Wall clock time and date at job start Tue Mar 31 2020 23:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00200 * 2 1 4 4 H 1.48507 * 109.47280 * 240.00061 * 3 2 1 5 5 H 1.48496 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47442 * 120.00228 * 3 2 1 7 7 C 1.38821 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99671 * 185.94094 * 7 2 1 9 9 N 1.36928 * 120.00065 * 5.93482 * 7 2 1 10 10 C 1.46922 * 120.63177 * 34.42217 * 9 7 2 11 11 C 1.53193 * 108.77650 * 126.38689 * 10 9 7 12 12 C 1.53038 * 109.31348 * 54.63456 * 11 10 9 13 13 C 1.53042 * 109.53812 * 298.63330 * 12 11 10 14 14 H 1.08994 * 109.50116 * 301.38233 * 13 12 11 15 15 C 1.53002 * 109.49698 * 181.31353 * 13 12 11 16 16 N 1.46502 * 109.47037 * 175.06712 * 15 13 12 17 17 C 1.34771 * 119.99882 * 180.02562 * 16 15 13 18 18 O 1.21535 * 120.00326 * 0.02562 * 17 16 15 19 19 C 1.47956 * 119.99673 * 179.97438 * 17 16 15 20 20 N 1.32198 * 120.15968 * 354.29890 * 19 17 16 21 21 C 1.32027 * 122.67978 * 180.27292 * 20 19 17 22 22 C 1.36683 * 122.03050 * 359.74554 * 21 20 19 23 23 C 1.40539 * 118.84800 * 359.97438 * 22 21 20 24 24 C 1.40317 * 122.22074 * 179.97438 * 23 22 21 25 25 C 1.36204 * 119.45438 * 180.02562 * 24 23 22 26 26 C 1.39387 * 120.99895 * 359.96248 * 25 24 23 27 27 C 1.36253 * 121.08249 * 0.04036 * 26 25 24 28 28 C 1.40094 * 119.54048 * 359.97438 * 27 26 25 29 29 C 1.46943 * 120.60468 * 214.39425 * 9 7 2 30 30 H 0.97001 * 119.99638 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58915 * 6.59744 * 10 9 7 32 32 H 1.09000 * 109.70224 * 246.23906 * 10 9 7 33 33 H 1.09000 * 109.50176 * 294.68477 * 11 10 9 34 34 H 1.09004 * 109.49836 * 174.58426 * 11 10 9 35 35 H 1.08999 * 109.46050 * 178.61543 * 12 11 10 36 36 H 1.08999 * 109.44923 * 58.65043 * 12 11 10 37 37 H 1.09001 * 109.46777 * 55.06834 * 15 13 12 38 38 H 1.08996 * 109.47271 * 295.06786 * 15 13 12 39 39 H 0.97004 * 120.00035 * 359.97438 * 16 15 13 40 40 H 1.08004 * 118.98665 * 179.72610 * 21 20 19 41 41 H 1.08001 * 120.57683 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.27256 * 0.04018 * 24 23 22 43 43 H 1.07998 * 119.50213 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.45575 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.23041 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.55850 * 113.81061 * 29 9 7 47 47 H 1.08997 * 109.61283 * 353.38567 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0859 -1.2049 0.0963 9 7 1.3310 -2.3848 -0.1237 10 6 0.1230 -2.4712 -0.9555 11 6 0.2967 -3.6146 -1.9601 12 6 0.6346 -4.9032 -1.2069 13 6 1.9515 -4.7224 -0.4484 14 1 2.7452 -4.4713 -1.1520 15 6 2.3051 -6.0218 0.2778 16 7 3.6216 -5.8873 0.9063 17 6 4.1427 -6.9149 1.6055 18 8 3.5207 -7.9534 1.7142 19 6 5.4725 -6.7792 2.2397 20 7 6.2009 -5.6962 2.0301 21 6 7.3954 -5.5256 2.5662 22 6 7.9629 -6.4615 3.3848 23 6 7.2504 -7.6405 3.6629 24 6 7.7656 -8.6479 4.4929 25 6 7.0266 -9.7684 4.7240 26 6 5.7668 -9.9287 4.1493 27 6 5.2364 -8.9706 3.3386 28 6 5.9675 -7.8044 3.0776 29 6 1.7973 -3.5915 0.5734 30 1 -0.4850 0.8401 -0.0004 31 1 -0.0198 -1.5326 -1.4911 32 1 -0.7441 -2.6676 -0.3249 33 1 1.1059 -3.3734 -2.6495 34 1 -0.6291 -3.7519 -2.5188 35 1 0.7346 -5.7236 -1.9175 36 1 -0.1634 -5.1303 -0.5000 37 1 2.3264 -6.8437 -0.4379 38 1 1.5563 -6.2257 1.0431 39 1 4.1186 -5.0589 0.8186 40 1 7.9410 -4.6187 2.3510 41 1 8.9416 -6.2975 3.8111 42 1 8.7400 -8.5355 4.9449 43 1 7.4225 -10.5444 5.3623 44 1 5.2020 -10.8271 4.3498 45 1 4.2588 -9.1088 2.9009 46 1 1.0684 -3.8800 1.3307 47 1 2.7590 -3.3923 1.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266075038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:49 Heat of formation + Delta-G solvation = 36.797257 kcal Electronic energy + Delta-G solvation = -28608.505725 eV Core-core repulsion = 24756.333602 eV Total energy + Delta-G solvation = -3852.172123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32289 -39.38480 -37.75013 -37.60645 -34.88651 -33.25536 -32.94786 -31.41751 -30.64578 -30.38376 -29.68143 -26.14516 -25.26426 -24.54513 -23.76230 -22.88746 -22.07838 -20.96657 -20.70341 -19.14467 -18.30734 -17.67210 -17.33009 -16.63556 -16.08435 -15.89830 -15.54165 -14.88664 -14.83782 -14.59958 -14.55576 -13.98139 -13.94573 -13.58288 -13.46026 -13.39272 -13.09405 -12.75355 -12.42631 -12.29646 -12.18335 -12.14090 -12.07039 -11.70485 -11.27474 -10.91035 -10.73298 -10.51715 -10.42047 -10.21771 -10.17248 -10.13880 -9.90195 -9.67310 -9.45783 -9.41126 -9.38823 -8.98495 -8.45539 -8.32445 -6.54798 -5.76838 -3.28561 -0.16930 0.62728 1.48641 2.50441 3.04598 3.07726 3.38581 3.43624 3.44430 3.88843 3.98313 4.29767 4.48064 4.49926 4.51950 4.61825 4.85466 4.93247 5.05730 5.12099 5.19080 5.33502 5.43916 5.44754 5.50670 5.55813 5.65796 5.76046 5.82899 5.84327 5.94383 6.02561 6.09118 6.20469 6.26211 6.32093 6.38384 6.40613 6.50780 6.63508 6.65428 6.74048 6.81751 6.89814 7.00494 7.38825 7.44942 7.68197 7.74650 7.80646 8.17338 8.51845 9.25269 9.85087 10.45208 11.30848 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.002629 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.941243 B =10647.447538 C =12150.812485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.143 4.143 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.124 3.876 16 N -0.696 5.696 17 C 0.571 3.429 18 O -0.536 6.536 19 C 0.126 3.874 20 N -0.453 5.453 21 C 0.077 3.923 22 C -0.134 4.134 23 C -0.031 4.031 24 C -0.120 4.120 25 C -0.095 4.095 26 C -0.125 4.125 27 C -0.089 4.089 28 C -0.073 4.073 29 C 0.153 3.847 30 H 0.254 0.746 31 H 0.086 0.914 32 H 0.017 0.983 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.415 0.585 40 H 0.162 0.838 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.174 0.826 46 H 0.018 0.982 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.941 -18.037 6.196 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.182 4.182 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.001 3.999 16 N -0.346 5.346 17 C 0.355 3.645 18 O -0.415 6.415 19 C -0.026 4.026 20 N -0.165 5.165 21 C -0.069 4.069 22 C -0.154 4.154 23 C -0.036 4.036 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.143 4.143 27 C -0.108 4.108 28 C -0.076 4.076 29 C 0.027 3.973 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.252 0.748 40 H 0.179 0.821 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.190 0.810 46 H 0.036 0.964 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.104 -17.838 5.730 22.864 hybrid contribution 1.198 0.712 0.606 1.519 sum 14.302 -17.126 6.336 23.195 Atomic orbital electron populations 1.69946 1.05298 1.25564 1.54032 1.25264 0.95459 0.98383 1.00090 0.86348 0.78842 0.83254 0.78130 1.20943 1.21622 1.20831 1.19101 0.90128 0.83479 1.45755 0.92011 1.43949 1.29755 1.05492 1.52130 1.20799 0.87875 0.96116 0.90718 1.22198 0.99808 0.96837 0.99359 1.21335 0.96168 0.97795 0.98396 1.21968 0.98580 0.94298 0.99063 0.90774 1.21590 0.82911 0.98623 0.96818 1.45980 1.20445 1.16979 1.51184 1.17721 0.83999 0.83908 0.78846 1.90566 1.61291 1.28243 1.61355 1.21424 0.94886 0.90406 0.95845 1.67303 1.06729 1.21368 1.21066 1.22238 0.91060 0.99375 0.94256 1.22157 1.00888 0.93612 0.98711 1.18208 0.93377 0.95183 0.96861 1.20920 1.00374 0.93625 0.98910 1.21075 0.94546 0.97388 0.98369 1.21122 0.95756 0.99840 0.97620 1.22198 1.01919 0.91216 0.95452 1.18705 0.94651 0.96067 0.98129 1.20927 0.97630 0.86923 0.91863 0.93543 0.89540 0.96482 0.92818 0.93249 0.93466 0.92461 0.91557 0.91146 0.74780 0.82066 0.83978 0.85035 0.85577 0.85410 0.80967 0.96376 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.02 55.49 0.61 -25.57 16 2 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 3 Si 0.90 21.62 29.56 -169.99 -5.02 16.59 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.94 9.56 -15.06 -0.14 -7.08 16 8 H 0.06 1.65 7.84 -52.48 -0.41 1.24 16 9 N -0.59 -14.67 2.98 -172.31 -0.51 -15.18 16 10 C 0.17 4.06 5.23 -3.71 -0.02 4.04 16 11 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 12 C -0.10 -1.63 5.17 -26.69 -0.14 -1.76 16 13 C -0.12 -1.98 2.37 -90.50 -0.21 -2.19 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.12 1.83 5.07 -4.04 -0.02 1.81 16 16 N -0.70 -10.19 5.32 -61.22 -0.33 -10.51 16 17 C 0.57 8.59 7.77 -12.28 -0.10 8.50 16 18 O -0.54 -8.72 13.44 5.34 0.07 -8.65 16 19 C 0.13 1.77 6.81 -82.55 -0.56 1.20 16 20 N -0.45 -6.00 9.52 -9.81 -0.09 -6.09 16 21 C 0.08 0.80 11.06 -18.03 -0.20 0.60 16 22 C -0.13 -1.20 9.88 -39.28 -0.39 -1.59 16 23 C -0.03 -0.33 5.75 -106.82 -0.61 -0.94 16 24 C -0.12 -1.00 9.82 -39.53 -0.39 -1.39 16 25 C -0.09 -0.75 9.95 -39.89 -0.40 -1.14 16 26 C -0.13 -1.16 9.95 -39.87 -0.40 -1.56 16 27 C -0.09 -1.07 9.23 -39.60 -0.37 -1.43 16 28 C -0.07 -0.93 5.76 -106.59 -0.61 -1.55 16 29 C 0.15 3.15 5.60 -3.70 -0.02 3.13 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.09 2.31 6.19 -51.93 -0.32 1.99 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.42 6.05 7.07 -40.82 -0.29 5.76 16 40 H 0.16 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.17 2.27 4.97 -52.49 -0.26 2.01 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 1.05 7.14 -51.93 -0.37 0.67 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -31.43 378.44 -11.11 -42.54 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.71 Total: 5.29 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.83 Total: -4.13 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.32 Total: -57.35 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.43 -11.11 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266075038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.338 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds