Wall clock time and date at job start Tue Mar 31 2020 22:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99525 * 2 1 4 4 H 1.09008 * 109.47544 * 30.00200 * 3 2 1 5 5 C 1.53007 * 109.46952 * 150.00237 * 3 2 1 6 6 N 1.46501 * 109.46831 * 299.99926 * 5 3 2 7 7 C 1.34774 * 119.99773 * 180.27681 * 6 5 3 8 8 O 1.21588 * 119.99925 * 354.71183 * 7 6 5 9 9 N 1.34777 * 120.00110 * 174.70861 * 7 6 5 10 10 C 1.47075 * 120.88228 * 184.71307 * 9 7 6 11 11 C 1.53696 * 108.27743 * 128.75832 * 10 9 7 12 12 N 1.46907 * 109.25715 * 54.08217 * 11 10 9 13 13 C 1.46893 * 111.00111 * 172.61246 * 12 11 10 14 14 C 1.50705 * 109.47000 * 294.30190 * 13 12 11 15 15 H 1.07999 * 119.99895 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00035 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99617 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47212 * 89.99711 * 18 16 14 20 20 H 1.48502 * 109.46983 * 209.99802 * 18 16 14 21 21 H 1.48500 * 109.46888 * 329.99532 * 18 16 14 22 22 C 1.46906 * 111.26792 * 296.76259 * 12 11 10 23 23 C 1.47079 * 120.87849 * 4.99708 * 9 7 6 24 24 C 1.53002 * 109.47441 * 269.99616 * 3 2 1 25 25 F 1.39892 * 109.47184 * 300.00704 * 24 3 2 26 26 F 1.39902 * 109.46561 * 60.00738 * 24 3 2 27 27 F 1.39905 * 109.47103 * 179.97438 * 24 3 2 28 28 H 1.08994 * 109.46968 * 59.99687 * 1 2 3 29 29 H 1.08996 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47130 * 299.99678 * 1 2 3 31 31 H 1.09002 * 109.46924 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47174 * 59.99924 * 5 3 2 33 33 H 0.96995 * 120.00151 * 359.97438 * 6 5 3 34 34 H 1.08995 * 109.63517 * 248.52641 * 10 9 7 35 35 H 1.08998 * 109.62944 * 9.10924 * 10 9 7 36 36 H 1.09002 * 109.64610 * 294.08260 * 11 10 9 37 37 H 1.08998 * 109.42744 * 173.94944 * 11 10 9 38 38 H 1.09000 * 109.47498 * 54.30216 * 13 12 11 39 39 H 1.08999 * 109.46968 * 174.30711 * 13 12 11 40 40 H 0.97007 * 119.99556 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.48736 * 303.13882 * 22 12 11 42 42 H 1.08995 * 109.48907 * 183.06478 * 22 12 11 43 43 H 1.08993 * 109.63106 * 350.89867 * 23 9 7 44 44 H 1.09009 * 109.62958 * 111.47623 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7212 6 7 3.1603 0.8172 2.1024 7 6 4.2155 0.7089 2.9339 8 8 5.3420 0.8880 2.5130 9 7 4.0219 0.4021 4.2319 10 6 5.1475 0.3797 5.1783 11 6 4.7705 1.2383 6.3961 12 7 3.4905 0.7681 6.9428 13 6 3.1786 1.4446 8.2089 14 6 4.1904 1.0477 9.2530 15 1 4.9853 0.3613 9.0012 16 6 4.1006 1.5602 10.5299 17 7 3.1317 2.3948 10.8367 18 14 5.3551 1.0689 11.8238 19 1 6.4975 2.0170 11.7909 20 1 4.7212 1.1040 13.1663 21 1 5.8437 -0.3050 11.5429 22 6 2.4013 0.9395 5.9721 23 6 2.6804 0.0747 4.7383 24 6 2.2177 1.7714 -1.4425 25 9 3.0715 0.8809 -2.1020 26 9 0.9844 1.8101 -2.1019 27 9 2.7861 3.0498 -1.4424 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.8024 2.2591 0.7208 32 1 4.0242 0.5695 0.2074 33 1 2.2689 0.6039 2.4198 34 1 5.3397 -0.6454 5.4948 35 1 6.0364 0.7909 4.6999 36 1 4.6757 2.2813 6.0939 37 1 5.5458 1.1487 7.1569 38 1 3.2124 2.5241 8.0621 39 1 2.1817 1.1539 8.5401 40 1 3.0687 2.7557 11.7350 41 1 2.3396 1.9867 5.6759 42 1 1.4586 0.6331 6.4255 43 1 1.9374 0.2839 3.9688 44 1 2.6399 -0.9794 5.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868250681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:42 Heat of formation + Delta-G solvation = -204.429317 kcal Electronic energy + Delta-G solvation = -30485.795831 eV Core-core repulsion = 25638.164585 eV Total energy + Delta-G solvation = -4847.631246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.57645 -48.12688 -48.00948 -40.39272 -39.01300 -37.65855 -35.05343 -34.44294 -32.45791 -31.54712 -30.54936 -28.28402 -27.12401 -26.20889 -25.26171 -23.29320 -22.61284 -22.17039 -20.85315 -19.60741 -19.16117 -19.00182 -18.39974 -17.95009 -17.10747 -16.48653 -16.19945 -15.72601 -15.56619 -15.06255 -14.94038 -14.82809 -14.78719 -14.59943 -14.47211 -14.37282 -14.17403 -14.15700 -13.99732 -13.85218 -13.63110 -13.51303 -12.81803 -12.69002 -12.40934 -12.20870 -12.02177 -11.92985 -11.33022 -11.18456 -10.85844 -10.78176 -10.65541 -10.58276 -10.53884 -10.08011 -9.88875 -9.34890 -9.28472 -8.51455 -8.38873 -7.36475 -6.08740 -4.10497 1.99309 2.54488 2.71788 3.20907 3.22170 3.29078 3.35609 3.37716 3.39734 3.73120 3.88543 4.16362 4.19695 4.37190 4.70604 4.73050 4.79308 5.03948 5.15344 5.17087 5.24810 5.26402 5.32532 5.40918 5.60990 5.78940 5.87755 6.00046 6.11552 6.14223 6.21137 6.37249 6.52486 6.61794 6.95360 7.18304 7.24541 7.71552 7.89547 7.97801 8.08904 8.44496 8.57394 8.96887 9.54328 11.02107 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.002154 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.817226 B =12995.412810 C =13372.462068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.351 6.351 3 C 0.037 3.963 4 H 0.115 0.885 5 C 0.143 3.857 6 N -0.744 5.744 7 C 0.711 3.289 8 O -0.592 6.592 9 N -0.623 5.623 10 C 0.133 3.867 11 C 0.050 3.950 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.040 3.960 23 C 0.119 3.881 24 C 0.437 3.563 25 F -0.170 7.170 26 F -0.181 7.181 27 F -0.176 7.176 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.398 0.602 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.098 0.902 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -2.443 -23.945 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.269 6.269 3 C -0.024 4.024 4 H 0.133 0.867 5 C 0.017 3.983 6 N -0.403 5.403 7 C 0.412 3.588 8 O -0.471 6.471 9 N -0.360 5.360 10 C 0.010 3.990 11 C -0.079 4.079 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.005 4.005 24 C 0.382 3.618 25 F -0.152 7.152 26 F -0.162 7.162 27 F -0.157 7.157 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.116 0.884 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.534 -2.861 -24.020 25.057 hybrid contribution -0.360 0.924 0.489 1.106 sum -6.894 -1.937 -23.531 24.596 Atomic orbital electron populations 1.23224 0.79219 1.04528 1.01410 1.88158 1.21367 1.23327 1.94017 1.23580 0.99603 0.89243 0.90002 0.86742 1.21142 0.92559 1.02641 0.81935 1.44878 1.09975 1.74522 1.10921 1.15703 0.84158 0.78053 0.80861 1.90911 1.21844 1.58572 1.75735 1.47390 1.09924 1.72125 1.06522 1.21862 0.88037 1.01043 0.88017 1.22463 0.94580 0.95263 0.95561 1.62079 1.00493 1.59074 1.04368 1.19722 0.97535 0.91626 0.84178 1.21143 1.12198 1.26913 0.94556 0.91737 1.24993 0.95907 0.95102 0.98572 1.69957 1.31881 1.31480 1.20482 0.86489 0.81171 0.79035 0.80694 1.20693 1.21270 1.19700 1.22386 0.96696 0.97032 0.92815 1.21775 0.82689 1.00524 0.95502 1.21130 0.74336 0.75624 0.90748 1.93227 1.70794 1.67969 1.83188 1.93175 1.43319 1.96208 1.83537 1.93230 1.85146 1.40420 1.96924 0.92551 0.88113 0.92715 0.88824 0.89266 0.76456 0.91011 0.89263 0.95694 0.88414 0.99136 0.95078 0.92873 0.95556 0.90103 0.91426 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.70 101.05 1.08 1.14 16 2 O -0.35 -2.64 10.03 -35.23 -0.35 -3.00 16 3 C 0.04 0.26 2.26 -26.73 -0.06 0.20 16 4 H 0.11 0.53 7.79 -51.92 -0.40 0.12 16 5 C 0.14 1.34 5.13 -4.04 -0.02 1.32 16 6 N -0.74 -8.02 5.36 -65.22 -0.35 -8.37 16 7 C 0.71 10.58 8.31 -86.92 -0.72 9.86 16 8 O -0.59 -10.87 15.83 5.29 0.08 -10.79 16 9 N -0.62 -9.15 3.00 -177.92 -0.53 -9.68 16 10 C 0.13 2.14 6.61 -3.37 -0.02 2.12 16 11 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 12 N -0.53 -10.71 4.62 -235.46 -1.09 -11.80 16 13 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 14 C -0.51 -13.74 8.41 -34.44 -0.29 -14.03 16 15 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 18 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 23 C 0.12 1.49 6.59 -3.61 -0.02 1.47 16 24 C 0.44 3.52 2.85 37.16 0.11 3.63 16 25 F -0.17 -1.65 16.74 2.25 0.04 -1.61 16 26 F -0.18 -1.44 15.50 2.25 0.03 -1.40 16 27 F -0.18 -1.50 16.80 2.25 0.04 -1.46 16 28 H 0.06 0.26 6.49 -51.93 -0.34 -0.08 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.09 0.88 7.80 -51.93 -0.41 0.48 16 32 H 0.09 0.96 7.80 -51.93 -0.41 0.56 16 33 H 0.40 3.41 5.84 -40.82 -0.24 3.17 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.95 6.67 -51.93 -0.35 1.61 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.82 7.97 -51.93 -0.41 0.40 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.22 7.99 -51.93 -0.41 0.80 16 43 H 0.07 0.61 5.63 -51.93 -0.29 0.32 16 44 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -32.57 367.59 -7.08 -39.65 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.09 Total: -1.34 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -0.11 Total: 13.47 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -1.24 Total: -55.16 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.27 Total: -13.78 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.11 Total: -4.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -7.08 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868250681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.781 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds