5.74 9.94 -9.44 -0.09 -5.83 16 14 C 0.09 1.17 8.70 -17.13 -0.15 1.02 16 15 C 0.13 2.28 3.63 -66.10 -0.24 2.04 16 16 H 0.08 1.15 7.94 -51.93 -0.41 0.74 16 17 C -0.16 -3.05 6.76 -24.58 -0.17 -3.21 16 18 C 0.16 4.04 5.03 -2.53 -0.01 4.03 16 19 N -0.58 -15.22 2.17 -170.07 -0.37 -15.59 16 20 C -0.20 -5.73 10.27 -15.06 -0.15 -5.89 16 21 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.02 -0.49 5.49 -17.43 -0.10 -0.59 16 23 N -0.93 -27.96 10.09 55.49 0.56 -27.40 16 24 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.14 3.03 5.92 -3.06 -0.02 3.01 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 7.19 -51.93 -0.37 0.19 16 31 H 0.07 0.60 8.01 -51.93 -0.42 0.19 16 32 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.10 1.00 3.88 -52.63 -0.20 0.80 16 34 H 0.16 2.34 7.98 -52.48 -0.42 1.92 16 35 H 0.15 1.34 7.59 -52.48 -0.40 0.95 16 36 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.20 1.99 2.73 -52.49 -0.14 1.85 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 2.83 5.87 -51.93 -0.30 2.52 16 41 H 0.01 0.29 6.55 -51.93 -0.34 -0.05 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.81 6.27 -51.93 -0.33 0.48 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -34.86 352.92 -7.59 -42.44 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.42 Total: -0.60 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.27 Total: 7.15 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.32 Total: -58.29 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.06 Total: -10.14 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.86 -7.59 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033849178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.930 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds