Wall clock time and date at job start Tue Mar 31 2020 23:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00200 * 2 1 4 4 H 1.48507 * 109.47280 * 240.00061 * 3 2 1 5 5 H 1.48496 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47442 * 120.00228 * 3 2 1 7 7 C 1.38821 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99671 * 185.94094 * 7 2 1 9 9 N 1.36928 * 120.00065 * 5.93482 * 7 2 1 10 10 C 1.46922 * 120.63177 * 34.42217 * 9 7 2 11 11 C 1.53193 * 108.77650 * 126.38689 * 10 9 7 12 12 C 1.53038 * 109.31348 * 54.63456 * 11 10 9 13 13 C 1.53042 * 109.53812 * 298.63330 * 12 11 10 14 14 H 1.08994 * 109.50116 * 301.38233 * 13 12 11 15 15 C 1.53002 * 109.49698 * 181.31353 * 13 12 11 16 16 N 1.46502 * 109.47037 * 175.06712 * 15 13 12 17 17 C 1.34771 * 119.99882 * 180.02562 * 16 15 13 18 18 O 1.21535 * 120.00326 * 0.02562 * 17 16 15 19 19 C 1.47956 * 119.99673 * 179.97438 * 17 16 15 20 20 N 1.32198 * 120.15968 * 354.29890 * 19 17 16 21 21 C 1.32027 * 122.67978 * 180.27292 * 20 19 17 22 22 C 1.36683 * 122.03050 * 359.74554 * 21 20 19 23 23 C 1.40539 * 118.84800 * 359.97438 * 22 21 20 24 24 C 1.40317 * 122.22074 * 179.97438 * 23 22 21 25 25 C 1.36204 * 119.45438 * 180.02562 * 24 23 22 26 26 C 1.39387 * 120.99895 * 359.96248 * 25 24 23 27 27 C 1.36253 * 121.08249 * 0.04036 * 26 25 24 28 28 C 1.40094 * 119.54048 * 359.97438 * 27 26 25 29 29 C 1.46943 * 120.60468 * 214.39425 * 9 7 2 30 30 H 0.97001 * 119.99638 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58915 * 6.59744 * 10 9 7 32 32 H 1.09000 * 109.70224 * 246.23906 * 10 9 7 33 33 H 1.09000 * 109.50176 * 294.68477 * 11 10 9 34 34 H 1.09004 * 109.49836 * 174.58426 * 11 10 9 35 35 H 1.08999 * 109.46050 * 178.61543 * 12 11 10 36 36 H 1.08999 * 109.44923 * 58.65043 * 12 11 10 37 37 H 1.09001 * 109.46777 * 55.06834 * 15 13 12 38 38 H 1.08996 * 109.47271 * 295.06786 * 15 13 12 39 39 H 0.97004 * 120.00035 * 359.97438 * 16 15 13 40 40 H 1.08004 * 118.98665 * 179.72610 * 21 20 19 41 41 H 1.08001 * 120.57683 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.27256 * 0.04018 * 24 23 22 43 43 H 1.07998 * 119.50213 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.45575 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.23041 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.55850 * 113.81061 * 29 9 7 47 47 H 1.08997 * 109.61283 * 353.38567 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2023 -0.0005 8 1 3.0859 -1.2049 0.0963 9 7 1.3310 -2.3848 -0.1237 10 6 0.1230 -2.4712 -0.9555 11 6 0.2967 -3.6146 -1.9601 12 6 0.6346 -4.9032 -1.2069 13 6 1.9515 -4.7224 -0.4484 14 1 2.7452 -4.4713 -1.1520 15 6 2.3051 -6.0218 0.2778 16 7 3.6216 -5.8873 0.9063 17 6 4.1427 -6.9149 1.6055 18 8 3.5207 -7.9534 1.7142 19 6 5.4725 -6.7792 2.2397 20 7 6.2009 -5.6962 2.0301 21 6 7.3954 -5.5256 2.5662 22 6 7.9629 -6.4615 3.3848 23 6 7.2504 -7.6405 3.6629 24 6 7.7656 -8.6479 4.4929 25 6 7.0266 -9.7684 4.7240 26 6 5.7668 -9.9287 4.1493 27 6 5.2364 -8.9706 3.3386 28 6 5.9675 -7.8044 3.0776 29 6 1.7973 -3.5915 0.5734 30 1 -0.4850 0.8401 -0.0004 31 1 -0.0198 -1.5326 -1.4911 32 1 -0.7441 -2.6676 -0.3249 33 1 1.1059 -3.3734 -2.6495 34 1 -0.6291 -3.7519 -2.5188 35 1 0.7346 -5.7236 -1.9175 36 1 -0.1634 -5.1303 -0.5000 37 1 2.3264 -6.8437 -0.4379 38 1 1.5563 -6.2257 1.0431 39 1 4.1186 -5.0589 0.8186 40 1 7.9410 -4.6187 2.3510 41 1 8.9416 -6.2975 3.8111 42 1 8.7400 -8.5355 4.9449 43 1 7.4225 -10.5444 5.3623 44 1 5.2020 -10.8271 4.3498 45 1 4.2588 -9.1088 2.9009 46 1 1.0684 -3.8800 1.3307 47 1 2.7590 -3.3923 1.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266075038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:48 Heat of formation + Delta-G solvation = 18.422656 kcal Electronic energy + Delta-G solvation = -28609.302508 eV Core-core repulsion = 24756.333602 eV Total energy + Delta-G solvation = -3852.968905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16735 -40.49875 -39.29174 -38.37181 -36.33153 -34.71755 -33.99509 -32.29065 -32.19559 -32.01209 -30.59480 -27.43188 -27.15090 -25.58005 -24.51473 -23.89625 -23.67689 -22.43844 -21.83420 -20.69299 -19.26300 -18.68203 -18.42447 -18.10898 -17.08845 -16.90084 -16.76542 -16.62717 -15.89838 -15.77446 -15.55705 -15.41349 -15.07578 -14.83306 -14.68880 -14.52236 -14.35421 -13.94948 -13.88137 -13.72202 -13.58213 -13.14180 -13.04186 -12.78599 -12.73883 -12.54247 -12.45939 -12.34035 -11.98039 -11.83243 -11.56044 -11.30337 -11.20373 -11.13391 -11.06004 -10.53956 -10.48506 -10.18950 -10.12196 -9.07174 -8.57116 -7.85905 -5.41256 -0.98144 -0.12485 0.69549 1.46550 1.48632 1.55246 1.59717 1.99459 2.20838 2.50165 3.06314 3.08778 3.29934 3.58939 3.60223 3.69652 3.80873 3.90452 3.98702 4.00148 4.07059 4.19663 4.28380 4.41464 4.42120 4.47977 4.56443 4.60601 4.72837 4.75256 4.82700 4.88073 4.90203 5.00564 5.07428 5.11056 5.11427 5.24271 5.33441 5.37214 5.40717 5.44197 5.54406 5.58386 5.63267 5.67342 5.81721 5.91045 6.32239 6.43941 6.74609 7.05704 7.17722 7.85703 8.40333 9.19148 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.002629 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.941243 B =10647.447538 C =12150.812485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.064 0.936 9 N -0.610 5.610 10 C 0.175 3.825 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.135 3.865 16 N -0.698 5.698 17 C 0.568 3.432 18 O -0.556 6.556 19 C 0.089 3.911 20 N -0.470 5.470 21 C 0.051 3.949 22 C -0.107 4.107 23 C -0.054 4.054 24 C -0.110 4.110 25 C -0.099 4.099 26 C -0.113 4.113 27 C -0.127 4.127 28 C -0.088 4.088 29 C 0.154 3.846 30 H 0.250 0.750 31 H 0.052 0.948 32 H -0.007 1.007 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.148 0.852 45 H 0.151 0.849 46 H 0.006 0.994 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.096 -19.711 7.121 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.396 4.396 8 H 0.082 0.918 9 N -0.333 5.333 10 C 0.049 3.951 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.011 3.989 16 N -0.348 5.348 17 C 0.354 3.646 18 O -0.436 6.436 19 C -0.061 4.061 20 N -0.182 5.182 21 C -0.095 4.095 22 C -0.126 4.126 23 C -0.059 4.059 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.146 4.146 28 C -0.091 4.091 29 C 0.028 3.972 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.011 0.989 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.251 0.749 40 H 0.203 0.797 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.180 0.820 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.024 0.976 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.265 -19.544 6.650 26.282 hybrid contribution 0.317 1.154 0.437 1.274 sum 16.582 -18.390 7.088 25.757 Atomic orbital electron populations 1.70129 1.06719 1.25863 1.55449 1.26034 0.96259 1.01651 1.00398 0.85314 0.77524 0.79002 0.78415 1.20087 1.22003 1.20120 1.19445 0.90544 0.84692 1.44915 0.91818 1.44211 1.29806 1.06157 1.53115 1.20626 0.86915 0.96529 0.91001 1.22024 1.00902 0.95941 0.98162 1.21329 0.95692 0.97454 0.98856 1.21725 0.98991 0.93532 0.97902 0.90857 1.21433 0.83013 0.97692 0.96757 1.45965 1.20333 1.17036 1.51471 1.18021 0.84629 0.83481 0.78469 1.90554 1.62105 1.28848 1.62058 1.21212 0.94887 0.91878 0.98143 1.67215 1.07968 1.21322 1.21667 1.22750 0.90598 1.01028 0.95126 1.22624 1.01775 0.91877 0.96342 1.18596 0.92840 0.96770 0.97705 1.21389 1.01554 0.92515 0.97249 1.21487 0.93662 0.98312 0.98315 1.21460 0.96480 0.99423 0.95697 1.22060 1.01854 0.92664 0.98068 1.18909 0.95942 0.95937 0.98272 1.20999 0.96831 0.86789 0.92543 0.94097 0.93004 0.98880 0.93020 0.91094 0.89945 0.92403 0.90108 0.91693 0.74881 0.79652 0.79751 0.81345 0.81976 0.83432 0.83166 0.97580 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.15 11.02 21.65 0.24 -55.91 16 2 C -0.05 -2.71 5.13 84.86 0.44 -2.28 16 3 Si 0.97 45.24 29.56 68.60 2.03 47.27 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.27 -14.81 9.56 84.04 0.80 -14.01 16 8 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 9 N -0.61 -31.16 2.98 -699.06 -2.08 -33.24 16 10 C 0.17 8.60 5.23 86.36 0.45 9.05 16 11 C -0.13 -4.89 6.08 30.67 0.19 -4.70 16 12 C -0.10 -3.00 5.17 30.62 0.16 -2.85 16 13 C -0.10 -3.34 2.37 -10.71 -0.03 -3.37 16 14 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 15 C 0.13 3.95 5.07 86.38 0.44 4.39 16 16 N -0.70 -21.07 5.32 -465.87 -2.48 -23.54 16 17 C 0.57 17.95 7.77 86.82 0.68 18.62 16 18 O -0.56 -19.06 13.44 -3.82 -0.05 -19.11 16 19 C 0.09 2.59 6.81 42.43 0.29 2.87 16 20 N -0.47 -12.58 9.52 -184.94 -1.76 -14.34 16 21 C 0.05 1.00 11.06 84.30 0.93 1.93 16 22 C -0.11 -1.61 9.88 22.47 0.22 -1.38 16 23 C -0.05 -1.03 5.75 -21.29 -0.12 -1.15 16 24 C -0.11 -1.39 9.82 22.30 0.22 -1.17 16 25 C -0.10 -1.21 9.95 22.07 0.22 -0.99 16 26 C -0.11 -1.92 9.95 22.08 0.22 -1.70 16 27 C -0.13 -3.13 9.23 22.26 0.21 -2.92 16 28 C -0.09 -2.26 5.76 -21.14 -0.12 -2.38 16 29 C 0.15 6.50 5.60 86.36 0.48 6.98 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.05 2.89 6.19 -2.39 -0.01 2.87 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.41 12.51 7.07 -92.71 -0.66 11.86 16 40 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.15 4.28 4.97 -2.98 -0.01 4.27 16 46 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.53 378.44 1.90 -70.63 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.33 Total: 23.30 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.67 Total: 4.95 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.08 Total: -127.04 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.11 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.53 1.90 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266075038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.052 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds