Wall clock time and date at job start Tue Mar 31 2020 23:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35707 * 116.99391 * 2 1 4 4 C 1.41932 * 126.87472 * 180.02562 * 3 2 1 5 5 C 1.35271 * 103.96110 * 179.97438 * 4 3 2 6 6 C 1.50694 * 126.70761 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47367 * 90.00125 * 6 5 4 8 8 C 1.50703 * 109.47471 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99597 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00202 * 179.97438 * 8 7 6 11 11 C 1.46491 * 119.99918 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46511 * 35.00567 * 11 10 8 13 13 C 1.53035 * 109.46255 * 275.02784 * 11 10 8 14 14 C 1.53191 * 109.31648 * 178.61399 * 13 11 10 15 15 N 1.46932 * 108.77402 * 54.63868 * 14 13 11 16 16 C 1.36932 * 120.63552 * 126.41556 * 15 14 13 17 17 H 1.07998 * 120.00062 * 207.67755 * 16 15 14 18 18 C 1.38818 * 119.99951 * 27.66753 * 16 15 14 19 19 N 1.31619 * 119.99603 * 17.36122 * 18 16 15 20 20 Si 1.86801 * 120.00144 * 197.36014 * 18 16 15 21 21 H 1.48497 * 109.47037 * 89.99992 * 20 18 16 22 22 H 1.48498 * 109.46929 * 210.00595 * 20 18 16 23 23 H 1.48506 * 109.46990 * 330.00372 * 20 18 16 24 24 C 1.46927 * 118.73402 * 306.38897 * 15 14 13 25 25 C 1.53048 * 109.45911 * 154.97290 * 11 10 8 26 26 H 1.08996 * 109.49487 * 61.43312 * 25 11 10 27 27 O 1.42895 * 109.49582 * 301.33720 * 25 11 10 28 28 O 1.34086 * 106.57921 * 0.25922 * 5 4 3 29 29 N 1.20916 * 111.71757 * 359.52532 * 28 5 4 30 30 H 1.09009 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47416 * 299.99525 * 1 2 3 32 32 H 1.09001 * 109.47434 * 60.00224 * 1 2 3 33 33 H 1.08002 * 128.02241 * 359.97438 * 4 3 2 34 34 H 1.08993 * 109.47695 * 329.99851 * 6 5 4 35 35 H 1.09000 * 109.47212 * 209.99673 * 6 5 4 36 36 H 1.09000 * 109.47086 * 299.99758 * 7 6 5 37 37 H 1.09005 * 109.47271 * 59.99520 * 7 6 5 38 38 H 0.97002 * 119.99708 * 0.02562 * 10 8 7 39 39 H 1.08998 * 109.49979 * 298.56879 * 13 11 10 40 40 H 1.09002 * 109.49668 * 58.66561 * 13 11 10 41 41 H 1.08996 * 109.58847 * 174.41878 * 14 13 11 42 42 H 1.08997 * 109.59157 * 294.85326 * 14 13 11 43 43 H 0.96999 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.58612 * 173.39926 * 24 15 14 45 45 H 1.08999 * 109.59005 * 293.67889 * 24 15 14 46 46 H 0.96702 * 113.99455 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4432 1.4528 -0.0005 5 6 3.5395 2.8021 -0.0009 6 6 4.8086 3.6146 -0.0020 7 6 5.2371 3.8893 -1.4448 8 6 6.5059 4.7024 -1.4460 9 8 7.0174 5.0294 -0.3961 10 7 7.0728 5.0652 -2.6137 11 6 8.3065 5.8551 -2.6148 12 1 8.9308 5.5548 -1.7732 13 6 7.9610 7.3406 -2.4889 14 6 9.2545 8.1606 -2.4555 15 7 10.0572 7.8262 -3.6399 16 6 10.5051 8.8104 -4.4799 17 1 10.6841 8.5908 -5.5220 18 6 10.7289 10.0906 -3.9920 19 7 10.8467 10.2897 -2.6963 20 14 10.8628 11.5306 -5.1743 21 1 9.5166 12.1179 -5.3936 22 1 11.7648 12.5608 -4.5995 23 1 11.4135 11.0578 -6.4699 24 6 10.3706 6.4155 -3.9054 25 6 9.0644 5.6152 -3.9227 26 1 8.4505 5.9385 -4.7633 27 8 9.3597 4.2233 -4.0543 28 8 2.2849 3.2751 0.0052 29 7 1.4699 2.3819 -0.0002 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.2446 0.7287 -0.0006 34 1 5.5949 3.0612 0.5113 35 1 4.6352 4.5601 0.5117 36 1 5.4106 2.9438 -1.9586 37 1 4.4508 4.4428 -1.9582 38 1 6.6638 4.8032 -3.4534 39 1 7.3576 7.6475 -3.3432 40 1 7.4009 7.5071 -1.5687 41 1 9.0136 9.2236 -2.4657 42 1 9.8167 7.9199 -1.5532 43 1 11.0035 11.1842 -2.3554 44 1 10.8661 6.3270 -4.8722 45 1 11.0258 6.0331 -3.1227 46 1 9.8408 3.9981 -4.8624 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099852837.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:48 Heat of formation + Delta-G solvation = -39.299625 kcal Electronic energy + Delta-G solvation = -29077.495776 eV Core-core repulsion = 24778.881831 eV Total energy + Delta-G solvation = -4298.613945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.18318 -39.87686 -39.17048 -38.06621 -35.44293 -34.99977 -34.29719 -33.12532 -32.01732 -30.81991 -29.84756 -28.57321 -27.97113 -25.79762 -24.50640 -23.68068 -22.42655 -21.88029 -21.33286 -20.19819 -19.45701 -18.27450 -17.96474 -17.27575 -17.06088 -16.76952 -16.53240 -15.94156 -15.79785 -15.68892 -15.33408 -14.87155 -14.33474 -14.09688 -13.94896 -13.72860 -13.59263 -13.17869 -13.10314 -12.67247 -12.58116 -12.52220 -12.27986 -12.23595 -12.08902 -11.68502 -11.59847 -11.20415 -11.12828 -10.90493 -10.70195 -10.36015 -10.27389 -10.00885 -9.94632 -9.81119 -9.73407 -9.56291 -9.40006 -8.78326 -8.47748 -6.80181 -5.87141 -3.31371 1.09521 1.95590 2.41271 2.76621 2.77880 3.32649 3.38456 3.40118 3.41627 3.89614 4.33713 4.44278 4.50808 4.57509 4.63303 4.70760 4.73492 4.79840 4.99046 5.07769 5.13454 5.25987 5.28401 5.31565 5.45943 5.46885 5.52398 5.63299 5.74293 5.77013 5.94278 6.08835 6.29031 6.45426 6.50043 6.61822 6.63956 6.74434 6.83435 7.26685 7.58141 7.69092 7.70880 7.88056 7.93268 8.35200 8.38735 9.10851 9.73197 10.28863 11.21374 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.001875 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.433410 B =14931.502093 C =15380.571912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.234 4.234 5 C 0.005 3.995 6 C -0.027 4.027 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.542 6.542 10 N -0.715 5.715 11 C 0.162 3.838 12 H 0.088 0.912 13 C -0.146 4.146 14 C 0.170 3.830 15 N -0.588 5.588 16 C -0.260 4.260 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.899 5.899 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.121 3.879 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.572 6.572 28 O 0.100 5.900 29 N -0.412 5.412 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.179 0.821 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.397 0.603 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.256 0.744 44 H 0.059 0.941 45 H 0.029 0.971 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 -18.346 1.832 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.191 6.191 3 C 0.009 3.991 4 C -0.256 4.256 5 C -0.059 4.059 6 C -0.065 4.065 7 C -0.179 4.179 8 C 0.299 3.701 9 O -0.419 6.419 10 N -0.364 5.364 11 C 0.059 3.941 12 H 0.106 0.894 13 C -0.187 4.187 14 C 0.044 3.956 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.007 4.007 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.376 6.376 28 O 0.040 5.960 29 N -0.139 5.139 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.196 0.804 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.230 0.770 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.332 -17.858 3.246 25.097 hybrid contribution 0.535 0.193 -1.573 1.673 sum -16.797 -17.666 1.673 24.434 Atomic orbital electron populations 1.23064 0.76866 1.04059 1.02362 1.86191 1.22565 1.20985 1.89400 1.22037 0.90989 0.85698 1.00333 1.21828 0.94263 0.95765 1.13734 1.24409 0.88282 0.93250 0.99929 1.19961 0.88467 1.00666 0.97402 1.21654 0.96794 1.01800 0.97655 1.20339 0.85643 0.80018 0.84144 1.90731 1.64158 1.55864 1.31181 1.46089 1.27227 1.55011 1.08113 1.21012 0.84027 0.91358 0.97752 0.89390 1.22601 1.01608 0.93325 1.01150 1.20843 0.86969 0.99369 0.88400 1.44044 1.58891 0.99870 1.28379 1.19169 1.40220 0.89323 0.90260 0.91507 1.25072 0.99567 0.98953 0.95800 1.70035 1.51550 1.21230 1.11391 0.86263 0.77585 0.82399 0.80322 1.21340 1.21673 1.20410 1.21527 0.92868 0.86675 0.99648 1.22777 0.98085 0.80792 0.96458 0.92608 1.86472 1.79348 1.24969 1.46799 1.84818 1.12317 1.29969 1.68890 1.74142 1.15747 0.96707 1.27272 0.87673 0.92272 0.92243 0.80353 0.87192 0.87959 0.88344 0.88333 0.76990 0.92367 0.91864 0.88845 0.95785 0.93404 0.92212 0.95313 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.29 -2.82 10.57 -18.82 -0.20 -3.02 16 3 C 0.21 2.24 8.01 -16.66 -0.13 2.10 16 4 C -0.23 -2.12 11.10 -39.23 -0.44 -2.56 16 5 C 0.00 0.04 6.73 -35.37 -0.24 -0.19 16 6 C -0.03 -0.22 5.07 -27.89 -0.14 -0.37 16 7 C -0.14 -1.18 5.68 -27.88 -0.16 -1.34 16 8 C 0.51 6.74 7.79 -10.98 -0.09 6.66 16 9 O -0.54 -9.29 15.64 5.56 0.09 -9.20 16 10 N -0.72 -9.53 4.92 -53.77 -0.26 -9.79 16 11 C 0.16 2.75 2.12 -67.89 -0.14 2.61 16 12 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 13 C -0.15 -2.76 5.65 -26.61 -0.15 -2.91 16 14 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 15 N -0.59 -14.04 2.99 -172.31 -0.52 -14.56 16 16 C -0.26 -6.84 9.59 -15.06 -0.14 -6.98 16 17 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 18 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 19 N -0.90 -25.49 11.19 55.49 0.62 -24.87 16 20 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.12 2.37 6.14 -3.71 -0.02 2.35 16 25 C 0.08 1.29 3.14 -26.61 -0.08 1.20 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -8.01 13.16 -35.23 -0.46 -8.47 16 28 O 0.10 1.09 11.19 17.06 0.19 1.28 16 29 N -0.41 -4.80 11.54 30.38 0.35 -4.45 16 30 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 4.24 8.60 -40.82 -0.35 3.89 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.11 7.93 -51.92 -0.41 0.70 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.37 3.71 9.08 45.56 0.41 4.12 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -33.13 385.19 -6.27 -39.40 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.10 Total: 5.99 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.76 Total: 5.89 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.19 Total: -53.67 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.38 Total: -19.41 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.13 -6.27 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099852837.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.105 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds