Wall clock time and date at job start Tue Mar 31 2020 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46974 * 299.99882 * 3 2 1 6 6 H 1.48503 * 109.47099 * 59.99896 * 3 2 1 7 7 C 1.38813 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99914 * 163.07090 * 7 2 1 9 9 N 1.36939 * 119.99988 * 343.06726 * 7 2 1 10 10 C 1.46930 * 120.63046 * 331.85126 * 9 7 2 11 11 C 1.53195 * 108.77424 * 233.58581 * 10 9 7 12 12 C 1.53037 * 109.31217 * 305.36875 * 11 10 9 13 13 N 1.46505 * 109.45822 * 181.38789 * 12 11 10 14 14 C 1.34777 * 119.99948 * 154.96815 * 13 12 11 15 15 O 1.21283 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99704 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47022 * 180.02562 * 16 14 13 18 18 C 1.39376 * 119.49403 * 270.23062 * 17 16 14 19 19 C 1.36173 * 121.08556 * 180.28087 * 18 17 16 20 20 C 1.40370 * 119.51799 * 359.75041 * 19 18 17 21 21 C 1.40431 * 122.08110 * 179.97438 * 20 19 18 22 22 N 1.31250 * 119.88123 * 180.02562 * 21 20 19 23 23 C 1.32608 * 122.77543 * 359.97438 * 22 21 20 24 24 C 1.36175 * 121.88012 * 0.02562 * 23 22 21 25 25 C 1.40695 * 118.66554 * 359.97438 * 24 23 22 26 26 C 1.36227 * 119.49027 * 90.00465 * 17 16 14 27 27 C 1.53041 * 109.53105 * 61.37142 * 12 11 10 28 28 C 1.46921 * 120.63001 * 151.82820 * 9 7 2 29 29 H 0.97000 * 120.00085 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58365 * 113.79818 * 10 9 7 31 31 H 1.09004 * 109.70233 * 353.44637 * 10 9 7 32 32 H 1.09002 * 109.49181 * 185.41440 * 11 10 9 33 33 H 1.08999 * 109.49345 * 65.31742 * 11 10 9 34 34 H 1.09003 * 109.45624 * 301.35618 * 12 11 10 35 35 H 0.96995 * 119.99643 * 334.97247 * 13 12 11 36 36 H 1.08999 * 109.47031 * 60.00883 * 16 14 13 37 37 H 1.08998 * 109.47600 * 300.00559 * 16 14 13 38 38 H 1.07999 * 119.45906 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.23992 * 179.77526 * 19 18 17 40 40 H 1.07995 * 120.06285 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.06119 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.67099 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.25806 * 359.97438 * 26 17 16 44 44 H 1.08998 * 109.49357 * 58.57692 * 27 12 11 45 45 H 1.09000 * 109.49483 * 178.67614 * 27 12 11 46 46 H 1.08995 * 109.58962 * 246.20376 * 28 9 7 47 47 H 1.09001 * 109.58492 * 6.48782 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3409 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8121 -4.7020 1.8328 13 7 1.0397 -5.6496 2.9267 14 6 0.8357 -6.9673 2.7302 15 8 0.4642 -7.3686 1.6477 16 6 1.0704 -7.9420 3.8553 17 6 0.7732 -9.3404 3.3786 18 6 -0.5180 -9.8493 3.5071 19 6 -0.8211 -11.1104 3.0925 20 6 0.1811 -11.9103 2.5213 21 6 -0.0717 -13.2180 2.0761 22 7 0.8980 -13.9281 1.5488 23 6 2.1331 -13.4655 1.4103 24 6 2.4803 -12.2111 1.8104 25 6 1.4941 -11.3889 2.3856 26 6 1.7696 -10.0859 2.8244 27 6 2.0676 -4.6177 0.9617 28 6 1.8138 -3.6527 -0.2007 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6770 -2.6410 0.7347 31 1 0.0967 -1.3358 1.6677 32 1 -0.3831 -3.3861 3.0509 33 1 1.3472 -2.9696 2.9973 34 1 -0.0280 -5.0417 1.2270 35 1 1.3371 -5.3286 3.7923 36 1 0.4158 -7.6961 4.6914 37 1 2.1098 -7.8816 4.1776 38 1 -1.2898 -9.2348 3.9465 39 1 -1.8254 -11.4923 3.2020 40 1 -1.0622 -13.6386 2.1673 41 1 2.8850 -14.1019 0.9676 42 1 3.4924 -11.8544 1.6886 43 1 2.7648 -9.6778 2.7270 44 1 2.9023 -4.2542 1.5610 45 1 2.3046 -5.6063 0.5686 46 1 1.0403 -4.0599 -0.8517 47 1 2.7332 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859264612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:36 Heat of formation + Delta-G solvation = 10.123657 kcal Electronic energy + Delta-G solvation = -28113.815013 eV Core-core repulsion = 24260.486236 eV Total energy + Delta-G solvation = -3853.328777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81648 -40.91259 -39.14843 -38.23999 -35.96630 -34.14248 -33.92917 -33.47426 -31.83072 -31.27042 -30.67781 -28.98334 -26.83089 -24.94262 -24.31405 -23.90198 -23.39877 -23.03421 -21.38093 -20.90952 -18.93690 -18.72194 -18.09484 -17.83843 -17.57057 -17.09704 -16.70458 -16.12416 -15.86479 -15.64084 -15.37173 -15.21688 -15.20932 -14.88195 -14.83612 -14.59537 -14.38425 -14.27199 -14.08657 -13.56636 -13.25186 -13.05286 -12.90606 -12.83792 -12.69186 -12.62678 -12.51868 -12.21506 -12.00132 -11.94952 -11.88421 -11.55433 -11.35932 -11.15782 -10.87726 -10.57893 -10.47457 -9.97189 -9.87578 -8.99908 -8.72241 -7.89213 -5.35201 -0.57015 -0.08785 0.98648 1.46851 1.48838 1.59576 1.71587 1.96623 2.40511 2.50839 3.13224 3.26838 3.49728 3.57261 3.63791 3.64696 3.86632 3.89231 3.93585 4.01123 4.08708 4.14045 4.25460 4.33287 4.38589 4.45637 4.51626 4.63030 4.63794 4.71489 4.80288 4.81832 4.84559 4.88652 5.03956 5.04529 5.13641 5.14215 5.15255 5.28719 5.39772 5.46420 5.54130 5.58940 5.63722 5.70596 5.71182 5.91178 6.37680 6.67274 7.00793 7.13152 7.36468 7.82450 8.35336 9.17958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.001946 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.580380 B =14388.295172 C =14774.520304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.177 3.823 11 C -0.128 4.128 12 C 0.163 3.837 13 N -0.711 5.711 14 C 0.510 3.490 15 O -0.583 6.583 16 C -0.098 4.098 17 C -0.048 4.048 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.131 4.131 21 C 0.140 3.860 22 N -0.518 5.518 23 C 0.059 3.941 24 C -0.160 4.160 25 C -0.044 4.044 26 C -0.115 4.115 27 C -0.122 4.122 28 C 0.143 3.857 29 H 0.251 0.749 30 H -0.008 1.008 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.416 0.584 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.171 0.829 42 H 0.156 0.844 43 H 0.140 0.860 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.003 0.997 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.429 -23.056 14.166 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.167 4.167 12 C 0.058 3.942 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.463 6.463 16 C -0.137 4.137 17 C -0.050 4.050 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.031 4.031 22 N -0.226 5.226 23 C -0.084 4.084 24 C -0.179 4.179 25 C -0.049 4.049 26 C -0.133 4.133 27 C -0.162 4.162 28 C 0.017 3.983 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.253 0.747 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.178 0.822 40 H 0.205 0.795 41 H 0.189 0.811 42 H 0.174 0.826 43 H 0.158 0.842 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.021 0.979 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.072 -24.077 13.059 27.469 hybrid contribution 0.431 2.140 -0.067 2.184 sum 2.503 -21.937 12.992 25.618 Atomic orbital electron populations 1.70194 1.06704 1.25907 1.55397 1.25841 0.96075 1.01598 1.01143 0.85180 0.78613 0.79668 0.76794 1.19041 1.22228 1.21304 1.19545 0.92852 0.85791 1.41021 0.91501 1.44363 1.35974 1.02168 1.50768 1.20579 0.87592 0.97887 0.88866 1.22242 1.02063 0.93648 0.98761 1.20579 0.96853 0.88525 0.88236 1.46053 1.68651 1.05981 1.15622 1.21140 0.76161 0.83193 0.89700 1.90739 1.47819 1.78942 1.28767 1.20836 1.07366 0.88644 0.96864 1.19423 0.93840 0.94859 0.96854 1.21114 0.96233 0.96112 0.99826 1.21268 0.99433 0.93800 0.96405 1.19314 0.94566 0.97018 1.02430 1.23651 0.99109 0.89224 0.91085 1.67452 1.01798 1.38451 1.14940 1.22534 0.93501 0.94627 0.97691 1.22168 1.00765 0.95197 0.99786 1.18467 0.93784 0.95079 0.97589 1.20997 1.00564 0.92899 0.98827 1.22147 0.98006 0.98376 0.97702 1.20967 0.97190 0.86123 0.94009 0.94004 0.99020 0.91858 0.90361 0.90949 0.92883 0.74699 0.84451 0.84908 0.83830 0.82192 0.79491 0.81148 0.82634 0.84228 0.91307 0.92433 0.97881 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 11.19 21.65 0.24 -54.70 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 3 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.26 -14.29 9.58 84.03 0.81 -13.49 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -30.55 2.99 -699.10 -2.09 -32.64 16 10 C 0.18 8.33 5.30 86.36 0.46 8.79 16 11 C -0.13 -4.32 5.55 30.67 0.17 -4.15 16 12 C 0.16 5.24 2.42 45.02 0.11 5.35 16 13 N -0.71 -16.01 5.08 -442.40 -2.25 -18.25 16 14 C 0.51 12.04 7.79 87.65 0.68 12.72 16 15 O -0.58 -20.06 15.70 -3.04 -0.05 -20.11 16 16 C -0.10 -1.32 5.80 29.10 0.17 -1.15 16 17 C -0.05 -0.87 4.34 -20.06 -0.09 -0.96 16 18 C -0.11 -1.95 9.58 22.06 0.21 -1.74 16 19 C -0.09 -1.47 9.81 22.31 0.22 -1.25 16 20 C -0.13 -2.61 5.74 -21.31 -0.12 -2.73 16 21 C 0.14 2.59 11.05 85.31 0.94 3.53 16 22 N -0.52 -11.14 10.30 -195.53 -2.01 -13.15 16 23 C 0.06 1.11 11.07 84.10 0.93 2.04 16 24 C -0.16 -2.95 9.88 22.39 0.22 -2.72 16 25 C -0.04 -0.93 5.75 -21.28 -0.12 -1.05 16 26 C -0.11 -2.24 9.42 22.28 0.21 -2.03 16 27 C -0.12 -4.23 5.65 30.67 0.17 -4.06 16 28 C 0.14 6.20 6.52 86.36 0.56 6.76 16 29 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.06 3.34 6.07 -2.38 -0.01 3.32 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 2.04 7.58 -2.39 -0.02 2.03 16 35 H 0.42 6.25 8.60 -92.71 -0.80 5.45 16 36 H 0.14 1.00 8.08 -2.39 -0.02 0.98 16 37 H 0.13 1.07 8.07 -2.39 -0.02 1.05 16 38 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 43 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 Total: -1.00 -76.46 386.03 2.00 -74.46 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.18 Total: 16.75 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.95 Total: 1.45 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -6.11 Total: -118.74 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.46 2.00 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859264612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.581 kcal (2) G-P(sol) polarization free energy of solvation -76.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds