Wall clock time and date at job start Tue Mar 31 2020 22:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47176 * 274.89565 * 3 2 1 5 5 H 1.48499 * 109.46994 * 34.89651 * 3 2 1 6 6 H 1.48500 * 109.47224 * 154.89513 * 3 2 1 7 7 C 1.38810 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00134 * 339.75334 * 7 2 1 9 9 N 1.36935 * 119.99968 * 159.75255 * 7 2 1 10 10 C 1.46923 * 120.63171 * 332.79428 * 9 7 2 11 11 C 1.53192 * 108.78120 * 233.58989 * 10 9 7 12 12 C 1.53039 * 109.30981 * 305.36447 * 11 10 9 13 13 C 1.53043 * 109.53943 * 61.36661 * 12 11 10 14 14 H 1.08997 * 109.49784 * 58.61322 * 13 12 11 15 15 C 1.52998 * 109.50072 * 178.68534 * 13 12 11 16 16 N 1.46498 * 109.47109 * 184.99960 * 15 13 12 17 17 C 1.34783 * 119.99911 * 179.97438 * 16 15 13 18 18 O 1.21553 * 119.99910 * 359.97438 * 17 16 15 19 19 C 1.47878 * 119.99918 * 179.97438 * 17 16 15 20 20 C 1.40570 * 119.70886 * 359.72274 * 19 17 16 21 21 C 1.35816 * 120.74114 * 180.24910 * 20 19 17 22 22 C 1.40549 * 119.97945 * 0.05678 * 21 20 19 23 23 C 1.40819 * 121.13582 * 180.02562 * 22 21 20 24 24 C 1.36550 * 118.20079 * 179.97438 * 23 22 21 25 25 C 1.39423 * 119.93906 * 359.97438 * 24 23 22 26 26 N 1.31021 * 121.71326 * 0.02562 * 25 24 23 27 27 C 1.33744 * 121.34839 * 359.97438 * 26 25 24 28 28 C 1.38411 * 119.70768 * 179.97438 * 19 17 16 29 29 C 1.46930 * 120.63089 * 152.77746 * 9 7 2 30 30 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58459 * 113.79859 * 10 9 7 32 32 H 1.09000 * 109.58677 * 353.38072 * 10 9 7 33 33 H 1.08998 * 109.50006 * 185.41470 * 11 10 9 34 34 H 1.09002 * 109.52471 * 65.33198 * 11 10 9 35 35 H 1.08996 * 109.46191 * 301.34497 * 12 11 10 36 36 H 1.08997 * 109.45223 * 181.37575 * 12 11 10 37 37 H 1.09002 * 109.47222 * 64.99269 * 15 13 12 38 38 H 1.09003 * 109.46835 * 304.99905 * 15 13 12 39 39 H 0.96999 * 120.00389 * 359.97438 * 16 15 13 40 40 H 1.08008 * 119.62992 * 0.27712 * 20 19 17 41 41 H 1.07996 * 120.01058 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.89876 * 359.96797 * 23 22 21 43 43 H 1.08000 * 120.03178 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.14010 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.22663 * 359.69603 * 28 19 17 46 46 H 1.08997 * 109.58474 * 6.62665 * 29 9 7 47 47 H 1.09003 * 109.58279 * 246.19873 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5032 2.6205 0.8010 6 1 3.5957 1.4124 0.5940 7 6 2.0102 -1.2022 -0.0005 8 1 1.5202 -2.1087 0.3227 9 7 3.3160 -1.2387 -0.4110 10 6 3.8267 -0.2513 -1.3717 11 6 4.4782 -0.9937 -2.5427 12 6 5.5407 -1.9547 -2.0043 13 6 4.8803 -2.9857 -1.0862 14 1 4.1171 -3.5311 -1.6412 15 6 5.9380 -3.9656 -0.5745 16 7 5.2886 -5.0211 0.2068 17 6 6.0286 -6.0025 0.7597 18 8 7.2348 -6.0121 0.6097 19 6 5.3731 -7.0676 1.5489 20 6 3.9785 -7.0472 1.7234 21 6 3.3553 -8.0120 2.4483 22 6 4.1065 -9.0451 3.0348 23 6 3.4855 -10.0580 3.7908 24 6 4.2728 -11.0330 4.3332 25 6 5.6520 -11.0066 4.1304 26 7 6.2267 -10.0627 3.4265 27 6 5.5133 -9.0788 2.8683 28 6 6.1389 -8.0728 2.1136 29 6 4.2333 -2.2658 0.1014 30 1 -0.4850 0.8401 0.0004 31 1 4.5667 0.3837 -0.8845 32 1 3.0029 0.3603 -1.7397 33 1 4.9455 -0.2742 -3.2149 34 1 3.7187 -1.5576 -3.0843 35 1 6.2868 -1.3931 -1.4423 36 1 6.0227 -2.4664 -2.8373 37 1 6.6515 -3.4341 0.0552 38 1 6.4613 -4.4100 -1.4211 39 1 4.3260 -5.0136 0.3263 40 1 3.3958 -6.2557 1.2756 41 1 2.2832 -7.9846 2.5752 42 1 2.4156 -10.0635 3.9377 43 1 3.8275 -11.8243 4.9179 44 1 6.2624 -11.7844 4.5650 45 1 7.2099 -8.0833 1.9751 46 1 3.6779 -2.9834 0.7051 47 1 5.0065 -1.7950 0.7086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602896611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:08 Heat of formation + Delta-G solvation = 37.725455 kcal Electronic energy + Delta-G solvation = -28283.347962 eV Core-core repulsion = 24431.216089 eV Total energy + Delta-G solvation = -3852.131873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20736 -39.81897 -38.17838 -36.96665 -35.08121 -33.81427 -33.12093 -31.48614 -30.89250 -30.40645 -30.32241 -26.45896 -25.35943 -24.53394 -24.18647 -22.47377 -22.06538 -21.54112 -20.94609 -19.53308 -18.56628 -17.82074 -17.21928 -16.78122 -16.29256 -15.80743 -15.53230 -15.35032 -14.80287 -14.73834 -14.36973 -14.25173 -14.03446 -13.93080 -13.77954 -13.48467 -13.38891 -13.24882 -12.67859 -12.58104 -12.19570 -12.18272 -11.94840 -11.87175 -11.66569 -11.51638 -10.90373 -10.85805 -10.64699 -10.56742 -10.20516 -10.08126 -9.89106 -9.83841 -9.69819 -9.47553 -9.21984 -9.00115 -8.66632 -8.61018 -7.02729 -5.99931 -3.36051 -0.06307 0.31329 1.56501 2.21598 3.05575 3.13523 3.29265 3.45928 3.48521 3.81405 3.94126 4.21350 4.34057 4.48992 4.50256 4.54922 4.62923 4.75625 4.79322 4.89677 5.11091 5.13228 5.18965 5.24010 5.38237 5.42078 5.52621 5.56430 5.58926 5.69677 5.75653 5.78214 5.92645 5.98326 6.01213 6.06520 6.08708 6.14368 6.25987 6.33679 6.37973 6.42239 6.52560 6.52736 6.65179 6.67108 6.92882 7.44809 7.53972 7.89979 8.12688 8.26407 8.88142 9.66973 10.04893 11.15860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.002404 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.281646 B =11643.275504 C =12990.928633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.120 4.120 14 H 0.079 0.921 15 C 0.127 3.873 16 N -0.717 5.717 17 C 0.556 3.444 18 O -0.538 6.538 19 C -0.114 4.114 20 C -0.089 4.089 21 C -0.098 4.098 22 C -0.087 4.087 23 C -0.060 4.060 24 C -0.170 4.170 25 C 0.128 3.872 26 N -0.467 5.467 27 C 0.115 3.885 28 C -0.025 4.025 29 C 0.156 3.844 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.404 0.596 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -19.758 4.595 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.097 0.903 15 C 0.003 3.997 16 N -0.369 5.369 17 C 0.343 3.657 18 O -0.416 6.416 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.089 4.089 23 C -0.086 4.086 24 C -0.190 4.190 25 C -0.045 4.045 26 N -0.174 5.174 27 C -0.005 4.005 28 C -0.045 4.045 29 C 0.030 3.970 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.240 0.760 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.077 0.923 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.871 -19.526 4.303 22.298 hybrid contribution -1.113 0.999 0.220 1.512 sum 8.758 -18.527 4.522 20.986 Atomic orbital electron populations 1.69828 1.05726 1.26593 1.52991 1.25264 0.95228 0.97647 0.99419 0.86934 0.80119 0.84600 0.76925 1.21686 1.23213 1.19464 1.18883 0.84710 0.94684 1.40648 0.89753 1.44330 1.08399 1.32722 1.47455 1.21355 0.97152 0.92000 0.89645 1.21997 0.98060 0.98550 0.98740 1.21342 0.97744 0.96701 0.98095 1.21963 0.97017 0.95857 0.99232 0.90304 1.21491 0.95611 0.87627 0.94938 1.45991 1.11419 1.26214 1.53240 1.18158 0.86711 0.81565 0.79300 1.90777 1.13893 1.76325 1.60648 1.19950 0.93881 0.96868 1.01156 1.21064 0.93233 0.98779 0.97654 1.20923 1.00231 0.93425 0.97107 1.18986 0.94180 0.96757 0.99026 1.21552 1.00713 0.92438 0.93850 1.21973 0.95306 1.00206 1.01520 1.23019 0.92718 0.95455 0.93338 1.68031 1.39395 1.01929 1.08083 1.18762 0.89554 0.94546 0.97662 1.21226 1.01120 0.90135 0.91988 1.20935 0.92457 0.91224 0.92430 0.92752 0.95658 0.91119 0.92654 0.91708 0.92267 0.92702 0.91264 0.91525 0.75978 0.84631 0.84341 0.84026 0.84301 0.82191 0.83198 0.92267 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.22 13.97 55.49 0.78 -26.45 16 2 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 3 Si 0.88 22.07 24.34 -169.99 -4.14 17.94 16 4 H -0.29 -6.99 6.70 56.52 0.38 -6.61 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.63 6.45 56.52 0.36 -6.26 16 7 C -0.26 -7.00 10.04 -15.06 -0.15 -7.15 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 9 N -0.61 -13.71 2.77 -172.31 -0.48 -14.19 16 10 C 0.12 2.61 4.19 -3.71 -0.02 2.60 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 12 C -0.10 -1.46 5.17 -26.69 -0.14 -1.60 16 13 C -0.12 -1.77 2.37 -90.50 -0.21 -1.99 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.69 5.07 -4.04 -0.02 1.67 16 16 N -0.72 -9.05 5.28 -61.24 -0.32 -9.37 16 17 C 0.56 7.76 7.77 -12.31 -0.10 7.66 16 18 O -0.54 -9.19 16.30 5.32 0.09 -9.11 16 19 C -0.11 -1.38 5.87 -105.01 -0.62 -1.99 16 20 C -0.09 -0.89 9.44 -39.57 -0.37 -1.26 16 21 C -0.10 -0.88 9.74 -39.58 -0.39 -1.27 16 22 C -0.09 -0.86 5.75 -106.72 -0.61 -1.48 16 23 C -0.06 -0.43 9.88 -39.22 -0.39 -0.82 16 24 C -0.17 -1.08 10.03 -39.75 -0.40 -1.48 16 25 C 0.13 1.01 11.15 -17.46 -0.19 0.82 16 26 N -0.47 -5.30 10.34 -10.98 -0.11 -5.41 16 27 C 0.12 1.36 6.60 -84.87 -0.56 0.80 16 28 C -0.03 -0.31 9.56 -38.68 -0.37 -0.68 16 29 C 0.16 2.83 5.60 -3.70 -0.02 2.81 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.03 0.54 6.98 -51.93 -0.36 0.17 16 32 H 0.07 1.65 4.49 -51.93 -0.23 1.41 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 4.50 5.69 -40.82 -0.23 4.27 16 40 H 0.14 1.14 6.34 -52.48 -0.33 0.81 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.15 1.95 7.60 -52.49 -0.40 1.55 16 46 H 0.06 1.04 7.14 -51.93 -0.37 0.66 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -33.80 374.79 -9.97 -43.77 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.62 Total: 2.37 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -4.81 Total: -5.20 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.14 Total: -55.42 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.80 -9.97 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.495 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds