Wall clock time and date at job start Tue Mar 31 2020 23:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47329 * 2 1 4 4 C 1.50710 * 109.46672 * 240.00313 * 2 1 3 5 5 O 1.21281 * 119.99731 * 257.13789 * 4 2 1 6 6 N 1.34779 * 119.99653 * 77.14071 * 4 2 1 7 7 C 1.46494 * 119.99669 * 184.60169 * 6 4 2 8 8 C 1.46504 * 120.00092 * 4.60273 * 6 4 2 9 9 H 1.08995 * 110.64016 * 359.55220 * 8 6 4 10 10 C 1.54323 * 110.71856 * 122.88881 * 8 6 4 11 11 N 1.47015 * 107.27087 * 140.55420 * 10 8 6 12 12 C 1.36943 * 125.64744 * 181.09292 * 11 10 8 13 13 H 1.08001 * 119.99721 * 185.53355 * 12 11 10 14 14 C 1.38813 * 119.99918 * 5.53783 * 12 11 10 15 15 N 1.31619 * 120.00260 * 6.56397 * 14 12 11 16 16 Si 1.86795 * 120.00033 * 186.56287 * 14 12 11 17 17 H 1.48497 * 109.47381 * 94.98972 * 16 14 12 18 18 H 1.48500 * 109.47618 * 214.99212 * 16 14 12 19 19 H 1.48510 * 109.47268 * 334.98910 * 16 14 12 20 20 C 1.47418 * 108.70383 * 1.06101 * 11 10 8 21 21 C 1.54911 * 104.83096 * 335.86932 * 20 11 10 22 22 H 1.08999 * 111.00097 * 278.93334 * 21 20 11 23 23 O 1.42905 * 111.00314 * 155.08650 * 21 20 11 24 24 N 1.46497 * 109.47144 * 120.00865 * 2 1 3 25 25 C 1.33877 * 122.76367 * 59.70262 * 24 2 1 26 26 O 1.21222 * 125.39723 * 359.97438 * 25 24 2 27 27 C 1.51320 * 109.20515 * 179.84368 * 25 24 2 28 28 C 1.54229 * 103.55520 * 0.38757 * 27 25 24 29 29 C 1.33883 * 122.76021 * 239.99545 * 24 2 1 30 30 O 1.21226 * 125.39589 * 0.02562 * 29 24 2 31 31 H 1.08997 * 109.46400 * 295.65029 * 1 2 3 32 32 H 1.09001 * 109.46666 * 55.64724 * 1 2 3 33 33 H 1.09000 * 109.47248 * 175.65444 * 1 2 3 34 34 H 1.09006 * 109.47071 * 84.62089 * 7 6 4 35 35 H 1.08999 * 109.47330 * 204.61730 * 7 6 4 36 36 H 1.08997 * 109.47526 * 324.61816 * 7 6 4 37 37 H 1.09002 * 109.88126 * 259.97512 * 10 8 6 38 38 H 1.09000 * 109.88224 * 21.13273 * 10 8 6 39 39 H 0.97000 * 120.00345 * 180.02562 * 15 14 12 40 40 H 1.09004 * 110.36521 * 217.03480 * 20 11 10 41 41 H 1.08993 * 110.37133 * 94.71016 * 20 11 10 42 42 H 0.96703 * 113.99922 * 67.80629 * 23 21 20 43 43 H 1.08997 * 110.79523 * 241.78125 * 27 25 24 44 44 H 1.09000 * 110.54754 * 118.87723 * 27 25 24 45 45 H 1.09000 * 110.60994 * 241.26329 * 28 27 25 46 46 H 1.09000 * 110.73856 * 118.35528 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.4549 -1.8441 -1.1463 6 7 2.0120 -0.0858 -2.4247 7 6 2.4050 -0.8091 -3.6365 8 6 1.5968 1.3166 -2.5109 9 1 1.3313 1.6999 -1.5257 10 6 2.7055 2.1756 -3.1547 11 7 2.0464 3.1468 -4.0401 12 6 2.6821 4.0803 -4.8146 13 1 2.1051 4.8091 -5.3643 14 6 4.0680 4.0896 -4.8930 15 7 4.7656 3.1261 -4.3297 16 14 4.9429 5.4695 -5.7982 17 1 5.3443 6.5208 -4.8293 18 1 6.1512 4.9310 -6.4730 19 1 4.0289 6.0540 -6.8123 20 6 0.5880 2.9487 -3.9567 21 6 0.4129 1.4787 -3.5004 22 1 0.5110 0.7939 -4.3428 23 8 -0.8389 1.2942 -2.8361 24 7 2.0184 -0.6908 1.1960 25 6 1.7245 -1.9688 1.4653 26 8 1.0386 -2.6920 0.7754 27 6 2.3867 -2.3685 2.7659 28 6 3.1138 -1.0833 3.2112 29 6 2.7907 -0.0942 2.1126 30 8 3.1705 1.0562 2.0695 31 1 -0.3632 0.4449 0.9264 32 1 -0.3633 0.5799 -0.8485 33 1 -0.3634 -1.0247 -0.0779 34 1 1.5493 -1.3632 -4.0226 35 1 2.7472 -0.0986 -4.3889 36 1 3.2108 -1.5038 -3.3997 37 1 3.2648 2.7002 -2.3800 38 1 3.3764 1.5414 -3.7341 39 1 5.7340 3.1328 -4.3842 40 1 0.1281 3.1001 -4.9333 41 1 0.1542 3.6279 -3.2228 42 1 -1.6084 1.3861 -3.4146 43 1 3.1002 -3.1766 2.6045 44 1 1.6382 -2.6606 3.5024 45 1 4.1890 -1.2520 3.2713 46 1 2.7275 -0.7332 4.1684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047400641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:29 Heat of formation + Delta-G solvation = -96.919672 kcal Electronic energy + Delta-G solvation = -31851.568257 eV Core-core repulsion = 27550.455719 eV Total energy + Delta-G solvation = -4301.112538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.08836 -39.82000 -38.53946 -37.98467 -35.81877 -35.41223 -34.60725 -34.31660 -31.85720 -30.55352 -28.69757 -27.29094 -26.87714 -26.25865 -24.63394 -24.01879 -22.44621 -21.03694 -20.63721 -20.06946 -18.54221 -17.72480 -17.25891 -17.07397 -16.95283 -16.45794 -16.00215 -15.54629 -15.10716 -14.75923 -14.55447 -14.26124 -14.20043 -14.04404 -13.97220 -13.86675 -13.31216 -13.21638 -13.11462 -12.97182 -12.56866 -12.27491 -12.06885 -11.95809 -11.86184 -11.64225 -11.54146 -11.47487 -11.13735 -10.88032 -10.84442 -10.51529 -10.38505 -10.21485 -10.13443 -9.93416 -9.83497 -9.68569 -9.26699 -8.77307 -8.28918 -7.00507 -5.82895 -3.21458 1.53899 2.29276 2.70126 2.79300 3.27553 3.34619 3.39695 3.41960 3.94296 4.09839 4.27237 4.27646 4.42448 4.49906 4.64791 4.93571 4.98272 5.11572 5.20877 5.23425 5.31562 5.37037 5.40823 5.42601 5.50155 5.54020 5.64206 5.71114 5.86582 5.87359 5.91130 6.04027 6.20859 6.25890 6.37407 6.57563 6.71729 6.82407 7.15994 7.32633 7.36980 7.60651 7.70325 7.78960 7.83438 8.09094 8.33819 9.04931 9.66213 10.28169 11.26477 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.003636 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.071581 B = 7699.226569 C = 8442.865265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 H 0.126 0.874 4 C 0.513 3.487 5 O -0.530 6.530 6 N -0.588 5.588 7 C 0.085 3.915 8 C 0.111 3.889 9 H 0.098 0.902 10 C 0.165 3.835 11 N -0.599 5.599 12 C -0.235 4.235 13 H 0.081 0.919 14 C -0.004 4.004 15 N -0.919 5.919 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.108 3.892 21 C 0.076 3.924 22 H 0.070 0.930 23 O -0.563 6.563 24 N -0.561 5.561 25 C 0.529 3.471 26 O -0.458 6.458 27 C -0.155 4.155 28 C -0.154 4.154 29 C 0.524 3.476 30 O -0.481 6.481 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.255 0.745 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.375 0.625 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 -9.274 12.374 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.003 3.997 3 H 0.143 0.857 4 C 0.299 3.701 5 O -0.406 6.406 6 N -0.320 5.320 7 C -0.057 4.057 8 C 0.007 3.993 9 H 0.116 0.884 10 C 0.039 3.961 11 N -0.327 5.327 12 C -0.362 4.362 13 H 0.099 0.901 14 C -0.201 4.201 15 N -0.566 5.566 16 Si 0.745 3.255 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.019 4.019 21 C 0.016 3.984 22 H 0.088 0.912 23 O -0.368 6.368 24 N -0.305 5.305 25 C 0.317 3.683 26 O -0.327 6.327 27 C -0.195 4.195 28 C -0.193 4.193 29 C 0.313 3.687 30 O -0.352 6.352 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.223 0.777 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.488 -9.707 12.424 17.454 hybrid contribution 0.253 0.992 -1.071 1.482 sum -7.234 -8.715 11.353 16.036 Atomic orbital electron populations 1.22223 0.90507 1.04880 1.04704 1.21309 0.97604 0.97883 0.82870 0.85653 1.20320 0.78638 0.86602 0.84521 1.90694 1.46348 1.18086 1.85473 1.47610 1.65455 1.11968 1.06956 1.21649 1.00062 0.97251 0.86753 1.22779 0.95217 0.80936 1.00409 0.88414 1.21597 0.90564 0.90528 0.93364 1.44226 0.98912 1.39504 1.50058 1.19054 0.89388 1.06440 1.21349 0.90098 1.24832 0.96243 0.98495 1.00491 1.69894 1.05884 1.32132 1.48651 0.86068 0.79245 0.81212 0.79019 1.21491 1.21663 1.20537 1.22202 0.87939 0.93026 0.98778 1.23473 0.83144 0.97334 0.94473 0.91208 1.86370 1.15625 1.94622 1.40225 1.46589 1.47263 1.14582 1.22074 1.20625 0.79941 0.80457 0.87243 1.90754 1.35273 1.54124 1.52527 1.22446 1.01926 0.99338 0.95803 1.22443 1.04518 0.93481 0.98895 1.20880 0.76267 0.88093 0.83482 1.90815 1.50987 1.16832 1.76568 0.91508 0.87601 0.90661 0.93203 0.89440 0.90984 0.94050 0.90272 0.93461 0.93579 0.95005 0.77738 0.86281 0.86454 0.86185 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.87 37.16 0.33 -1.97 16 2 C 0.11 1.72 2.25 -69.07 -0.16 1.56 16 3 H 0.13 2.06 5.86 -51.93 -0.30 1.75 16 4 C 0.51 9.44 6.78 -10.98 -0.07 9.37 16 5 O -0.53 -10.93 13.74 -15.84 -0.22 -11.15 16 6 N -0.59 -10.55 2.88 -171.84 -0.50 -11.05 16 7 C 0.08 1.45 9.00 59.84 0.54 1.98 16 8 C 0.11 2.02 2.41 -66.10 -0.16 1.87 16 9 H 0.10 1.73 4.97 -51.93 -0.26 1.47 16 10 C 0.16 3.78 4.95 -3.07 -0.02 3.77 16 11 N -0.60 -14.29 3.39 -170.08 -0.58 -14.87 16 12 C -0.23 -6.20 10.26 -15.06 -0.15 -6.35 16 13 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 14 C 0.00 -0.10 5.46 -17.43 -0.10 -0.19 16 15 N -0.92 -25.96 10.44 55.49 0.58 -25.38 16 16 Si 0.91 21.43 29.56 -169.99 -5.02 16.41 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 C 0.11 2.03 6.97 -2.53 -0.02 2.01 16 21 C 0.08 1.24 3.98 -24.59 -0.10 1.15 16 22 H 0.07 1.14 7.20 -51.93 -0.37 0.76 16 23 O -0.56 -7.60 11.28 -35.23 -0.40 -7.99 16 24 N -0.56 -7.92 2.39 -109.48 -0.26 -8.18 16 25 C 0.53 7.04 6.73 -11.08 -0.07 6.97 16 26 O -0.46 -7.72 14.64 -15.79 -0.23 -7.96 16 27 C -0.16 -1.15 7.03 -26.94 -0.19 -1.34 16 28 C -0.15 -1.09 7.03 -26.94 -0.19 -1.28 16 29 C 0.52 6.71 8.08 -11.08 -0.09 6.62 16 30 O -0.48 -7.87 17.23 5.60 0.10 -7.77 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 1.52 4.70 -51.93 -0.24 1.27 16 33 H 0.07 1.14 6.77 -51.93 -0.35 0.78 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.57 6.42 -51.93 -0.33 1.23 16 36 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 37 H 0.04 1.07 7.95 -51.93 -0.41 0.66 16 38 H 0.08 2.00 5.03 -51.93 -0.26 1.74 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.38 3.45 9.12 45.56 0.42 3.86 16 43 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -35.33 363.51 -6.94 -42.27 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.44 Total: 6.04 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: -0.44 Total: 24.15 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.76 Total: -59.48 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.75 Total: -34.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.33 -6.94 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047400641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.650 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds