Wall clock time and date at job start Tue Mar 31 2020 22:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99818 * 2 1 4 4 O 1.20820 * 119.99944 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99929 * 180.02562 * 3 2 1 6 6 H 1.09003 * 110.91773 * 56.09617 * 5 3 2 7 7 C 1.55125 * 111.16341 * 292.16661 * 5 3 2 8 8 N 1.47418 * 104.94338 * 205.13198 * 7 5 3 9 9 C 1.34779 * 125.64935 * 204.04051 * 8 7 5 10 10 O 1.21584 * 120.00228 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99644 * 359.95598 * 9 8 7 12 12 C 1.46506 * 119.99944 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47127 * 180.02562 * 12 11 9 14 14 O 1.21294 * 120.00150 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99790 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99594 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00265 * 359.97438 * 16 15 13 18 18 C 1.38959 * 119.99456 * 179.97438 * 16 15 13 19 19 N 1.31403 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99698 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47479 * 59.99922 * 20 18 16 22 22 H 1.48500 * 109.47294 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47216 * 299.99802 * 20 18 16 24 24 C 1.47018 * 108.70403 * 24.00404 * 8 7 5 25 25 C 1.54323 * 107.27113 * 358.94028 * 24 8 7 26 26 H 1.09003 * 110.71837 * 96.34813 * 25 24 8 27 27 C 1.53006 * 110.72037 * 219.44107 * 25 24 8 28 28 C 1.53001 * 117.50071 * 244.90301 * 27 25 24 29 29 C 1.52992 * 117.49835 * 176.24310 * 27 25 24 30 30 H 1.08992 * 109.47626 * 60.00567 * 1 2 3 31 31 H 1.09005 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47176 * 299.99551 * 1 2 3 33 33 H 1.09005 * 110.41308 * 86.20454 * 7 5 3 34 34 H 1.08997 * 110.29939 * 324.00145 * 7 5 3 35 35 H 0.97001 * 120.00429 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47109 * 300.00589 * 12 11 9 37 37 H 1.09002 * 109.46556 * 60.00232 * 12 11 9 38 38 H 0.97001 * 120.00021 * 359.97438 * 15 13 12 39 39 H 0.97005 * 120.00226 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.88526 * 239.51786 * 24 8 7 41 41 H 1.09009 * 109.88324 * 118.35614 * 24 8 7 42 42 H 1.09001 * 115.54797 * 30.57643 * 27 25 24 43 43 H 1.09000 * 117.49461 * 0.02562 * 28 27 25 44 44 H 1.09000 * 117.49752 * 145.01495 * 28 27 25 45 45 H 1.09002 * 117.50015 * 214.98120 * 29 27 25 46 46 H 1.08998 * 117.49929 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9843 0.7283 -0.8459 7 6 4.1546 0.7589 1.3388 8 7 5.4611 1.4303 1.4638 9 6 6.5079 0.9836 2.1857 10 8 7.5421 1.6223 2.2163 11 7 6.4083 -0.1709 2.8739 12 6 7.5460 -0.6562 3.6591 13 6 7.1779 -1.9565 4.3259 14 8 6.0741 -2.4315 4.1611 15 7 8.0754 -2.5917 5.1054 16 6 7.7407 -3.7750 5.7116 17 1 6.7579 -4.1979 5.5649 18 6 8.6662 -4.4302 6.5148 19 7 9.8619 -3.9154 6.6937 20 14 8.2100 -6.0420 7.3414 21 1 7.8583 -7.0470 6.3063 22 1 9.3630 -6.5336 8.1378 23 1 7.0459 -5.8265 8.2379 24 6 5.4333 2.6674 0.6699 25 6 4.0458 2.7505 -0.0005 26 1 3.3713 3.3752 0.5852 27 6 4.1665 3.2806 -1.4307 28 6 3.5200 4.6324 -1.7400 29 6 2.8896 3.3426 -2.2712 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.2856 -0.3227 1.3049 34 1 3.5048 1.0358 2.1689 35 1 5.5833 -0.6805 2.8494 36 1 8.4003 -0.8147 3.0011 37 1 7.8043 0.0817 4.4186 38 1 8.9583 -2.2121 5.2369 39 1 10.5078 -4.3725 7.2548 40 1 6.2120 2.6364 -0.0922 41 1 5.5827 3.5290 1.3207 42 1 5.0963 3.0378 -1.9451 43 1 3.0092 5.1443 -0.9245 44 1 4.0245 5.2789 -2.4581 45 1 2.9793 3.1412 -3.3386 46 1 1.9636 3.0055 -1.8054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593410520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:46 Heat of formation + Delta-G solvation = -138.344562 kcal Electronic energy + Delta-G solvation = -29443.210809 eV Core-core repulsion = 25140.301953 eV Total energy + Delta-G solvation = -4302.908856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14149 -41.20268 -40.16837 -39.29028 -37.47381 -37.21707 -36.23884 -35.31089 -33.37635 -32.80620 -30.86259 -29.03875 -28.50931 -26.53383 -25.24097 -24.21138 -23.22252 -22.03405 -21.37469 -21.12451 -20.82320 -20.09883 -19.40701 -18.71358 -17.89305 -17.77968 -17.37042 -17.10287 -16.99221 -16.52584 -16.26758 -16.08445 -15.86320 -15.54027 -15.14488 -14.93669 -14.64153 -14.28112 -14.16302 -13.99401 -13.85592 -13.64594 -13.51793 -13.44836 -13.06800 -12.88411 -12.78419 -12.53854 -12.45175 -12.28825 -12.12771 -11.90471 -11.76772 -11.66611 -11.54467 -11.37855 -11.12704 -10.88015 -10.54054 -10.35565 -10.08149 -9.64664 -8.49160 -5.99258 0.99793 1.33437 1.39486 1.44627 1.55243 1.69231 1.90839 2.03754 2.29109 2.70045 2.83543 3.15682 3.18117 3.20950 3.41187 3.57871 3.85456 3.94827 4.06389 4.20271 4.21101 4.27174 4.29892 4.32195 4.35671 4.43000 4.44534 4.46795 4.47635 4.67452 4.73187 4.78449 4.84728 5.04169 5.05440 5.11045 5.26670 5.27711 5.32487 5.40051 5.43714 5.87774 5.93637 6.49663 6.63667 6.81996 7.05069 7.38876 7.47922 7.96098 8.67478 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.002258 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.840584 B =12398.420480 C =13861.526900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.480 3.520 4 O -0.515 6.515 5 C -0.084 4.084 6 H 0.142 0.858 7 C 0.111 3.889 8 N -0.633 5.633 9 C 0.725 3.275 10 O -0.623 6.623 11 N -0.722 5.722 12 C 0.141 3.859 13 C 0.434 3.566 14 O -0.623 6.623 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.270 1.270 24 C 0.134 3.866 25 C -0.041 4.041 26 H 0.095 0.905 27 C -0.148 4.148 28 C -0.169 4.169 29 C -0.187 4.187 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.409 0.591 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.122 0.878 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 12.474 -17.195 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.324 3.676 4 O -0.403 6.403 5 C -0.103 4.103 6 H 0.160 0.840 7 C -0.012 4.012 8 N -0.371 5.371 9 C 0.427 3.573 10 O -0.504 6.504 11 N -0.380 5.380 12 C 0.012 3.988 13 C 0.221 3.779 14 O -0.511 6.511 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.195 1.195 24 C 0.012 3.988 25 C -0.060 4.060 26 H 0.113 0.887 27 C -0.167 4.167 28 C -0.206 4.206 29 C -0.224 4.224 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.897 12.798 -17.085 26.031 hybrid contribution -0.159 -0.739 0.699 1.030 sum -15.055 12.058 -16.386 25.309 Atomic orbital electron populations 1.23565 0.74551 1.05652 1.02746 1.86536 1.25141 1.32661 1.83368 1.23232 0.91357 0.81443 0.71615 1.90629 1.67287 1.36791 1.45624 1.22243 0.87504 0.99707 1.00880 0.84046 1.22254 0.83991 0.98913 0.96079 1.47365 1.12441 1.26007 1.51282 1.15318 0.82595 0.80793 0.78636 1.90897 1.29813 1.59834 1.69853 1.44726 1.18198 1.23707 1.51361 1.20625 0.89240 0.93278 0.95627 1.20375 0.85768 0.87922 0.83815 1.90466 1.23637 1.69745 1.67250 1.41828 1.14805 1.21015 1.41798 1.19699 1.00803 0.99225 1.26841 0.89494 1.26129 0.94714 1.02874 0.97460 1.69673 1.05681 1.41273 1.38981 0.84932 0.77901 0.77035 0.78147 1.19419 1.19739 1.19519 1.21955 0.97232 0.85456 0.94162 1.21693 0.94986 0.93253 0.96060 0.88695 1.22200 0.98313 1.02007 0.94143 1.23035 1.03402 0.90462 1.03659 1.23195 0.96883 1.02447 0.99868 0.91334 0.85606 0.91897 0.88618 0.90526 0.75263 0.88759 0.88946 0.76677 0.91088 0.90269 0.91120 0.86037 0.89108 0.87493 0.87920 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -6.08 10.57 -51.40 -0.54 -6.62 16 3 C 0.48 8.51 6.71 71.24 0.48 8.99 16 4 O -0.51 -10.83 13.03 21.98 0.29 -10.54 16 5 C -0.08 -1.32 2.87 -10.07 -0.03 -1.34 16 6 H 0.14 1.82 8.05 -2.39 -0.02 1.81 16 7 C 0.11 2.14 6.04 86.93 0.53 2.67 16 8 N -0.63 -15.44 3.33 -829.33 -2.76 -18.20 16 9 C 0.72 23.54 8.49 179.05 1.52 25.06 16 10 O -0.62 -24.23 16.67 -3.98 -0.07 -24.29 16 11 N -0.72 -24.16 5.49 -482.30 -2.65 -26.81 16 12 C 0.14 5.16 6.15 85.63 0.53 5.68 16 13 C 0.43 19.84 7.85 87.66 0.69 20.53 16 14 O -0.62 -31.67 15.24 -3.07 -0.05 -31.72 16 15 N -0.56 -27.84 5.29 -306.98 -1.62 -29.46 16 16 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 17 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 18 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 19 N -0.92 -48.46 13.05 21.66 0.28 -48.17 16 20 Si 1.00 41.42 29.55 68.60 2.03 43.45 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 C 0.13 2.64 6.47 86.73 0.56 3.20 16 25 C -0.04 -0.64 2.30 -9.60 -0.02 -0.67 16 26 H 0.09 1.67 7.21 -2.39 -0.02 1.65 16 27 C -0.15 -1.96 5.16 -10.79 -0.06 -2.02 16 28 C -0.17 -2.18 10.20 30.62 0.31 -1.86 16 29 C -0.19 -2.58 9.78 30.61 0.30 -2.28 16 30 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.10 1.83 7.30 -2.38 -0.02 1.81 16 34 H 0.08 1.47 8.03 -2.39 -0.02 1.45 16 35 H 0.41 13.40 5.92 -92.71 -0.55 12.85 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 39 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 40 H 0.08 1.52 7.60 -2.39 -0.02 1.50 16 41 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.12 1.39 7.80 -2.39 -0.02 1.37 16 43 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 44 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.09 1.61 5.14 -2.39 -0.01 1.60 16 Total: -1.00 -68.96 384.89 1.95 -67.01 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.25 Total: 43.52 kcal Atomic # 6 Polarization: 34.55 SS G_CDS: 7.28 Total: 41.84 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.75 Total: -122.64 kcal Atomic # 8 Polarization: -72.81 SS G_CDS: -0.37 Total: -73.18 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -68.96 1.95 -67.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593410520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.331 kcal (2) G-P(sol) polarization free energy of solvation -68.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds