Wall clock time and date at job start Tue Mar 31 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48500 * 109.47285 * 274.90598 * 3 2 1 5 5 H 1.48499 * 109.47374 * 34.90684 * 3 2 1 6 6 H 1.48503 * 109.47170 * 154.90481 * 3 2 1 7 7 C 1.38811 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 339.73537 * 7 2 1 9 9 N 1.36935 * 120.00389 * 159.73218 * 7 2 1 10 10 C 1.46933 * 120.63082 * 152.74431 * 9 7 2 11 11 C 1.53193 * 108.77316 * 126.43556 * 10 9 7 12 12 C 1.53044 * 109.31112 * 54.63718 * 11 10 9 13 13 C 1.53042 * 109.53852 * 298.63440 * 12 11 10 14 14 H 1.08996 * 109.49596 * 301.37869 * 13 12 11 15 15 C 1.53002 * 109.49671 * 181.31683 * 13 12 11 16 16 N 1.46504 * 109.47008 * 175.06250 * 15 13 12 17 17 C 1.34772 * 119.99837 * 180.02562 * 16 15 13 18 18 O 1.21546 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.47886 * 119.99858 * 179.97438 * 17 16 15 20 20 C 1.40575 * 119.70485 * 0.02562 * 19 17 16 21 21 C 1.35809 * 120.73430 * 179.74194 * 20 19 17 22 22 C 1.40543 * 119.98478 * 359.97438 * 21 20 19 23 23 C 1.40826 * 121.13710 * 179.97438 * 22 21 20 24 24 C 1.36549 * 118.20058 * 180.02562 * 23 22 21 25 25 C 1.39428 * 119.93989 * 359.97438 * 24 23 22 26 26 N 1.31017 * 121.71112 * 0.02562 * 25 24 23 27 27 C 1.33744 * 121.35308 * 0.02562 * 26 25 24 28 28 C 1.38399 * 119.70617 * 179.72681 * 19 17 16 29 29 C 1.46933 * 120.60670 * 332.77277 * 9 7 2 30 30 H 0.97002 * 119.99960 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58252 * 6.65072 * 10 9 7 32 32 H 1.09000 * 109.58408 * 246.22368 * 10 9 7 33 33 H 1.08996 * 109.50002 * 294.68840 * 11 10 9 34 34 H 1.08997 * 109.49328 * 174.58404 * 11 10 9 35 35 H 1.08998 * 109.45950 * 178.61324 * 12 11 10 36 36 H 1.08999 * 109.44676 * 58.64822 * 12 11 10 37 37 H 1.09004 * 109.46851 * 55.06186 * 15 13 12 38 38 H 1.09000 * 109.47156 * 295.06140 * 15 13 12 39 39 H 0.96997 * 119.99606 * 359.97438 * 16 15 13 40 40 H 1.08002 * 119.63181 * 359.71875 * 20 19 17 41 41 H 1.08002 * 120.00893 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.89565 * 0.02562 * 23 22 21 43 43 H 1.07999 * 120.03175 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.14521 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.23562 * 0.25520 * 28 19 17 46 46 H 1.08997 * 109.56311 * 113.75727 * 29 9 7 47 47 H 1.09000 * 109.61208 * 353.33543 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3940 2.1063 -1.3949 5 1 1.5034 2.6205 0.8012 6 1 3.5957 1.4124 0.5938 7 6 2.0102 -1.2021 -0.0005 8 1 1.5204 -2.1087 0.3230 9 7 3.3160 -1.2387 -0.4113 10 6 4.2337 -2.2653 0.1015 11 6 4.8807 -2.9856 -1.0857 12 6 5.5408 -1.9548 -2.0044 13 6 4.4780 -0.9943 -2.5430 14 1 3.7188 -1.5586 -3.0845 15 6 5.1338 0.0155 -3.4871 16 7 4.1009 0.8593 -4.0933 17 6 4.4473 1.8265 -4.9656 18 8 5.6165 1.9985 -5.2497 19 6 3.4047 2.6779 -5.5780 20 6 2.0542 2.4733 -5.2454 21 6 1.0802 3.2464 -5.7914 22 6 1.4178 4.2646 -6.6993 23 6 0.4275 5.0801 -7.2802 24 6 0.8228 6.0511 -8.1552 25 6 2.1758 6.2131 -8.4503 26 7 3.0947 5.4527 -7.9081 27 6 2.7749 4.4830 -7.0443 28 6 3.7676 3.6731 -6.4687 29 6 3.8257 -0.2515 -1.3729 30 1 -0.4850 0.8401 0.0004 31 1 3.6784 -2.9828 0.7056 32 1 5.0067 -1.7940 0.7085 33 1 4.1173 -3.5311 -1.6403 34 1 5.6345 -3.6833 -0.7209 35 1 6.0232 -2.4666 -2.8370 36 1 6.2868 -1.3928 -1.4424 37 1 5.6740 -0.5167 -4.2701 38 1 5.8292 0.6394 -2.9255 39 1 3.1678 0.7214 -3.8674 40 1 1.7884 1.6925 -4.5483 41 1 0.0463 3.0787 -5.5279 42 1 -0.6162 4.9413 -7.0402 43 1 0.0881 6.6936 -8.6176 44 1 2.4741 6.9854 -9.1438 45 1 4.8070 3.8258 -6.7196 46 1 4.5651 0.3843 -0.8859 47 1 3.0017 0.3593 -1.7416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602896612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:12 Heat of formation + Delta-G solvation = 37.430783 kcal Electronic energy + Delta-G solvation = -28894.944601 eV Core-core repulsion = 25042.799950 eV Total energy + Delta-G solvation = -3852.144651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12895 -39.75482 -38.18107 -36.88591 -34.94595 -33.73761 -33.17272 -31.58360 -30.81231 -30.34700 -30.23709 -26.35214 -25.35214 -24.48460 -24.10947 -22.62167 -22.26763 -21.06505 -20.90716 -19.50002 -18.51905 -17.73697 -17.13918 -16.90051 -16.27118 -15.76064 -15.62906 -15.13076 -14.71712 -14.57544 -14.28180 -14.23725 -14.00755 -13.91317 -13.70946 -13.36919 -13.35724 -13.28797 -12.89466 -12.51636 -12.15719 -12.10423 -11.87001 -11.78473 -11.64590 -11.49595 -10.86179 -10.82131 -10.64647 -10.56724 -10.17398 -10.07649 -9.86332 -9.77857 -9.75538 -9.51542 -9.14131 -8.92176 -8.69657 -8.52727 -7.04299 -6.02720 -3.38318 0.01476 0.39542 1.64160 2.30038 3.13430 3.20927 3.21962 3.42793 3.45563 3.89315 4.01453 4.29666 4.41359 4.43781 4.57839 4.63553 4.71176 4.77731 4.87381 4.97840 5.12585 5.19295 5.20863 5.26191 5.38515 5.49788 5.57379 5.60472 5.64131 5.75059 5.80161 5.81545 5.98918 6.01849 6.06109 6.09078 6.11792 6.21868 6.26254 6.30017 6.43672 6.49305 6.51445 6.53621 6.64653 6.67381 6.92374 7.52545 7.60811 7.88562 8.19748 8.25509 8.86807 9.64245 10.02834 11.13048 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.003172 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.533045 B = 8826.351477 C =10293.876272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.878 3.122 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.120 4.120 14 H 0.081 0.919 15 C 0.125 3.875 16 N -0.718 5.718 17 C 0.557 3.443 18 O -0.539 6.539 19 C -0.114 4.114 20 C -0.089 4.089 21 C -0.098 4.098 22 C -0.087 4.087 23 C -0.059 4.059 24 C -0.171 4.171 25 C 0.127 3.873 26 N -0.466 5.466 27 C 0.115 3.885 28 C -0.025 4.025 29 C 0.134 3.866 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.405 0.595 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.151 0.849 46 H 0.027 0.973 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 6.856 -14.941 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.708 3.292 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.099 0.901 15 C 0.001 3.999 16 N -0.370 5.370 17 C 0.343 3.657 18 O -0.417 6.417 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.089 4.089 23 C -0.085 4.085 24 C -0.191 4.191 25 C -0.046 4.046 26 N -0.174 5.174 27 C -0.006 4.006 28 C -0.045 4.045 29 C 0.008 3.992 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.241 0.759 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.178 0.822 45 H 0.168 0.832 46 H 0.045 0.955 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.429 7.057 -15.204 17.337 hybrid contribution -1.084 0.899 0.385 1.460 sum 3.346 7.956 -14.819 17.149 Atomic orbital electron populations 1.69833 1.05623 1.26463 1.53142 1.25261 0.95203 0.97355 0.99704 0.87050 0.80260 0.84805 0.77071 1.21680 1.23132 1.19538 1.18960 0.84755 0.94768 1.40127 0.89575 1.44351 1.08559 1.32979 1.47045 1.20966 0.92422 0.91227 0.93357 1.21989 0.99446 0.97477 0.98446 1.21343 0.96951 0.96853 0.98744 1.21991 0.98496 0.96549 0.97038 0.90108 1.21512 0.90149 0.92275 0.95915 1.46030 1.11799 1.34559 1.44586 1.18151 0.88124 0.80222 0.79171 1.90760 1.18866 1.70020 1.62095 1.19962 0.93704 0.98343 0.99853 1.21108 0.91594 0.99367 0.98628 1.20933 1.00313 0.94389 0.96021 1.18987 0.94053 0.97462 0.98376 1.21554 0.99559 0.93240 0.94133 1.21960 0.97825 0.99642 0.99647 1.23006 0.89018 0.96350 0.96249 1.68020 1.37426 1.04197 1.07781 1.18749 0.91181 0.94855 0.95775 1.21204 0.99925 0.91018 0.92362 1.21373 0.96900 0.91797 0.89154 0.92785 0.91893 0.95970 0.91921 0.92530 0.92675 0.92272 0.91323 0.91388 0.75867 0.84654 0.84262 0.84017 0.84319 0.82212 0.83168 0.95494 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.59 13.97 55.49 0.78 -25.81 16 2 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 3 Si 0.88 21.65 24.34 -169.99 -4.14 17.51 16 4 H -0.29 -6.68 6.70 56.52 0.38 -6.30 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.70 6.45 56.52 0.36 -6.34 16 7 C -0.26 -6.90 10.04 -15.06 -0.15 -7.05 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.61 -13.73 2.77 -172.31 -0.48 -14.20 16 10 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 11 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 12 C -0.10 -1.46 5.17 -26.69 -0.14 -1.60 16 13 C -0.12 -1.95 2.37 -90.50 -0.21 -2.16 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 15 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 16 N -0.72 -11.10 5.28 -61.23 -0.32 -11.42 16 17 C 0.56 9.04 7.77 -12.31 -0.10 8.94 16 18 O -0.54 -10.07 16.29 5.33 0.09 -9.98 16 19 C -0.11 -1.65 5.87 -105.01 -0.62 -2.26 16 20 C -0.09 -1.15 9.44 -39.57 -0.37 -1.52 16 21 C -0.10 -1.12 9.74 -39.58 -0.39 -1.50 16 22 C -0.09 -1.01 5.75 -106.72 -0.61 -1.63 16 23 C -0.06 -0.52 9.89 -39.21 -0.39 -0.90 16 24 C -0.17 -1.29 10.03 -39.75 -0.40 -1.69 16 25 C 0.13 1.15 11.15 -17.46 -0.19 0.95 16 26 N -0.47 -5.87 10.34 -10.98 -0.11 -5.99 16 27 C 0.11 1.54 6.60 -84.87 -0.56 0.98 16 28 C -0.03 -0.36 9.56 -38.69 -0.37 -0.73 16 29 C 0.13 2.73 3.27 -3.71 -0.01 2.72 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 6.02 5.68 -40.82 -0.23 5.79 16 40 H 0.14 1.67 6.34 -52.49 -0.33 1.33 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.15 2.17 7.60 -52.48 -0.40 1.77 16 46 H 0.03 0.57 6.98 -51.93 -0.36 0.21 16 47 H 0.07 1.49 3.71 -51.93 -0.19 1.30 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -32.98 374.78 -9.97 -42.95 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.62 Total: 5.82 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.81 Total: -4.52 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.14 Total: -57.43 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.98 -9.97 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.385 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds