Wall clock time and date at job start Tue Mar 31 2020 23:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 120.00212 * 2 1 4 4 H 1.48502 * 109.46925 * 265.75236 * 3 2 1 5 5 H 1.48493 * 109.46993 * 25.75137 * 3 2 1 6 6 H 1.48500 * 109.46944 * 145.75165 * 3 2 1 7 7 C 1.38810 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99880 * 335.15902 * 7 2 1 9 9 N 1.36943 * 120.00128 * 155.16422 * 7 2 1 10 10 C 1.46923 * 120.62884 * 334.36146 * 9 7 2 11 11 C 1.53188 * 108.77355 * 233.58609 * 10 9 7 12 12 C 1.53041 * 109.31318 * 305.36565 * 11 10 9 13 13 C 1.53036 * 109.53921 * 61.36677 * 12 11 10 14 14 H 1.09003 * 109.49516 * 58.61653 * 13 12 11 15 15 C 1.52996 * 109.49882 * 178.68209 * 13 12 11 16 16 N 1.46505 * 109.47080 * 184.99881 * 15 13 12 17 17 C 1.34774 * 119.99893 * 180.02562 * 16 15 13 18 18 O 1.21545 * 120.00020 * 0.02562 * 17 16 15 19 19 C 1.47956 * 119.99972 * 180.02562 * 17 16 15 20 20 N 1.32194 * 120.15467 * 354.38786 * 19 17 16 21 21 C 1.32030 * 122.67802 * 180.29914 * 20 19 17 22 22 C 1.36689 * 122.02725 * 359.72010 * 21 20 19 23 23 C 1.40530 * 118.84940 * 0.02562 * 22 21 20 24 24 C 1.40317 * 122.21841 * 179.97438 * 23 22 21 25 25 C 1.36205 * 119.44859 * 180.02562 * 24 23 22 26 26 C 1.39380 * 121.00660 * 0.02562 * 25 24 23 27 27 C 1.36262 * 121.08036 * 359.97438 * 26 25 24 28 28 C 1.40093 * 119.53654 * 359.97438 * 27 26 25 29 29 C 1.46931 * 120.62920 * 154.34054 * 9 7 2 30 30 H 0.96997 * 119.99362 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58448 * 113.79853 * 10 9 7 32 32 H 1.08997 * 109.58681 * 353.37373 * 10 9 7 33 33 H 1.08997 * 109.49833 * 185.41239 * 11 10 9 34 34 H 1.09002 * 109.52571 * 65.33325 * 11 10 9 35 35 H 1.08997 * 109.46263 * 301.34283 * 12 11 10 36 36 H 1.09004 * 109.44906 * 181.37800 * 12 11 10 37 37 H 1.08997 * 109.47433 * 65.00101 * 15 13 12 38 38 H 1.09000 * 109.47574 * 304.99879 * 15 13 12 39 39 H 0.97003 * 120.00142 * 0.02562 * 16 15 13 40 40 H 1.08003 * 118.98862 * 179.74242 * 21 20 19 41 41 H 1.08000 * 120.57434 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.27529 * 0.02562 * 24 23 22 43 43 H 1.08006 * 119.49696 * 180.02562 * 25 24 23 44 44 H 1.07992 * 119.46116 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.23069 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.58662 * 6.62332 * 29 9 7 47 47 H 1.08999 * 109.58063 * 246.19853 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.5876 1.9945 -1.3963 5 1 1.4058 2.6769 0.6083 6 1 3.5000 1.4677 0.7879 7 6 2.0102 -1.2021 -0.0005 8 1 1.5451 -2.0944 0.3920 9 7 3.2847 -1.2568 -0.4987 10 6 3.7367 -0.2878 -1.5063 11 6 4.3002 -1.0528 -2.7080 12 6 5.3888 -2.0161 -2.2296 13 6 4.7841 -3.0278 -1.2534 14 1 3.9800 -3.5737 -1.7471 15 6 5.8659 -4.0106 -0.8011 16 7 5.2625 -5.0488 0.0382 17 6 6.0304 -6.0287 0.5543 18 8 7.2236 -6.0509 0.3238 19 6 5.4210 -7.0776 1.4015 20 7 4.1472 -6.9963 1.7455 21 6 3.5545 -7.9002 2.5036 22 6 4.2205 -8.9930 2.9838 23 6 5.5780 -9.1564 2.6592 24 6 6.3295 -10.2506 3.1139 25 6 7.6422 -10.3527 2.7653 26 6 8.2497 -9.3869 1.9647 27 6 7.5495 -8.3117 1.5059 28 6 6.1968 -8.1735 1.8429 29 6 4.2261 -2.2853 -0.0353 30 1 -0.4849 0.8401 -0.0004 31 1 4.5137 0.3469 -1.0802 32 1 2.8949 0.3263 -1.8262 33 1 4.7265 -0.3472 -3.4211 34 1 3.5006 -1.6169 -3.1882 35 1 6.1765 -1.4539 -1.7281 36 1 5.8083 -2.5440 -3.0860 37 1 6.6253 -3.4771 -0.2294 38 1 6.3262 -4.4718 -1.6748 39 1 4.3103 -5.0308 0.2225 40 1 2.5111 -7.7724 2.7518 41 1 3.7123 -9.7183 3.6019 42 1 5.8708 -11.0056 3.7352 43 1 8.2213 -11.1949 3.1146 44 1 9.2921 -9.4929 1.7031 45 1 8.0341 -7.5713 0.8868 46 1 3.7072 -2.9890 0.6156 47 1 5.0429 -1.8135 0.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266075035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:44 Heat of formation + Delta-G solvation = 24.421788 kcal Electronic energy + Delta-G solvation = -28658.036203 eV Core-core repulsion = 24805.327440 eV Total energy + Delta-G solvation = -3852.708763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17241 -40.53407 -39.48290 -38.37605 -36.41777 -34.74977 -34.00956 -32.83869 -32.25368 -32.12130 -30.64408 -27.69775 -27.08727 -25.67594 -24.52322 -23.86082 -23.67002 -22.76556 -21.82989 -20.82935 -19.27417 -18.74978 -18.43973 -18.11903 -17.27100 -17.08497 -16.80682 -16.73306 -16.02622 -15.73072 -15.58186 -15.47879 -15.14240 -14.95028 -14.80036 -14.69132 -14.38854 -14.15877 -13.93113 -13.87277 -13.65771 -13.28397 -13.22284 -13.13759 -12.74483 -12.57737 -12.47781 -12.16492 -12.10227 -11.71967 -11.66303 -11.29851 -11.24432 -11.20876 -11.08136 -10.59525 -10.48422 -10.19323 -10.12428 -9.07679 -8.95511 -8.17293 -5.44063 -0.98392 -0.12945 0.69300 1.29122 1.40951 1.49710 1.59046 1.99349 2.20373 2.42083 3.01947 3.05209 3.09409 3.32726 3.59756 3.68515 3.80162 3.84387 3.90191 3.94999 4.01435 4.18841 4.26049 4.28239 4.38807 4.41404 4.48366 4.52357 4.64814 4.71793 4.77562 4.78075 4.82588 4.85212 5.00154 5.04335 5.08743 5.10572 5.17583 5.25875 5.29723 5.37624 5.40796 5.53442 5.57817 5.62927 5.86226 5.90943 6.12341 6.31172 6.73857 6.92156 7.04944 7.63792 8.03909 9.02450 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018185 B = 0.002543 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.335459 B =11009.754753 C =12154.030991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.033 4.033 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.311 1.311 6 H -0.273 1.273 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.115 3.885 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.105 4.105 14 H 0.070 0.930 15 C 0.134 3.866 16 N -0.700 5.700 17 C 0.569 3.431 18 O -0.554 6.554 19 C 0.089 3.911 20 N -0.471 5.471 21 C 0.050 3.950 22 C -0.107 4.107 23 C -0.054 4.054 24 C -0.110 4.110 25 C -0.098 4.098 26 C -0.112 4.112 27 C -0.126 4.126 28 C -0.087 4.087 29 C 0.152 3.848 30 H 0.261 0.739 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.413 0.587 40 H 0.183 0.817 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.050 0.950 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.376 -22.352 3.339 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.228 4.228 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.240 1.240 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.125 4.125 14 H 0.088 0.912 15 C 0.010 3.990 16 N -0.350 5.350 17 C 0.355 3.645 18 O -0.434 6.434 19 C -0.062 4.062 20 N -0.183 5.183 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.059 4.059 24 C -0.128 4.128 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.145 4.145 28 C -0.090 4.090 29 C 0.027 3.973 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.250 0.750 40 H 0.200 0.800 41 H 0.202 0.798 42 H 0.186 0.814 43 H 0.180 0.820 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.069 0.931 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 16.490 -21.560 2.918 27.300 hybrid contribution -0.429 0.648 0.581 0.970 sum 16.061 -20.913 3.499 26.600 Atomic orbital electron populations 1.70011 1.07348 1.27182 1.55216 1.25806 0.95722 1.00682 1.00564 0.86094 0.78214 0.80641 0.78290 1.19054 1.23954 1.19850 1.18861 0.88935 0.94054 1.35952 0.92923 1.44499 1.10365 1.34706 1.44728 1.21501 0.97224 0.92179 0.90078 1.21901 0.98523 0.99017 0.97122 1.21363 0.97219 0.96236 0.98650 1.21739 0.97242 0.95955 0.97550 0.91152 1.21461 0.95389 0.87639 0.94476 1.45999 1.13065 1.26011 1.49936 1.17980 0.85789 0.81291 0.79412 1.90554 1.15095 1.75932 1.61815 1.21250 0.90724 0.95083 0.99115 1.67222 1.10030 1.29621 1.11455 1.22720 1.01764 0.90540 0.94578 1.22611 0.93012 0.98755 0.98246 1.18590 0.95103 0.95412 0.96805 1.21382 0.94580 0.96677 1.00113 1.21490 0.95233 0.99160 0.95854 1.21465 1.01491 0.93383 0.96682 1.22068 0.92860 0.99715 0.99877 1.18910 0.95956 0.95029 0.99147 1.21078 0.91623 0.90246 0.94357 0.92991 0.95303 0.93175 0.89784 0.92798 0.91221 0.89517 0.91108 0.89956 0.74966 0.79965 0.79840 0.81436 0.81975 0.83333 0.82992 0.93109 0.95373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.22 13.97 21.65 0.30 -59.91 16 2 C -0.03 -1.93 5.15 84.86 0.44 -1.50 16 3 Si 0.94 47.01 24.61 68.60 1.69 48.70 16 4 H -0.26 -12.25 6.27 99.48 0.62 -11.62 16 5 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 6 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.25 -14.24 10.01 84.03 0.84 -13.40 16 8 H 0.05 3.28 8.05 -2.91 -0.02 3.26 16 9 N -0.62 -29.24 2.78 -699.11 -1.94 -31.18 16 10 C 0.11 4.84 4.23 86.36 0.37 5.21 16 11 C -0.13 -4.09 6.08 30.67 0.19 -3.90 16 12 C -0.10 -2.60 5.17 30.62 0.16 -2.44 16 13 C -0.10 -3.15 2.37 -10.72 -0.03 -3.17 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.13 3.57 5.07 86.38 0.44 4.01 16 16 N -0.70 -20.23 5.32 -465.86 -2.48 -22.71 16 17 C 0.57 17.40 7.78 86.82 0.68 18.07 16 18 O -0.55 -18.19 13.44 -3.86 -0.05 -18.24 16 19 C 0.09 2.55 6.81 42.43 0.29 2.84 16 20 N -0.47 -12.90 9.52 -184.94 -1.76 -14.66 16 21 C 0.05 1.02 11.06 84.30 0.93 1.96 16 22 C -0.11 -1.66 9.88 22.47 0.22 -1.44 16 23 C -0.05 -1.03 5.75 -21.29 -0.12 -1.15 16 24 C -0.11 -1.39 9.82 22.30 0.22 -1.17 16 25 C -0.10 -1.17 9.95 22.07 0.22 -0.95 16 26 C -0.11 -1.83 9.95 22.08 0.22 -1.61 16 27 C -0.13 -2.99 9.23 22.26 0.21 -2.78 16 28 C -0.09 -2.22 5.76 -21.14 -0.12 -2.34 16 29 C 0.15 5.86 5.60 86.36 0.48 6.34 16 30 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 32 H 0.05 2.36 4.40 -2.39 -0.01 2.35 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.41 12.29 7.07 -92.71 -0.66 11.64 16 40 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 43 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.15 4.14 4.97 -2.99 -0.01 4.13 16 46 H 0.05 2.03 7.14 -2.39 -0.02 2.02 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -75.07 372.59 1.64 -73.44 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.25 Total: 22.00 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.62 Total: 2.57 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.88 Total: -128.46 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.05 Total: -18.24 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.69 Total: 48.70 kcal Total: -75.07 1.64 -73.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266075035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.859 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds