Wall clock time and date at job start Tue Mar 31 2020 23:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35704 * 117.00524 * 2 1 4 4 C 1.41929 * 126.88264 * 180.02562 * 3 2 1 5 5 C 1.35269 * 103.96175 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.70755 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47267 * 90.00040 * 6 5 4 8 8 C 1.50703 * 109.46896 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00199 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99665 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99896 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.45847 * 325.02897 * 11 10 8 13 13 C 1.53037 * 109.46040 * 84.99826 * 11 10 8 14 14 C 1.53193 * 109.31514 * 58.65589 * 13 11 10 15 15 N 1.46933 * 108.77217 * 54.63494 * 14 13 11 16 16 C 1.36933 * 120.62656 * 126.36992 * 15 14 13 17 17 H 1.08009 * 119.99525 * 207.68336 * 16 15 14 18 18 C 1.38807 * 120.00408 * 27.69125 * 16 15 14 19 19 N 1.31613 * 120.00067 * 17.35706 * 18 16 15 20 20 Si 1.86807 * 120.00122 * 197.35699 * 18 16 15 21 21 H 1.48494 * 109.46699 * 59.99817 * 20 18 16 22 22 H 1.48500 * 109.47025 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46835 * 300.00059 * 20 18 16 24 24 C 1.46921 * 118.73901 * 306.39404 * 15 14 13 25 25 C 1.53035 * 109.46183 * 205.06986 * 11 10 8 26 26 H 1.09002 * 109.49650 * 181.39393 * 25 11 10 27 27 O 1.42895 * 109.49936 * 61.29340 * 25 11 10 28 28 O 1.34083 * 106.58142 * 0.25920 * 5 4 3 29 29 N 1.20914 * 111.71497 * 359.53112 * 28 5 4 30 30 H 1.08994 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46234 * 300.00189 * 1 2 3 32 32 H 1.08996 * 109.47226 * 59.99540 * 1 2 3 33 33 H 1.08009 * 128.01846 * 0.02562 * 4 3 2 34 34 H 1.08996 * 109.46773 * 329.99657 * 6 5 4 35 35 H 1.09000 * 109.46829 * 209.99962 * 6 5 4 36 36 H 1.08996 * 109.47536 * 60.00085 * 7 6 5 37 37 H 1.09000 * 109.47133 * 299.99737 * 7 6 5 38 38 H 0.96996 * 120.00097 * 0.27016 * 10 8 7 39 39 H 1.09004 * 109.50074 * 178.60857 * 13 11 10 40 40 H 1.09003 * 109.50385 * 298.70346 * 13 11 10 41 41 H 1.08994 * 109.58983 * 174.42006 * 14 13 11 42 42 H 1.08999 * 109.58688 * 294.84941 * 14 13 11 43 43 H 0.96996 * 120.00430 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.59103 * 173.39645 * 24 15 14 45 45 H 1.09002 * 109.58697 * 293.68183 * 24 15 14 46 46 H 0.96701 * 114.00308 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4435 1.4525 -0.0005 5 6 3.5398 2.8018 -0.0009 6 6 4.8091 3.6143 -0.0020 7 6 5.2375 3.8889 -1.4448 8 6 6.5072 4.7009 -1.4459 9 8 7.0186 5.0280 -0.3960 10 7 7.0742 5.0634 -2.6136 11 6 8.3081 5.8532 -2.6147 12 1 8.2968 6.5456 -1.7729 13 6 9.5125 4.9174 -2.4888 14 6 9.5061 3.9237 -3.6547 15 7 9.4550 4.6752 -4.9163 16 6 10.3841 4.4548 -5.8977 17 1 10.6392 5.2459 -6.5873 18 6 10.9979 3.2145 -6.0065 19 7 10.4678 2.1640 -5.4170 20 14 12.5763 3.0365 -6.9896 21 1 13.6264 3.9063 -6.4015 22 1 13.0267 1.6220 -6.9509 23 1 12.3306 3.4400 -8.3975 24 6 8.3884 5.6680 -5.1044 25 6 8.4073 6.6422 -3.9222 26 1 9.3372 7.2108 -3.9342 27 8 7.2985 7.5377 -4.0242 28 8 2.2853 3.2750 0.0052 29 7 1.4702 2.3819 -0.0001 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.2448 0.7284 -0.0014 34 1 5.5952 3.0607 0.5114 35 1 4.6357 4.5598 0.5118 36 1 4.4514 4.4425 -1.9582 37 1 5.4110 2.9434 -1.9586 38 1 6.6630 4.8051 -3.4532 39 1 10.4320 5.5023 -2.5144 40 1 9.4534 4.3728 -1.5464 41 1 10.4132 3.3201 -3.6255 42 1 8.6318 3.2771 -3.5789 43 1 10.8969 1.2974 -5.4927 44 1 8.5581 6.2154 -6.0316 45 1 7.4233 5.1635 -5.1493 46 1 7.2965 8.0710 -4.8308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099852835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:41 Heat of formation + Delta-G solvation = -37.203121 kcal Electronic energy + Delta-G solvation = -29645.295649 eV Core-core repulsion = 25346.772615 eV Total energy + Delta-G solvation = -4298.523034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.07494 -39.91713 -39.06783 -38.05425 -35.48397 -34.84977 -34.04019 -33.01729 -31.83513 -30.75366 -29.92160 -28.61371 -27.87511 -25.66335 -24.78102 -23.57617 -22.35653 -21.92416 -21.35073 -20.45150 -18.77683 -18.18251 -17.84672 -17.20630 -16.97980 -16.87984 -16.48401 -15.74810 -15.68519 -15.30299 -15.20774 -14.96086 -14.37529 -14.14106 -14.02299 -13.76887 -13.66867 -13.21674 -12.84059 -12.66384 -12.50880 -12.39746 -12.27594 -12.13693 -12.00256 -11.69242 -11.57638 -11.21350 -11.08536 -10.90921 -10.70669 -10.44435 -10.24443 -9.99043 -9.89348 -9.82243 -9.55210 -9.46922 -9.38669 -8.64765 -8.54579 -6.82027 -5.90857 -3.34848 1.20478 2.06860 2.51755 2.88030 2.89963 3.31454 3.38242 3.38783 3.52303 4.00411 4.33061 4.48322 4.57630 4.70379 4.74808 4.81288 4.82429 4.93326 5.10457 5.17131 5.24089 5.26496 5.30321 5.40970 5.46510 5.54979 5.60636 5.66805 5.75913 5.87294 5.93241 6.02990 6.22876 6.41187 6.50725 6.61247 6.65332 6.72574 6.90904 7.23322 7.54363 7.67667 7.83225 7.88283 8.03595 8.31776 8.50081 9.07520 9.69816 10.24840 11.17273 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.002408 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.312709 B =11623.315147 C =12850.253604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.284 6.284 3 C 0.208 3.792 4 C -0.233 4.233 5 C 0.004 3.996 6 C -0.024 4.024 7 C -0.140 4.140 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.703 5.703 11 C 0.166 3.834 12 H 0.079 0.921 13 C -0.153 4.153 14 C 0.172 3.828 15 N -0.587 5.587 16 C -0.260 4.260 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.118 3.882 25 C 0.075 3.925 26 H 0.066 0.934 27 O -0.571 6.571 28 O 0.099 5.901 29 N -0.413 5.413 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.180 0.820 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.403 0.597 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.022 0.978 43 H 0.256 0.744 44 H 0.058 0.942 45 H 0.023 0.977 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 1.261 8.734 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.010 3.990 4 C -0.254 4.254 5 C -0.059 4.059 6 C -0.063 4.063 7 C -0.181 4.181 8 C 0.303 3.697 9 O -0.431 6.431 10 N -0.354 5.354 11 C 0.061 3.939 12 H 0.097 0.903 13 C -0.193 4.193 14 C 0.046 3.954 15 N -0.311 5.311 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.543 5.543 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.009 4.009 25 C 0.014 3.986 26 H 0.084 0.916 27 O -0.375 6.375 28 O 0.039 5.961 29 N -0.140 5.140 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.197 0.803 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.238 0.762 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.448 1.158 10.030 18.455 hybrid contribution 1.151 -0.608 -1.592 2.056 sum -14.297 0.550 8.438 16.610 Atomic orbital electron populations 1.23054 0.76947 1.04024 1.02295 1.86197 1.22498 1.20999 1.89381 1.22034 0.91005 0.85671 1.00275 1.21857 0.94293 0.95820 1.13459 1.24406 0.88241 0.93279 1.00008 1.19945 0.88449 1.00436 0.97433 1.21649 0.96757 1.02079 0.97567 1.20290 0.85464 0.79977 0.84001 1.90678 1.64860 1.56243 1.31309 1.45935 1.26448 1.54543 1.08473 1.20825 0.84336 0.92003 0.96710 0.90317 1.22589 0.96224 0.99423 1.01105 1.20798 1.01829 0.91115 0.81635 1.44002 1.29126 1.43407 1.14570 1.19107 1.14774 0.95082 1.09989 0.91640 1.25040 0.99962 0.94961 0.99330 1.70011 1.38509 0.98756 1.46999 0.86352 0.83625 0.76794 0.79871 1.20920 1.21564 1.20840 1.21534 0.92395 0.91709 0.95264 1.22749 0.88612 0.90568 0.96649 0.91619 1.86476 1.48665 1.56382 1.46009 1.84801 1.12335 1.29981 1.68998 1.74124 1.15761 0.96718 1.27425 0.87703 0.92345 0.92252 0.80265 0.87206 0.88177 0.88343 0.88077 0.76155 0.91530 0.91801 0.89241 0.96036 0.93415 0.92327 0.95967 0.77970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.74 101.05 1.08 1.33 16 2 O -0.28 -3.19 10.57 -18.82 -0.20 -3.39 16 3 C 0.21 2.52 8.01 -16.66 -0.13 2.38 16 4 C -0.23 -2.47 11.10 -39.23 -0.44 -2.90 16 5 C 0.00 0.04 6.73 -35.36 -0.24 -0.19 16 6 C -0.02 -0.23 5.07 -27.88 -0.14 -0.37 16 7 C -0.14 -1.46 5.68 -27.88 -0.16 -1.62 16 8 C 0.52 7.48 7.79 -10.98 -0.09 7.40 16 9 O -0.55 -9.59 15.64 5.56 0.09 -9.50 16 10 N -0.70 -10.74 4.15 -53.77 -0.22 -10.96 16 11 C 0.17 2.80 2.47 -67.89 -0.17 2.63 16 12 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.15 -2.85 5.77 -26.61 -0.15 -3.00 16 14 C 0.17 3.80 5.05 -3.71 -0.02 3.78 16 15 N -0.59 -13.40 2.99 -172.32 -0.52 -13.92 16 16 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 17 H 0.07 1.64 7.89 -52.48 -0.41 1.23 16 18 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 19 N -0.90 -24.78 11.19 55.49 0.62 -24.16 16 20 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.12 2.18 5.84 -3.71 -0.02 2.16 16 25 C 0.08 1.21 3.36 -26.61 -0.09 1.12 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 O -0.57 -8.06 13.21 -35.23 -0.47 -8.52 16 28 O 0.10 1.18 11.19 17.06 0.19 1.37 16 29 N -0.41 -5.25 11.54 30.38 0.35 -4.90 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.11 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 5.90 6.87 -40.82 -0.28 5.62 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 2.28 6.03 -51.93 -0.31 1.96 16 42 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 45 H 0.02 0.41 6.65 -51.93 -0.35 0.07 16 46 H 0.37 3.74 9.08 45.56 0.41 4.16 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -31.80 380.97 -6.16 -37.96 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.93 Total: 8.59 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.79 Total: 5.98 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.23 Total: -53.93 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.39 Total: -20.05 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.80 -6.16 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099852835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.752 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds