Wall clock time and date at job start Tue Mar 31 2020 22:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00083 * 2 1 4 4 H 1.48500 * 109.47285 * 274.90598 * 3 2 1 5 5 H 1.48499 * 109.47374 * 34.90684 * 3 2 1 6 6 H 1.48503 * 109.47170 * 154.90481 * 3 2 1 7 7 C 1.38811 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 339.73537 * 7 2 1 9 9 N 1.36935 * 120.00389 * 159.73218 * 7 2 1 10 10 C 1.46933 * 120.63082 * 152.74431 * 9 7 2 11 11 C 1.53193 * 108.77316 * 126.43556 * 10 9 7 12 12 C 1.53044 * 109.31112 * 54.63718 * 11 10 9 13 13 C 1.53042 * 109.53852 * 298.63440 * 12 11 10 14 14 H 1.08996 * 109.49596 * 301.37869 * 13 12 11 15 15 C 1.53002 * 109.49671 * 181.31683 * 13 12 11 16 16 N 1.46504 * 109.47008 * 175.06250 * 15 13 12 17 17 C 1.34772 * 119.99837 * 180.02562 * 16 15 13 18 18 O 1.21546 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.47886 * 119.99858 * 179.97438 * 17 16 15 20 20 C 1.40575 * 119.70485 * 0.02562 * 19 17 16 21 21 C 1.35809 * 120.73430 * 179.74194 * 20 19 17 22 22 C 1.40543 * 119.98478 * 359.97438 * 21 20 19 23 23 C 1.40826 * 121.13710 * 179.97438 * 22 21 20 24 24 C 1.36549 * 118.20058 * 180.02562 * 23 22 21 25 25 C 1.39428 * 119.93989 * 359.97438 * 24 23 22 26 26 N 1.31017 * 121.71112 * 0.02562 * 25 24 23 27 27 C 1.33744 * 121.35308 * 0.02562 * 26 25 24 28 28 C 1.38399 * 119.70617 * 179.72681 * 19 17 16 29 29 C 1.46933 * 120.60670 * 332.77277 * 9 7 2 30 30 H 0.97002 * 119.99960 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58252 * 6.65072 * 10 9 7 32 32 H 1.09000 * 109.58408 * 246.22368 * 10 9 7 33 33 H 1.08996 * 109.50002 * 294.68840 * 11 10 9 34 34 H 1.08997 * 109.49328 * 174.58404 * 11 10 9 35 35 H 1.08998 * 109.45950 * 178.61324 * 12 11 10 36 36 H 1.08999 * 109.44676 * 58.64822 * 12 11 10 37 37 H 1.09004 * 109.46851 * 55.06186 * 15 13 12 38 38 H 1.09000 * 109.47156 * 295.06140 * 15 13 12 39 39 H 0.96997 * 119.99606 * 359.97438 * 16 15 13 40 40 H 1.08002 * 119.63181 * 359.71875 * 20 19 17 41 41 H 1.08002 * 120.00893 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.89565 * 0.02562 * 23 22 21 43 43 H 1.07999 * 120.03175 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.14521 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.23562 * 0.25520 * 28 19 17 46 46 H 1.08997 * 109.56311 * 113.75727 * 29 9 7 47 47 H 1.09000 * 109.61208 * 353.33543 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3940 2.1063 -1.3949 5 1 1.5034 2.6205 0.8012 6 1 3.5957 1.4124 0.5938 7 6 2.0102 -1.2021 -0.0005 8 1 1.5204 -2.1087 0.3230 9 7 3.3160 -1.2387 -0.4113 10 6 4.2337 -2.2653 0.1015 11 6 4.8807 -2.9856 -1.0857 12 6 5.5408 -1.9548 -2.0044 13 6 4.4780 -0.9943 -2.5430 14 1 3.7188 -1.5586 -3.0845 15 6 5.1338 0.0155 -3.4871 16 7 4.1009 0.8593 -4.0933 17 6 4.4473 1.8265 -4.9656 18 8 5.6165 1.9985 -5.2497 19 6 3.4047 2.6779 -5.5780 20 6 2.0542 2.4733 -5.2454 21 6 1.0802 3.2464 -5.7914 22 6 1.4178 4.2646 -6.6993 23 6 0.4275 5.0801 -7.2802 24 6 0.8228 6.0511 -8.1552 25 6 2.1758 6.2131 -8.4503 26 7 3.0947 5.4527 -7.9081 27 6 2.7749 4.4830 -7.0443 28 6 3.7676 3.6731 -6.4687 29 6 3.8257 -0.2515 -1.3729 30 1 -0.4850 0.8401 0.0004 31 1 3.6784 -2.9828 0.7056 32 1 5.0067 -1.7940 0.7085 33 1 4.1173 -3.5311 -1.6403 34 1 5.6345 -3.6833 -0.7209 35 1 6.0232 -2.4666 -2.8370 36 1 6.2868 -1.3928 -1.4424 37 1 5.6740 -0.5167 -4.2701 38 1 5.8292 0.6394 -2.9255 39 1 3.1678 0.7214 -3.8674 40 1 1.7884 1.6925 -4.5483 41 1 0.0463 3.0787 -5.5279 42 1 -0.6162 4.9413 -7.0402 43 1 0.0881 6.6936 -8.6176 44 1 2.4741 6.9854 -9.1438 45 1 4.8070 3.8258 -6.7196 46 1 4.5651 0.3843 -0.8859 47 1 3.0017 0.3593 -1.7416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602896612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:11 Heat of formation + Delta-G solvation = 16.208688 kcal Electronic energy + Delta-G solvation = -28895.864860 eV Core-core repulsion = 25042.799950 eV Total energy + Delta-G solvation = -3853.064910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01666 -40.93047 -39.61874 -37.83103 -36.36328 -34.87591 -34.54013 -33.02829 -32.35195 -31.47774 -31.12157 -27.60663 -27.14087 -25.52223 -24.94874 -24.12069 -23.22507 -22.44311 -22.09492 -20.92473 -19.58422 -18.83825 -18.61460 -17.97999 -17.44472 -17.09729 -16.87508 -16.54027 -15.94127 -15.56627 -15.54735 -15.36624 -15.27989 -15.03154 -14.94591 -14.77036 -14.66069 -14.47434 -13.97797 -13.93368 -13.69256 -13.37949 -13.10794 -13.00257 -12.80486 -12.61214 -12.58121 -12.20082 -12.10398 -11.70338 -11.62537 -11.59584 -11.45856 -11.27884 -11.13612 -10.66954 -10.55731 -10.29763 -9.89352 -9.41912 -8.92463 -8.16696 -5.47543 -0.86023 -0.44801 0.79391 1.24025 1.34675 1.39760 1.45679 1.97010 2.16803 2.37458 3.01487 3.03610 3.19385 3.31705 3.44830 3.54585 3.75610 3.79303 3.86717 3.90508 3.95550 3.98954 3.99256 4.19534 4.30394 4.44726 4.47913 4.51418 4.58663 4.66625 4.69904 4.74679 4.79831 4.84540 4.89793 4.97362 5.02031 5.07116 5.09764 5.15547 5.23132 5.26063 5.29843 5.33733 5.43778 5.58826 5.70400 5.87464 6.13571 6.29602 6.84197 6.91947 6.95724 7.62460 8.03897 9.03121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.003172 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.533045 B = 8826.351477 C =10293.876272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.024 4.024 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.315 1.315 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.055 0.945 9 N -0.620 5.620 10 C 0.137 3.863 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.106 4.106 14 H 0.077 0.923 15 C 0.129 3.871 16 N -0.717 5.717 17 C 0.556 3.444 18 O -0.571 6.571 19 C -0.127 4.127 20 C -0.108 4.108 21 C -0.088 4.088 22 C -0.100 4.100 23 C -0.061 4.061 24 C -0.157 4.157 25 C 0.130 3.870 26 N -0.506 5.506 27 C 0.094 3.906 28 C -0.040 4.040 29 C 0.131 3.869 30 H 0.262 0.738 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.407 0.593 40 H 0.137 0.863 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.194 0.806 45 H 0.135 0.865 46 H 0.023 0.977 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 7.932 -16.771 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.219 4.219 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.244 1.244 6 H -0.197 1.197 7 C -0.376 4.376 8 H 0.073 0.927 9 N -0.345 5.345 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.137 4.137 13 C -0.127 4.127 14 H 0.095 0.905 15 C 0.006 3.994 16 N -0.368 5.368 17 C 0.344 3.656 18 O -0.452 6.452 19 C -0.132 4.132 20 C -0.126 4.126 21 C -0.106 4.106 22 C -0.102 4.102 23 C -0.087 4.087 24 C -0.177 4.177 25 C -0.043 4.043 26 N -0.215 5.215 27 C -0.025 4.025 28 C -0.059 4.059 29 C 0.006 3.994 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.244 0.756 40 H 0.154 0.846 41 H 0.184 0.816 42 H 0.192 0.808 43 H 0.199 0.801 44 H 0.210 0.790 45 H 0.153 0.847 46 H 0.040 0.960 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.430 8.106 -17.041 19.384 hybrid contribution -1.138 0.609 0.882 1.563 sum 3.293 8.716 -16.159 18.653 Atomic orbital electron populations 1.69937 1.07024 1.27055 1.55663 1.25726 0.95653 0.99986 1.00523 0.86146 0.78541 0.81230 0.77835 1.19506 1.24386 1.19733 1.18903 0.86513 0.93569 1.38630 0.92686 1.44501 1.07746 1.34215 1.47998 1.21191 0.91971 0.90476 0.95122 1.21887 0.99847 0.97723 0.96856 1.21383 0.96316 0.96348 0.99646 1.21813 0.98915 0.96602 0.95336 0.90453 1.21498 0.89925 0.91960 0.96028 1.46066 1.12028 1.34413 1.44293 1.18440 0.88101 0.80184 0.78857 1.90727 1.20168 1.71002 1.63284 1.19848 0.93981 0.98660 1.00666 1.21143 0.91283 1.00438 0.99756 1.21265 1.01166 0.93333 0.94844 1.19253 0.94088 0.98136 0.98713 1.21988 1.00432 0.92600 0.93682 1.22439 0.97886 0.99069 0.98269 1.23751 0.89592 0.95660 0.95323 1.68028 1.39185 1.05253 1.08986 1.18836 0.91812 0.95367 0.96510 1.21160 0.99724 0.91881 0.93172 1.21375 0.96318 0.91653 0.90103 0.92869 0.92736 0.95142 0.92689 0.89254 0.89617 0.91586 0.89739 0.91841 0.75595 0.84566 0.81564 0.80800 0.80075 0.78955 0.84709 0.95951 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 13.97 21.65 0.30 -56.87 16 2 C -0.02 -1.33 5.24 84.86 0.44 -0.88 16 3 Si 0.93 45.47 24.34 68.60 1.67 47.14 16 4 H -0.27 -12.05 6.70 99.48 0.67 -11.38 16 5 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 6 H -0.27 -13.20 6.45 99.48 0.64 -12.55 16 7 C -0.25 -13.49 10.04 84.03 0.84 -12.65 16 8 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 9 N -0.62 -28.00 2.77 -699.08 -1.94 -29.94 16 10 C 0.14 5.01 6.52 86.36 0.56 5.58 16 11 C -0.12 -3.48 6.08 30.67 0.19 -3.29 16 12 C -0.10 -2.56 5.17 30.62 0.16 -2.40 16 13 C -0.11 -3.28 2.37 -10.72 -0.03 -3.31 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 C 0.13 3.77 5.07 86.38 0.44 4.20 16 16 N -0.72 -22.10 5.28 -465.92 -2.46 -24.56 16 17 C 0.56 18.51 7.77 86.80 0.67 19.19 16 18 O -0.57 -21.97 16.29 -3.86 -0.06 -22.03 16 19 C -0.13 -3.80 5.87 -20.11 -0.12 -3.92 16 20 C -0.11 -2.80 9.44 22.28 0.21 -2.59 16 21 C -0.09 -1.89 9.74 22.27 0.22 -1.68 16 22 C -0.10 -2.18 5.75 -21.23 -0.12 -2.30 16 23 C -0.06 -0.86 9.89 22.51 0.22 -0.64 16 24 C -0.16 -1.71 10.03 22.16 0.22 -1.48 16 25 C 0.13 1.98 11.15 85.10 0.95 2.93 16 26 N -0.51 -12.41 10.34 -188.65 -1.95 -14.36 16 27 C 0.09 2.53 6.60 40.25 0.27 2.80 16 28 C -0.04 -1.19 9.56 22.85 0.22 -0.97 16 29 C 0.13 5.24 3.27 86.36 0.28 5.52 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 31 H 0.05 2.04 7.93 -2.39 -0.02 2.03 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.41 12.16 5.68 -92.71 -0.53 11.64 16 40 H 0.14 3.39 6.34 -2.91 -0.02 3.37 16 41 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 42 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 44 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.14 4.27 7.60 -2.91 -0.02 4.25 16 46 H 0.02 0.93 6.98 -2.39 -0.02 0.91 16 47 H 0.05 2.20 3.71 -2.39 -0.01 2.19 16 Total: -1.00 -75.03 374.78 1.55 -73.48 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.36 Total: 23.03 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.63 Total: 4.11 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.05 Total: -125.73 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Total: -75.03 1.55 -73.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602896612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.685 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds