Wall clock time and date at job start Tue Mar 31 2020 22:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99639 * 2 1 4 4 O 1.20818 * 120.00150 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99397 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.50996 * 328.20705 * 5 3 2 7 7 C 1.53098 * 109.53863 * 88.31919 * 5 3 2 8 8 O 1.43099 * 109.28015 * 176.80649 * 7 5 3 9 9 C 1.43020 * 113.68720 * 301.35468 * 8 7 5 10 10 C 1.53095 * 109.29143 * 58.65036 * 9 8 7 11 11 N 1.47012 * 109.25752 * 303.12819 * 10 9 8 12 12 C 1.46906 * 111.00047 * 182.39613 * 11 10 9 13 13 C 1.50693 * 109.47193 * 66.41877 * 12 11 10 14 14 O 1.21281 * 120.00360 * 6.01281 * 13 12 11 15 15 N 1.34777 * 120.00182 * 186.00719 * 13 12 11 16 16 C 1.46491 * 120.00293 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47377 * 90.00091 * 16 15 13 18 18 H 1.08000 * 119.99559 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00244 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99829 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00000 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47044 * 89.99962 * 21 19 17 23 23 H 1.48501 * 109.47121 * 210.00150 * 21 19 17 24 24 H 1.48494 * 109.47094 * 330.00198 * 21 19 17 25 25 C 1.46506 * 119.99850 * 0.02562 * 15 13 12 26 26 C 1.53000 * 109.47047 * 89.99551 * 25 15 13 27 27 C 1.47199 * 109.47101 * 179.97438 * 26 25 15 28 28 N 7.15860 * 102.93078 * 85.09322 * 2 1 3 29 29 H 1.09007 * 109.47181 * 299.99587 * 1 2 3 30 30 H 1.09004 * 109.47221 * 59.99858 * 1 2 3 31 31 H 1.09000 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.50368 * 296.73253 * 7 5 3 33 33 H 1.08993 * 109.51351 * 56.86693 * 7 5 3 34 34 H 1.08998 * 109.50959 * 298.69080 * 9 8 7 35 35 H 1.09002 * 109.50194 * 178.60476 * 9 8 7 36 36 H 1.08996 * 109.51169 * 63.06400 * 10 9 8 37 37 H 1.09005 * 109.50434 * 183.15021 * 10 9 8 38 38 H 1.08995 * 109.47168 * 186.42585 * 12 11 10 39 39 H 1.09000 * 109.46852 * 306.42227 * 12 11 10 40 40 H 1.09003 * 109.47241 * 209.99834 * 16 15 13 41 41 H 1.08998 * 109.47364 * 330.00206 * 16 15 13 42 42 H 0.97006 * 119.99831 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47183 * 209.99989 * 25 15 13 44 44 H 1.09002 * 109.47099 * 329.99813 * 25 15 13 45 45 H 1.08997 * 109.47487 * 300.00252 * 26 25 15 46 46 H 1.09002 * 109.46957 * 60.00175 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9753 0.4220 0.5422 7 6 4.0804 1.2591 -1.4414 8 8 5.5035 1.4091 -1.4373 9 6 5.9526 2.6128 -0.8089 10 6 5.4574 2.6423 0.6395 11 7 3.9923 2.5212 0.6536 12 6 3.4705 2.6023 2.0244 13 6 3.7134 3.9845 2.5734 14 8 4.1667 4.8510 1.8560 15 7 3.4268 4.2579 3.8617 16 6 3.6624 5.6017 4.3952 17 6 2.4259 6.4418 4.2047 18 1 1.5518 6.0170 3.7337 19 6 2.4101 7.7524 4.6327 20 7 3.4743 8.2695 5.2067 21 14 0.8770 8.7935 4.3972 22 1 -0.0026 8.6551 5.5856 23 1 1.2660 10.2171 4.2322 24 1 0.1491 8.3357 3.1866 25 6 2.8797 3.2112 4.7285 26 6 4.0267 2.4617 5.4094 27 6 3.4770 1.4104 6.2807 28 7 3.0539 0.5968 6.9515 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8159 0.3120 -1.9117 33 1 3.6296 2.0809 -1.9977 34 1 5.5562 3.4740 -1.3467 35 1 7.0420 2.6454 -0.8218 36 1 5.8965 1.8112 1.1914 37 1 5.7500 3.5834 1.1051 38 1 2.4002 2.3965 2.0185 39 1 3.9781 1.8684 2.6504 40 1 3.8961 5.5350 5.4578 41 1 4.4983 6.0608 3.8675 42 1 3.4631 9.1915 5.5082 43 1 2.2410 3.6643 5.4866 44 1 2.2942 2.5132 4.1301 45 1 4.6654 2.0086 4.6512 46 1 4.6122 3.1597 6.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267729185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:16 Heat of formation + Delta-G solvation = -110.413277 kcal Electronic energy + Delta-G solvation = -30860.347792 eV Core-core repulsion = 26558.650128 eV Total energy + Delta-G solvation = -4301.697665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13824 -39.68568 -38.87537 -36.93896 -36.73103 -35.65388 -35.07596 -32.89676 -31.92196 -30.87567 -29.73912 -28.09629 -27.26293 -25.13048 -25.00694 -24.03433 -22.49118 -21.97147 -20.27457 -18.66007 -18.02311 -17.72149 -17.35399 -16.95724 -16.47954 -16.41797 -16.19667 -15.97177 -15.56905 -15.31085 -14.77570 -14.64399 -14.40194 -14.35063 -14.15894 -13.71053 -13.61638 -13.39423 -13.11266 -12.88300 -12.53790 -12.46157 -12.37993 -12.27335 -12.08578 -11.85802 -11.65373 -11.46458 -11.28683 -11.03115 -10.99910 -10.87985 -10.86661 -10.62684 -10.54420 -10.18100 -9.95868 -9.69285 -9.06765 -8.48753 -8.46649 -7.85712 -6.08504 -4.12559 1.92613 2.28726 2.67372 2.75699 3.21410 3.27167 3.29734 3.36951 3.43152 3.61762 3.78655 4.17631 4.42246 4.43239 4.50688 4.69644 4.74362 4.87130 4.88323 4.96052 4.99012 5.04328 5.10937 5.12953 5.19825 5.27302 5.29159 5.37773 5.39839 5.43045 5.49809 5.76737 5.79047 5.80534 6.02108 6.09636 6.50471 6.66082 6.86245 6.94163 7.33086 7.41891 7.52086 7.56140 7.88156 8.17324 8.22702 8.84051 8.98352 9.53160 10.99614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.003794 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.818216 B = 7377.912432 C = 8039.937423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.458 3.542 4 O -0.469 6.469 5 C 0.059 3.941 6 H 0.084 0.916 7 C 0.080 3.920 8 O -0.377 6.377 9 C 0.061 3.939 10 C 0.019 3.981 11 N -0.498 5.498 12 C 0.027 3.973 13 C 0.514 3.486 14 O -0.510 6.510 15 N -0.598 5.598 16 C 0.247 3.753 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.117 3.883 26 C -0.050 4.050 27 C 0.216 3.784 28 N -0.444 5.444 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -17.991 -9.416 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.298 3.702 4 O -0.352 6.352 5 C -0.051 4.051 6 H 0.101 0.899 7 C 0.002 3.998 8 O -0.295 6.295 9 C -0.016 4.016 10 C -0.108 4.108 11 N -0.225 5.225 12 C -0.103 4.103 13 C 0.300 3.700 14 O -0.385 6.385 15 N -0.331 5.331 16 C 0.128 3.872 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.009 4.009 26 C -0.092 4.092 27 C -0.102 4.102 28 N -0.121 5.121 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.367 -17.959 -9.076 20.169 hybrid contribution -0.946 0.525 0.481 1.184 sum 0.421 -17.434 -8.596 19.442 Atomic orbital electron populations 1.23303 0.75910 1.03752 1.02917 1.86497 1.23720 1.33305 1.84343 1.23336 0.91330 0.81729 0.73788 1.90772 1.66340 1.35948 1.42178 1.21950 0.88471 0.94314 1.00349 0.89877 1.22513 0.82228 1.03437 0.91619 1.88032 1.20144 1.42251 1.79089 1.22788 0.99881 0.87350 0.91577 1.23008 0.85393 1.03899 0.98471 1.61628 1.11478 1.31919 1.17487 1.22268 1.02158 0.97147 0.88768 1.19902 0.79168 0.88820 0.82141 1.90675 1.43585 1.47593 1.56614 1.48213 1.62968 1.12950 1.08946 1.19342 0.97887 0.75733 0.94199 1.21423 0.99353 0.96535 1.39321 0.92374 1.24895 0.96420 0.97573 0.94988 1.69916 1.28278 1.14913 1.40238 0.86526 0.83020 0.79573 0.78529 1.20683 1.21092 1.19829 1.21292 0.93759 0.90520 0.95364 1.19906 0.99943 0.92576 0.96752 1.29100 0.93497 0.93890 0.93716 1.81217 1.09049 1.11414 1.10419 0.91647 0.91695 0.87983 0.87456 0.91137 0.91303 0.87784 0.93881 0.86701 0.88127 0.92283 0.94715 0.93509 0.92701 0.88554 0.91104 0.87833 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.73 10.57 -39.27 -0.41 -4.14 16 3 C 0.46 5.69 5.96 36.01 0.21 5.91 16 4 O -0.47 -7.56 15.25 -18.74 -0.29 -7.85 16 5 C 0.06 0.67 2.49 -68.75 -0.17 0.50 16 6 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 7 C 0.08 0.81 6.28 37.21 0.23 1.04 16 8 O -0.38 -4.15 10.83 -35.23 -0.38 -4.54 16 9 C 0.06 0.65 7.01 37.21 0.26 0.91 16 10 C 0.02 0.23 5.30 -3.71 -0.02 0.21 16 11 N -0.50 -6.91 3.97 -229.16 -0.91 -7.82 16 12 C 0.03 0.39 3.59 -4.98 -0.02 0.37 16 13 C 0.51 9.55 7.25 -10.99 -0.08 9.47 16 14 O -0.51 -11.65 14.25 5.56 0.08 -11.57 16 15 N -0.60 -10.93 2.46 -175.06 -0.43 -11.36 16 16 C 0.25 5.80 5.16 -5.20 -0.03 5.77 16 17 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16 18 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 21 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.12 1.58 5.08 -4.04 -0.02 1.56 16 26 C -0.05 -0.51 5.97 -29.52 -0.18 -0.69 16 27 C 0.22 2.57 15.43 -20.76 -0.32 2.25 16 28 N -0.44 -6.44 18.54 42.16 0.78 -5.65 16 29 H 0.06 0.56 8.13 -51.92 -0.42 0.13 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 1.65 6.10 -51.93 -0.32 1.34 16 38 H 0.10 1.48 5.58 -51.93 -0.29 1.19 16 39 H 0.06 0.64 6.84 -51.93 -0.36 0.28 16 40 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 41 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 44 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 45 H 0.10 0.85 7.12 -51.93 -0.37 0.48 16 46 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -35.22 388.26 -6.14 -41.36 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.67 Total: -1.80 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 0.52 Total: 15.76 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.18 Total: -49.60 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.00 Total: -28.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.22 -6.14 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267729185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.050 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds