Wall clock time and date at job start Tue Mar 31 2020 23:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35702 * 116.99710 * 2 1 4 4 C 1.41939 * 126.87853 * 180.02562 * 3 2 1 5 5 C 1.35263 * 103.96275 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.71016 * 179.74088 * 5 4 3 7 7 C 1.52995 * 109.47322 * 89.99674 * 6 5 4 8 8 C 1.50700 * 109.46949 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00265 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00068 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99893 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46158 * 324.97177 * 11 10 8 13 13 C 1.53041 * 109.46182 * 84.93281 * 11 10 8 14 14 C 1.53191 * 109.31327 * 181.38382 * 13 11 10 15 15 N 1.46926 * 108.77475 * 305.36290 * 14 13 11 16 16 C 1.36936 * 120.63216 * 233.62884 * 15 14 13 17 17 H 1.08000 * 119.99463 * 27.65928 * 16 15 14 18 18 C 1.38809 * 120.00370 * 207.66468 * 16 15 14 19 19 N 1.31622 * 119.99788 * 17.36524 * 18 16 15 20 20 Si 1.86803 * 119.99839 * 197.37500 * 18 16 15 21 21 H 1.48496 * 109.47265 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46945 * 119.99860 * 20 18 16 23 23 H 1.48497 * 109.46887 * 239.99365 * 20 18 16 24 24 C 1.46927 * 118.73852 * 53.60806 * 15 14 13 25 25 C 1.53039 * 109.45838 * 204.99729 * 11 10 8 26 26 H 1.09003 * 109.49958 * 298.56927 * 25 11 10 27 27 O 1.42901 * 109.49803 * 58.66240 * 25 11 10 28 28 O 1.34089 * 106.58278 * 359.97438 * 5 4 3 29 29 N 1.20915 * 111.71813 * 0.02562 * 28 5 4 30 30 H 1.09003 * 109.46729 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.47270 * 59.99943 * 1 2 3 32 32 H 1.09004 * 109.46752 * 180.02562 * 1 2 3 33 33 H 1.07999 * 128.01647 * 0.02562 * 4 3 2 34 34 H 1.09007 * 109.47082 * 209.99361 * 6 5 4 35 35 H 1.08996 * 109.46848 * 329.99114 * 6 5 4 36 36 H 1.08999 * 109.47040 * 299.99736 * 7 6 5 37 37 H 1.08996 * 109.47616 * 59.99911 * 7 6 5 38 38 H 0.96999 * 119.99674 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.49479 * 301.33176 * 13 11 10 40 40 H 1.08998 * 109.49678 * 61.42826 * 13 11 10 41 41 H 1.09001 * 109.58594 * 185.57176 * 14 13 11 42 42 H 1.09000 * 109.70293 * 65.22127 * 14 13 11 43 43 H 0.96998 * 119.99620 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58767 * 186.60358 * 24 15 14 45 45 H 1.09003 * 109.58470 * 66.17994 * 24 15 14 46 46 H 0.96701 * 114.00280 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4434 1.4527 -0.0005 5 6 3.5397 2.8019 0.0003 6 6 4.8088 3.6145 0.0057 7 6 5.2442 3.8899 -1.4349 8 6 6.5137 4.7019 -1.4294 9 8 7.0201 5.0286 -0.3769 10 7 7.0864 5.0651 -2.5942 11 6 8.3209 5.8540 -2.5888 12 1 8.3057 6.5464 -1.7472 13 6 9.5240 4.9175 -2.4566 14 6 10.8106 5.7480 -2.4165 15 7 10.8496 6.6169 -3.6007 16 6 11.9350 6.6102 -4.4356 17 1 12.5423 5.7215 -4.5245 18 6 12.2547 7.7454 -5.1675 19 7 11.7522 8.9126 -4.8247 20 14 13.3981 7.6166 -6.6392 21 1 13.8238 6.2046 -6.8131 22 1 12.6868 8.0736 -7.8600 23 1 14.5928 8.4693 -6.4139 24 6 9.7017 7.4928 -3.8723 25 6 8.4275 6.6427 -3.8960 26 1 8.4679 5.9500 -4.7366 27 8 7.2884 7.4945 -4.0335 28 8 2.2850 3.2751 0.0006 29 7 1.4700 2.3820 0.0006 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.2447 0.7286 -0.0014 34 1 4.6328 4.5599 0.5191 35 1 5.5925 3.0608 0.5226 36 1 5.4202 2.9446 -1.9483 37 1 4.4605 4.4436 -1.9518 38 1 6.6816 4.8035 -3.4360 39 1 9.4355 4.3392 -1.5368 40 1 9.5540 4.2410 -3.3107 41 1 11.6747 5.0836 -2.4221 42 1 10.8255 6.3592 -1.5142 43 1 11.9754 9.7059 -5.3364 44 1 9.8341 7.9797 -4.8385 45 1 9.6236 8.2465 -3.0887 46 1 7.2893 8.0252 -4.8418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099852836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:44 Heat of formation + Delta-G solvation = -40.061009 kcal Electronic energy + Delta-G solvation = -29086.102121 eV Core-core repulsion = 24787.455159 eV Total energy + Delta-G solvation = -4298.646961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.19335 -39.88353 -39.17843 -38.00665 -35.29987 -35.01671 -34.32480 -33.13689 -32.22855 -30.77996 -29.41654 -28.86907 -27.98432 -25.81502 -24.52271 -23.69202 -22.46362 -21.82189 -21.34033 -20.20065 -19.43952 -18.28647 -17.97487 -17.24623 -17.06446 -16.63756 -16.56762 -15.99811 -15.82256 -15.69858 -15.34226 -14.86961 -14.33370 -14.02765 -13.87303 -13.77012 -13.56544 -13.37870 -12.93869 -12.65462 -12.59933 -12.50266 -12.24396 -12.22874 -12.00387 -11.71443 -11.68572 -11.25052 -11.21584 -10.87647 -10.80190 -10.43795 -10.21999 -10.05575 -10.00346 -9.82059 -9.59579 -9.50947 -9.34770 -8.78758 -8.56274 -6.81183 -5.89885 -3.33276 1.08386 1.94525 2.40406 2.74766 2.76122 3.29690 3.37589 3.39053 3.40914 3.88581 4.38228 4.43099 4.55710 4.57049 4.62274 4.69885 4.72860 4.78932 4.97195 5.06845 5.13066 5.24720 5.28450 5.37546 5.43937 5.45590 5.56615 5.62309 5.74686 5.88169 5.97129 6.06601 6.20104 6.40496 6.44118 6.60998 6.67473 6.80789 6.88066 7.09272 7.42760 7.67383 7.70978 7.92227 8.06559 8.32878 8.36830 9.08522 9.71405 10.27346 11.18538 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.001815 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.270343 B =15419.424877 C =15515.479702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.234 4.234 5 C 0.005 3.995 6 C -0.026 4.026 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.544 6.544 10 N -0.714 5.714 11 C 0.162 3.838 12 H 0.088 0.912 13 C -0.138 4.138 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.148 3.852 25 C 0.072 3.928 26 H 0.051 0.949 27 O -0.573 6.573 28 O 0.100 5.900 29 N -0.412 5.412 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.179 0.821 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.030 0.970 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.958 -14.345 5.861 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.009 3.991 4 C -0.256 4.256 5 C -0.059 4.059 6 C -0.065 4.065 7 C -0.180 4.180 8 C 0.299 3.701 9 O -0.422 6.422 10 N -0.363 5.363 11 C 0.058 3.942 12 H 0.106 0.894 13 C -0.179 4.179 14 C 0.017 3.983 15 N -0.313 5.313 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.021 3.979 25 C 0.011 3.989 26 H 0.069 0.931 27 O -0.378 6.378 28 O 0.040 5.960 29 N -0.139 5.139 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.196 0.804 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.231 0.769 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.048 0.952 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.867 -14.102 7.115 25.382 hybrid contribution 0.896 -0.326 -1.815 2.050 sum -18.972 -14.428 5.300 24.417 Atomic orbital electron populations 1.23065 0.76853 1.04068 1.02362 1.86191 1.22575 1.20981 1.89391 1.22041 0.90990 0.85699 1.00322 1.21825 0.94271 0.95753 1.13735 1.24406 0.88292 0.93245 0.99960 1.19959 0.88451 1.00627 0.97416 1.21656 0.96860 1.01755 0.97683 1.20352 0.85418 0.80164 0.84175 1.90720 1.64782 1.55761 1.30943 1.46106 1.27123 1.54938 1.08155 1.20999 0.82664 0.92008 0.98556 0.89370 1.22407 0.95759 0.98449 1.01272 1.20942 0.94289 0.92771 0.90259 1.44015 1.16065 1.46373 1.24853 1.19248 1.05199 0.96100 1.17932 0.91304 1.25076 0.98936 0.94768 1.00859 1.70040 1.47467 0.97687 1.39365 0.86215 0.80241 0.77640 0.82641 1.20185 1.21528 1.21616 1.21420 0.82831 0.90978 1.02699 1.22976 0.88030 0.92440 0.95472 0.93074 1.86408 1.44591 1.59628 1.47145 1.84818 1.12314 1.29969 1.68890 1.74145 1.15739 0.96710 1.27265 0.92274 0.92236 0.87664 0.80352 0.87998 0.87201 0.88384 0.88244 0.76885 0.91786 0.92044 0.92131 0.95807 0.93519 0.88822 0.95229 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.29 -2.80 10.57 -18.81 -0.20 -2.99 16 3 C 0.21 2.21 8.01 -16.65 -0.13 2.08 16 4 C -0.23 -2.08 11.10 -39.23 -0.44 -2.51 16 5 C 0.00 0.04 6.73 -35.37 -0.24 -0.20 16 6 C -0.03 -0.21 5.07 -27.89 -0.14 -0.35 16 7 C -0.14 -1.16 5.68 -27.89 -0.16 -1.32 16 8 C 0.51 6.60 7.79 -10.98 -0.09 6.52 16 9 O -0.54 -9.05 15.65 5.55 0.09 -8.97 16 10 N -0.71 -9.50 4.92 -53.76 -0.26 -9.76 16 11 C 0.16 2.74 2.12 -67.89 -0.14 2.59 16 12 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 13 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 14 C 0.14 2.94 6.52 -3.71 -0.02 2.91 16 15 N -0.59 -14.02 2.99 -172.32 -0.52 -14.54 16 16 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 17 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -25.12 11.19 55.49 0.62 -24.50 16 20 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.15 3.31 4.94 -3.71 -0.02 3.30 16 25 C 0.07 1.27 3.14 -26.61 -0.08 1.19 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.57 -9.30 13.16 -35.23 -0.46 -9.77 16 28 O 0.10 1.08 11.19 17.05 0.19 1.27 16 29 N -0.41 -4.75 11.54 30.38 0.35 -4.40 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.10 0.89 8.10 -51.92 -0.42 0.47 16 35 H 0.11 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.09 2.31 6.03 -51.93 -0.31 1.99 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.38 4.89 9.08 45.56 0.41 5.30 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -32.68 385.19 -6.27 -38.95 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.10 Total: 7.00 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.76 Total: 6.14 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.19 Total: -53.19 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.38 Total: -20.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.68 -6.27 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099852836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.108 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds