Wall clock time and date at job start Tue Mar 31 2020 23:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35711 * 117.00047 * 2 1 4 4 C 1.41929 * 126.87943 * 180.32348 * 3 2 1 5 5 C 1.35277 * 103.95926 * 180.13430 * 4 3 2 6 6 C 1.50697 * 126.70708 * 179.87799 * 5 4 3 7 7 C 1.53006 * 109.47035 * 89.71584 * 6 5 4 8 8 C 1.50704 * 109.46686 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00343 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00183 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.45627 * 34.97418 * 11 10 8 13 13 C 1.53038 * 109.46028 * 275.00455 * 11 10 8 14 14 C 1.53194 * 109.33900 * 178.61059 * 13 11 10 15 15 N 1.47002 * 108.73930 * 54.62162 * 14 13 11 16 16 C 1.36935 * 120.61673 * 126.40837 * 15 14 13 17 17 H 1.07998 * 120.00178 * 207.95510 * 16 15 14 18 18 C 1.38810 * 119.99975 * 27.94991 * 16 15 14 19 19 N 1.31626 * 119.99689 * 17.51354 * 18 16 15 20 20 Si 1.86795 * 120.00408 * 197.51338 * 18 16 15 21 21 H 1.48499 * 109.47215 * 94.06658 * 20 18 16 22 22 H 1.48499 * 109.47389 * 214.07055 * 20 18 16 23 23 H 1.48505 * 109.46869 * 334.06996 * 20 18 16 24 24 C 1.46925 * 118.75259 * 306.41318 * 15 14 13 25 25 C 1.53044 * 109.44885 * 154.94218 * 11 10 8 26 26 H 1.08998 * 109.49802 * 301.36195 * 25 11 10 27 27 O 1.42901 * 109.49704 * 61.42679 * 25 11 10 28 28 O 1.34079 * 106.58162 * 359.61309 * 5 4 3 29 29 N 1.20924 * 111.71707 * 0.26582 * 28 5 4 30 30 H 1.08996 * 109.47174 * 300.00289 * 1 2 3 31 31 H 1.08998 * 109.47205 * 60.00706 * 1 2 3 32 32 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 33 33 H 1.07999 * 128.02423 * 0.03402 * 4 3 2 34 34 H 1.08992 * 109.47263 * 329.70976 * 6 5 4 35 35 H 1.09003 * 109.46746 * 209.71273 * 6 5 4 36 36 H 1.08994 * 109.47114 * 59.99785 * 7 6 5 37 37 H 1.08995 * 109.46811 * 299.99628 * 7 6 5 38 38 H 0.97004 * 120.00171 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.50055 * 298.57708 * 13 11 10 40 40 H 1.08997 * 109.50078 * 58.64200 * 13 11 10 41 41 H 1.09004 * 109.58863 * 174.43573 * 14 13 11 42 42 H 1.09000 * 109.58692 * 294.86678 * 14 13 11 43 43 H 0.96999 * 119.99958 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58551 * 293.81525 * 24 15 14 45 45 H 1.09001 * 109.70532 * 173.46308 * 24 15 14 46 46 H 0.96698 * 113.99808 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4527 -0.0064 5 6 3.5396 2.8020 -0.0004 6 6 4.8088 3.6145 -0.0007 7 6 5.2374 3.8903 -1.4434 8 6 6.5063 4.7033 -1.4437 9 8 7.0172 5.0305 -0.3935 10 7 7.0733 5.0670 -2.6110 11 6 8.3065 5.8578 -2.6114 12 1 8.9303 5.5580 -1.7693 13 6 7.9597 7.3431 -2.4857 14 6 9.2522 8.1647 -2.4514 15 7 10.0560 7.8302 -3.6359 16 6 10.5031 8.8147 -4.4761 17 1 10.6784 8.5961 -5.5191 18 6 10.7309 10.0938 -3.9873 19 7 10.8562 10.2905 -2.6918 20 14 10.8594 11.5357 -5.1677 21 1 9.5309 12.1855 -5.3019 22 1 11.8407 12.5190 -4.6430 23 1 11.3088 11.0488 -6.4967 24 6 10.3705 6.4197 -3.9012 25 6 9.0652 5.6182 -3.9188 26 1 9.2909 4.5566 -4.0191 27 8 8.2606 6.0411 -5.0215 28 8 2.2851 3.2751 0.0001 29 7 1.4700 2.3819 0.0003 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 4.2447 0.7287 -0.0128 34 1 5.5949 3.0607 0.5124 35 1 4.6352 4.5597 0.5137 36 1 4.4512 4.4441 -1.9564 37 1 5.4109 2.9451 -1.9578 38 1 6.6645 4.8057 -3.4510 39 1 7.3564 7.6495 -3.3403 40 1 7.3986 7.5091 -1.5661 41 1 9.0101 9.2274 -2.4615 42 1 9.8142 7.9243 -1.5489 43 1 11.0158 11.1842 -2.3502 44 1 11.0237 6.0372 -3.1169 45 1 10.8677 6.3294 -4.8670 46 1 8.6799 5.9186 -5.8841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099852834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:37 Heat of formation + Delta-G solvation = -36.714282 kcal Electronic energy + Delta-G solvation = -29184.191108 eV Core-core repulsion = 24885.689272 eV Total energy + Delta-G solvation = -4298.501836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.19357 -39.89701 -39.17977 -38.10447 -35.03394 -34.93266 -34.27920 -33.13763 -31.90257 -30.80876 -29.82190 -28.76111 -27.98169 -25.78252 -24.47000 -23.69168 -22.35759 -21.89973 -21.33865 -20.13979 -19.40703 -18.28254 -17.97623 -17.26715 -17.07498 -16.76384 -16.17265 -15.85310 -15.77043 -15.65531 -15.34080 -14.67710 -14.35781 -14.22832 -14.09954 -13.70643 -13.59790 -13.20096 -13.05643 -12.78981 -12.60351 -12.47294 -12.24507 -12.10476 -12.00614 -11.72734 -11.25421 -11.20102 -11.03925 -10.86578 -10.70841 -10.32537 -10.23165 -10.04312 -9.99230 -9.79771 -9.62231 -9.51662 -9.32297 -8.71359 -8.41687 -6.68540 -5.79456 -3.21893 1.08294 1.94342 2.40229 2.73024 2.76175 3.35681 3.39395 3.44932 3.46028 3.88563 4.43114 4.46903 4.55979 4.61500 4.65766 4.70175 4.72906 4.79573 4.96767 5.06774 5.11841 5.21983 5.29276 5.33820 5.40109 5.44908 5.58174 5.61992 5.73637 5.75544 5.94203 6.22410 6.36806 6.46919 6.56226 6.60771 6.62825 6.80909 6.90939 7.39117 7.65088 7.71020 7.78223 7.92251 8.06213 8.36148 8.43517 9.18780 9.81650 10.37852 11.28966 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.001856 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.071057 B =15082.516620 C =15277.059937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.235 4.235 5 C 0.005 3.995 6 C -0.027 4.027 7 C -0.139 4.139 8 C 0.510 3.490 9 O -0.542 6.542 10 N -0.718 5.718 11 C 0.161 3.839 12 H 0.091 0.909 13 C -0.143 4.143 14 C 0.174 3.826 15 N -0.581 5.581 16 C -0.250 4.250 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.118 3.882 25 C 0.081 3.919 26 H 0.045 0.955 27 O -0.555 6.555 28 O 0.101 5.899 29 N -0.411 5.411 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.179 0.821 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.020 0.980 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.061 0.939 46 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 -19.944 2.377 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.256 4.256 5 C -0.059 4.059 6 C -0.065 4.065 7 C -0.179 4.179 8 C 0.296 3.704 9 O -0.420 6.420 10 N -0.368 5.368 11 C 0.058 3.942 12 H 0.109 0.891 13 C -0.184 4.184 14 C 0.047 3.953 15 N -0.304 5.304 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.009 4.009 25 C 0.020 3.980 26 H 0.063 0.937 27 O -0.360 6.360 28 O 0.040 5.960 29 N -0.138 5.138 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.196 0.804 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -16.673 -19.274 3.697 25.751 hybrid contribution 0.625 0.006 -1.433 1.563 sum -16.048 -19.268 2.264 25.177 Atomic orbital electron populations 1.23064 0.76850 1.04063 1.02377 1.86189 1.22579 1.20985 1.89405 1.22038 0.90988 0.85704 1.00339 1.21818 0.94261 0.95738 1.13812 1.24409 0.88307 0.93238 0.99921 1.19964 0.88470 1.00683 0.97384 1.21659 0.96890 1.01730 0.97659 1.20395 0.85660 0.80162 0.84196 1.90734 1.64085 1.55998 1.31166 1.46205 1.27594 1.54759 1.08251 1.21030 0.84453 0.92392 0.96363 0.89123 1.22486 1.01458 0.93616 1.00809 1.20793 0.87059 0.99298 0.88106 1.43919 1.58431 0.99759 1.28259 1.19128 1.39267 0.89486 0.90117 0.91785 1.25040 0.99931 0.98913 0.95755 1.70042 1.51975 1.21104 1.11384 0.86266 0.77414 0.82633 0.80351 1.21484 1.21835 1.20464 1.21531 0.92599 0.87274 0.99543 1.22631 0.93110 0.95837 0.86418 0.93714 1.86441 1.45040 1.88144 1.16383 1.84823 1.12311 1.29963 1.68854 1.74150 1.15740 0.96705 1.27228 0.92265 0.92234 0.87667 0.80374 0.87207 0.87937 0.88238 0.88415 0.76451 0.91582 0.92984 0.89218 0.96215 0.93582 0.95552 0.92068 0.78113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.29 -2.78 10.57 -18.84 -0.20 -2.98 16 3 C 0.21 2.21 8.01 -16.66 -0.13 2.07 16 4 C -0.23 -2.07 11.11 -39.22 -0.44 -2.50 16 5 C 0.00 0.04 6.73 -35.36 -0.24 -0.19 16 6 C -0.03 -0.22 5.07 -27.88 -0.14 -0.36 16 7 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 8 C 0.51 6.50 7.79 -10.98 -0.09 6.41 16 9 O -0.54 -9.02 15.64 5.56 0.09 -8.94 16 10 N -0.72 -9.42 5.05 -53.76 -0.27 -9.69 16 11 C 0.16 2.69 2.20 -67.89 -0.15 2.54 16 12 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 13 C -0.14 -2.85 5.51 -26.61 -0.15 -3.00 16 14 C 0.17 4.16 5.31 -3.67 -0.02 4.14 16 15 N -0.58 -14.01 2.94 -172.26 -0.51 -14.52 16 16 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 17 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 18 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 19 N -0.90 -26.02 11.22 55.49 0.62 -25.40 16 20 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 2.28 6.16 -3.71 -0.02 2.26 16 25 C 0.08 1.28 3.38 -26.61 -0.09 1.19 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 O -0.56 -8.55 12.08 -35.23 -0.43 -8.97 16 28 O 0.10 1.09 11.19 17.07 0.19 1.28 16 29 N -0.41 -4.77 11.54 30.38 0.35 -4.42 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.40 4.44 8.25 -40.82 -0.34 4.10 16 39 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 46 H 0.37 4.51 9.08 45.56 0.41 4.93 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -33.54 383.56 -6.22 -39.76 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.06 Total: 5.88 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.77 Total: 5.72 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.20 Total: -54.03 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.35 Total: -19.61 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.54 -6.22 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099852834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.047 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds