Wall clock time and date at job start Tue Mar 31 2020 22:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47176 * 274.89565 * 3 2 1 5 5 H 1.48499 * 109.46994 * 34.89651 * 3 2 1 6 6 H 1.48500 * 109.47224 * 154.89513 * 3 2 1 7 7 C 1.38810 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00134 * 339.75334 * 7 2 1 9 9 N 1.36935 * 119.99968 * 159.75255 * 7 2 1 10 10 C 1.46923 * 120.63171 * 332.79428 * 9 7 2 11 11 C 1.53192 * 108.78120 * 233.58989 * 10 9 7 12 12 C 1.53039 * 109.30981 * 305.36447 * 11 10 9 13 13 C 1.53043 * 109.53943 * 61.36661 * 12 11 10 14 14 H 1.08997 * 109.49784 * 58.61322 * 13 12 11 15 15 C 1.52998 * 109.50072 * 178.68534 * 13 12 11 16 16 N 1.46498 * 109.47109 * 184.99960 * 15 13 12 17 17 C 1.34783 * 119.99911 * 179.97438 * 16 15 13 18 18 O 1.21553 * 119.99910 * 359.97438 * 17 16 15 19 19 C 1.47878 * 119.99918 * 179.97438 * 17 16 15 20 20 C 1.40570 * 119.70886 * 359.72274 * 19 17 16 21 21 C 1.35816 * 120.74114 * 180.24910 * 20 19 17 22 22 C 1.40549 * 119.97945 * 0.05678 * 21 20 19 23 23 C 1.40819 * 121.13582 * 180.02562 * 22 21 20 24 24 C 1.36550 * 118.20079 * 179.97438 * 23 22 21 25 25 C 1.39423 * 119.93906 * 359.97438 * 24 23 22 26 26 N 1.31021 * 121.71326 * 0.02562 * 25 24 23 27 27 C 1.33744 * 121.34839 * 359.97438 * 26 25 24 28 28 C 1.38411 * 119.70768 * 179.97438 * 19 17 16 29 29 C 1.46930 * 120.63089 * 152.77746 * 9 7 2 30 30 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58459 * 113.79859 * 10 9 7 32 32 H 1.09000 * 109.58677 * 353.38072 * 10 9 7 33 33 H 1.08998 * 109.50006 * 185.41470 * 11 10 9 34 34 H 1.09002 * 109.52471 * 65.33198 * 11 10 9 35 35 H 1.08996 * 109.46191 * 301.34497 * 12 11 10 36 36 H 1.08997 * 109.45223 * 181.37575 * 12 11 10 37 37 H 1.09002 * 109.47222 * 64.99269 * 15 13 12 38 38 H 1.09003 * 109.46835 * 304.99905 * 15 13 12 39 39 H 0.96999 * 120.00389 * 359.97438 * 16 15 13 40 40 H 1.08008 * 119.62992 * 0.27712 * 20 19 17 41 41 H 1.07996 * 120.01058 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.89876 * 359.96797 * 23 22 21 43 43 H 1.08000 * 120.03178 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.14010 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.22663 * 359.69603 * 28 19 17 46 46 H 1.08997 * 109.58474 * 6.62665 * 29 9 7 47 47 H 1.09003 * 109.58279 * 246.19873 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1061 -1.3950 5 1 1.5032 2.6205 0.8010 6 1 3.5957 1.4124 0.5940 7 6 2.0102 -1.2022 -0.0005 8 1 1.5202 -2.1087 0.3227 9 7 3.3160 -1.2387 -0.4110 10 6 3.8267 -0.2513 -1.3717 11 6 4.4782 -0.9937 -2.5427 12 6 5.5407 -1.9547 -2.0043 13 6 4.8803 -2.9857 -1.0862 14 1 4.1171 -3.5311 -1.6412 15 6 5.9380 -3.9656 -0.5745 16 7 5.2886 -5.0211 0.2068 17 6 6.0286 -6.0025 0.7597 18 8 7.2348 -6.0121 0.6097 19 6 5.3731 -7.0676 1.5489 20 6 3.9785 -7.0472 1.7234 21 6 3.3553 -8.0120 2.4483 22 6 4.1065 -9.0451 3.0348 23 6 3.4855 -10.0580 3.7908 24 6 4.2728 -11.0330 4.3332 25 6 5.6520 -11.0066 4.1304 26 7 6.2267 -10.0627 3.4265 27 6 5.5133 -9.0788 2.8683 28 6 6.1389 -8.0728 2.1136 29 6 4.2333 -2.2658 0.1014 30 1 -0.4850 0.8401 0.0004 31 1 4.5667 0.3837 -0.8845 32 1 3.0029 0.3603 -1.7397 33 1 4.9455 -0.2742 -3.2149 34 1 3.7187 -1.5576 -3.0843 35 1 6.2868 -1.3931 -1.4423 36 1 6.0227 -2.4664 -2.8373 37 1 6.6515 -3.4341 0.0552 38 1 6.4613 -4.4100 -1.4211 39 1 4.3260 -5.0136 0.3263 40 1 3.3958 -6.2557 1.2756 41 1 2.2832 -7.9846 2.5752 42 1 2.4156 -10.0635 3.9377 43 1 3.8275 -11.8243 4.9179 44 1 6.2624 -11.7844 4.5650 45 1 7.2099 -8.0833 1.9751 46 1 3.6779 -2.9834 0.7051 47 1 5.0065 -1.7950 0.7086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602896611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:07 Heat of formation + Delta-G solvation = 15.703074 kcal Electronic energy + Delta-G solvation = -28284.302924 eV Core-core repulsion = 24431.216089 eV Total energy + Delta-G solvation = -3853.086835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95593 -40.85754 -39.58214 -37.77182 -36.42636 -34.75745 -34.48912 -32.91712 -32.41879 -31.43342 -31.05853 -27.68776 -27.07133 -25.46616 -24.88791 -23.68478 -23.29209 -22.81743 -21.98092 -20.89321 -19.50136 -18.74774 -18.49845 -17.91898 -17.32609 -17.07860 -16.83523 -16.65169 -15.89263 -15.55476 -15.50418 -15.29190 -15.21619 -15.06321 -14.87961 -14.81494 -14.59073 -14.20969 -13.96583 -13.92587 -13.70701 -13.29412 -13.19586 -12.95477 -12.73988 -12.56398 -12.53455 -12.17918 -12.11562 -11.70098 -11.57603 -11.56734 -11.39723 -11.26605 -11.07728 -10.66754 -10.51366 -10.21793 -9.83058 -9.35515 -8.91841 -8.15448 -5.46277 -0.80174 -0.38654 0.84568 1.29712 1.41578 1.42167 1.49468 2.03663 2.23804 2.42201 3.06428 3.07090 3.25488 3.32127 3.51190 3.61804 3.80805 3.84136 3.93056 3.95997 4.01200 4.03208 4.05724 4.23121 4.27588 4.40278 4.53616 4.56069 4.64001 4.72171 4.77931 4.79160 4.83976 4.86105 4.93947 4.99077 5.07405 5.09057 5.13357 5.14250 5.25579 5.29461 5.31123 5.37428 5.50014 5.57846 5.75529 5.87762 6.13935 6.41356 6.88768 6.92736 7.06418 7.63823 8.05021 9.04037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.002404 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.281646 B =11643.275504 C =12990.928633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.035 4.035 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.315 1.315 6 H -0.263 1.263 7 C -0.243 4.243 8 H 0.061 0.939 9 N -0.620 5.620 10 C 0.115 3.885 11 C -0.127 4.127 12 C -0.099 4.099 13 C -0.104 4.104 14 H 0.077 0.923 15 C 0.135 3.865 16 N -0.710 5.710 17 C 0.556 3.444 18 O -0.576 6.576 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.087 4.087 22 C -0.101 4.101 23 C -0.061 4.061 24 C -0.161 4.161 25 C 0.127 3.873 26 N -0.509 5.509 27 C 0.093 3.907 28 C -0.045 4.045 29 C 0.151 3.849 30 H 0.260 0.740 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.411 0.589 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.190 0.810 45 H 0.130 0.870 46 H 0.060 0.940 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -21.320 4.858 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.230 4.230 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.244 1.244 6 H -0.187 1.187 7 C -0.372 4.372 8 H 0.078 0.922 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.137 4.137 13 C -0.124 4.124 14 H 0.095 0.905 15 C 0.011 3.989 16 N -0.361 5.361 17 C 0.344 3.656 18 O -0.458 6.458 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.086 4.086 24 C -0.180 4.180 25 C -0.046 4.046 26 N -0.218 5.218 27 C -0.027 4.027 28 C -0.065 4.065 29 C 0.026 3.974 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.249 0.751 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.193 0.807 43 H 0.197 0.803 44 H 0.207 0.793 45 H 0.148 0.852 46 H 0.078 0.922 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 10.167 -21.094 4.549 23.854 hybrid contribution -1.195 1.267 0.241 1.758 sum 8.972 -19.827 4.790 22.284 Atomic orbital electron populations 1.69945 1.07224 1.27019 1.56057 1.25842 0.95785 1.00690 1.00669 0.85984 0.78831 0.80817 0.77198 1.20499 1.24388 1.18731 1.18903 0.86386 0.93594 1.38335 0.92169 1.44484 1.07644 1.33949 1.48304 1.21436 0.96542 0.92084 0.90897 1.21904 0.98371 0.99107 0.97185 1.21366 0.97111 0.96225 0.98980 1.21749 0.97092 0.95863 0.97719 0.90497 1.21378 0.94965 0.87352 0.95192 1.45938 1.11759 1.25717 1.52716 1.18450 0.86279 0.81869 0.78981 1.90747 1.15508 1.77307 1.62199 1.19841 0.94890 0.96387 1.01578 1.21188 0.92224 0.99906 0.98632 1.21293 1.01604 0.92231 0.95403 1.19276 0.93466 0.97932 0.99654 1.21995 1.02477 0.91454 0.92698 1.22417 0.94428 1.00578 1.00594 1.23698 0.94290 0.94822 0.91741 1.68022 1.40601 1.03153 1.09979 1.18864 0.90772 0.94776 0.98266 1.21160 1.00383 0.91434 0.93528 1.21114 0.91850 0.90432 0.93980 0.93091 0.95253 0.93634 0.90049 0.92514 0.91554 0.89738 0.91677 0.90579 0.75075 0.83325 0.81253 0.80705 0.80346 0.79329 0.85220 0.92181 0.95533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.82 13.97 21.65 0.30 -58.52 16 2 C -0.04 -2.01 5.24 84.86 0.44 -1.57 16 3 Si 0.94 46.14 24.34 68.60 1.67 47.81 16 4 H -0.28 -12.95 6.70 99.48 0.67 -12.29 16 5 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 6 H -0.26 -12.37 6.45 99.48 0.64 -11.73 16 7 C -0.24 -13.14 10.04 84.03 0.84 -12.29 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 N -0.62 -27.58 2.77 -699.08 -1.94 -29.52 16 10 C 0.12 4.68 4.19 86.36 0.36 5.04 16 11 C -0.13 -3.91 6.08 30.67 0.19 -3.73 16 12 C -0.10 -2.54 5.17 30.62 0.16 -2.38 16 13 C -0.10 -2.85 2.37 -10.71 -0.03 -2.88 16 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.13 3.37 5.07 86.38 0.44 3.81 16 16 N -0.71 -17.52 5.28 -465.93 -2.46 -19.98 16 17 C 0.56 15.87 7.77 86.80 0.67 16.54 16 18 O -0.58 -20.41 16.30 -3.88 -0.06 -20.47 16 19 C -0.12 -3.06 5.87 -20.11 -0.12 -3.18 16 20 C -0.10 -1.96 9.44 22.28 0.21 -1.75 16 21 C -0.09 -1.41 9.74 22.27 0.22 -1.19 16 22 C -0.10 -1.85 5.75 -21.23 -0.12 -1.97 16 23 C -0.06 -0.68 9.88 22.51 0.22 -0.46 16 24 C -0.16 -1.47 10.03 22.16 0.22 -1.24 16 25 C 0.13 1.77 11.15 85.10 0.95 2.71 16 26 N -0.51 -11.59 10.34 -188.65 -1.95 -13.54 16 27 C 0.09 2.24 6.60 40.25 0.27 2.50 16 28 C -0.05 -1.21 9.56 22.85 0.22 -0.99 16 29 C 0.15 5.31 5.60 86.36 0.48 5.80 16 30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.03 1.17 6.98 -2.39 -0.02 1.16 16 32 H 0.05 2.08 4.49 -2.39 -0.01 2.07 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.41 8.86 5.69 -92.71 -0.53 8.33 16 40 H 0.15 2.36 6.34 -2.91 -0.02 2.34 16 41 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 43 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 44 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.13 3.82 7.60 -2.91 -0.02 3.80 16 46 H 0.06 2.06 7.14 -2.39 -0.02 2.05 16 47 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.77 374.79 1.55 -75.22 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.36 Total: 16.23 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.63 Total: 2.76 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.05 Total: -121.55 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.06 Total: -20.47 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -76.77 1.55 -75.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.926 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds