Wall clock time and date at job start Tue Mar 31 2020 22:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99525 * 2 1 4 4 H 1.09008 * 109.47544 * 30.00200 * 3 2 1 5 5 C 1.53007 * 109.46952 * 150.00237 * 3 2 1 6 6 N 1.46501 * 109.46831 * 299.99926 * 5 3 2 7 7 C 1.34774 * 119.99773 * 180.27681 * 6 5 3 8 8 O 1.21588 * 119.99925 * 354.71183 * 7 6 5 9 9 N 1.34777 * 120.00110 * 174.70861 * 7 6 5 10 10 C 1.47075 * 120.88228 * 184.71307 * 9 7 6 11 11 C 1.53696 * 108.27743 * 128.75832 * 10 9 7 12 12 N 1.46907 * 109.25715 * 54.08217 * 11 10 9 13 13 C 1.46893 * 111.00111 * 172.61246 * 12 11 10 14 14 C 1.50705 * 109.47000 * 294.30190 * 13 12 11 15 15 H 1.07999 * 119.99895 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00035 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99617 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47212 * 89.99711 * 18 16 14 20 20 H 1.48502 * 109.46983 * 209.99802 * 18 16 14 21 21 H 1.48500 * 109.46888 * 329.99532 * 18 16 14 22 22 C 1.46906 * 111.26792 * 296.76259 * 12 11 10 23 23 C 1.47079 * 120.87849 * 4.99708 * 9 7 6 24 24 C 1.53002 * 109.47441 * 269.99616 * 3 2 1 25 25 F 1.39892 * 109.47184 * 300.00704 * 24 3 2 26 26 F 1.39902 * 109.46561 * 60.00738 * 24 3 2 27 27 F 1.39905 * 109.47103 * 179.97438 * 24 3 2 28 28 H 1.08994 * 109.46968 * 59.99687 * 1 2 3 29 29 H 1.08996 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47130 * 299.99678 * 1 2 3 31 31 H 1.09002 * 109.46924 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47174 * 59.99924 * 5 3 2 33 33 H 0.96995 * 120.00151 * 359.97438 * 6 5 3 34 34 H 1.08995 * 109.63517 * 248.52641 * 10 9 7 35 35 H 1.08998 * 109.62944 * 9.10924 * 10 9 7 36 36 H 1.09002 * 109.64610 * 294.08260 * 11 10 9 37 37 H 1.08998 * 109.42744 * 173.94944 * 11 10 9 38 38 H 1.09000 * 109.47498 * 54.30216 * 13 12 11 39 39 H 1.08999 * 109.46968 * 174.30711 * 13 12 11 40 40 H 0.97007 * 119.99556 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.48736 * 303.13882 * 22 12 11 42 42 H 1.08995 * 109.48907 * 183.06478 * 22 12 11 43 43 H 1.08993 * 109.63106 * 350.89867 * 23 9 7 44 44 H 1.09009 * 109.62958 * 111.47623 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2633 0.7212 6 7 3.1603 0.8172 2.1024 7 6 4.2155 0.7089 2.9339 8 8 5.3420 0.8880 2.5130 9 7 4.0219 0.4021 4.2319 10 6 5.1475 0.3797 5.1783 11 6 4.7705 1.2383 6.3961 12 7 3.4905 0.7681 6.9428 13 6 3.1786 1.4446 8.2089 14 6 4.1904 1.0477 9.2530 15 1 4.9853 0.3613 9.0012 16 6 4.1006 1.5602 10.5299 17 7 3.1317 2.3948 10.8367 18 14 5.3551 1.0689 11.8238 19 1 6.4975 2.0170 11.7909 20 1 4.7212 1.1040 13.1663 21 1 5.8437 -0.3050 11.5429 22 6 2.4013 0.9395 5.9721 23 6 2.6804 0.0747 4.7383 24 6 2.2177 1.7714 -1.4425 25 9 3.0715 0.8809 -2.1020 26 9 0.9844 1.8101 -2.1019 27 9 2.7861 3.0498 -1.4424 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.8024 2.2591 0.7208 32 1 4.0242 0.5695 0.2074 33 1 2.2689 0.6039 2.4198 34 1 5.3397 -0.6454 5.4948 35 1 6.0364 0.7909 4.6999 36 1 4.6757 2.2813 6.0939 37 1 5.5458 1.1487 7.1569 38 1 3.2124 2.5241 8.0621 39 1 2.1817 1.1539 8.5401 40 1 3.0687 2.7557 11.7350 41 1 2.3396 1.9867 5.6759 42 1 1.4586 0.6331 6.4255 43 1 1.9374 0.2839 3.9688 44 1 2.6399 -0.9794 5.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868250681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:41 Heat of formation + Delta-G solvation = -228.401700 kcal Electronic energy + Delta-G solvation = -30486.835352 eV Core-core repulsion = 25638.164585 eV Total energy + Delta-G solvation = -4848.670767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.22208 -48.75680 -48.68925 -41.52517 -39.69050 -38.97088 -36.02215 -35.94933 -34.37132 -32.48868 -31.68372 -29.91698 -27.51025 -27.48114 -26.52033 -24.56191 -23.92317 -23.26089 -22.22834 -20.73355 -19.79189 -19.71536 -19.31124 -18.81390 -18.47357 -17.68463 -17.33761 -16.79955 -16.61705 -16.34770 -15.97943 -15.68889 -15.64957 -15.46369 -15.42218 -15.30374 -15.25813 -15.12456 -14.94533 -14.83947 -14.80995 -14.67670 -14.08907 -13.89250 -13.48929 -13.27342 -13.09630 -12.87932 -12.72647 -12.57232 -12.40510 -12.35745 -12.29350 -12.14402 -11.73843 -11.40499 -11.19747 -11.03126 -10.60714 -10.37006 -9.62646 -9.01834 -8.19759 -6.29017 1.25011 1.43758 1.44045 1.55706 1.70931 2.03962 2.17438 2.41683 2.54603 2.68523 2.98036 3.13137 3.14499 3.25536 3.55747 3.67657 3.95861 4.07122 4.15724 4.27948 4.31764 4.40134 4.46697 4.51019 4.53784 4.61263 4.74139 4.87520 4.88507 4.97530 5.04406 5.18634 5.24559 5.26836 5.43769 5.65402 5.69802 5.86614 6.05404 6.27538 6.60823 6.85964 6.87223 7.40828 7.44682 8.91246 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.002154 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.817226 B =12995.412810 C =13372.462068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.368 6.368 3 C 0.048 3.952 4 H 0.146 0.854 5 C 0.141 3.859 6 N -0.725 5.725 7 C 0.708 3.292 8 O -0.630 6.630 9 N -0.626 5.626 10 C 0.145 3.855 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.209 3.791 14 C -0.523 4.523 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.037 3.963 23 C 0.127 3.873 24 C 0.436 3.564 25 F -0.183 7.183 26 F -0.179 7.179 27 F -0.180 7.180 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.011 0.989 37 H 0.079 0.921 38 H -0.041 1.041 39 H 0.012 0.988 40 H 0.264 0.736 41 H 0.021 0.979 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -3.379 -24.691 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.286 6.286 3 C -0.013 4.013 4 H 0.163 0.837 5 C 0.016 3.984 6 N -0.385 5.385 7 C 0.410 3.590 8 O -0.511 6.511 9 N -0.363 5.363 10 C 0.022 3.978 11 C -0.072 4.072 12 N -0.264 5.264 13 C 0.083 3.917 14 C -0.561 4.561 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.188 1.188 22 C -0.092 4.092 23 C 0.004 3.996 24 C 0.381 3.619 25 F -0.165 7.165 26 F -0.160 7.160 27 F -0.161 7.161 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.030 0.970 37 H 0.097 0.903 38 H -0.023 1.023 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.431 -3.815 -24.804 26.173 hybrid contribution -0.161 1.229 0.640 1.395 sum -7.592 -2.586 -24.164 25.460 Atomic orbital electron populations 1.23430 0.77676 1.05507 1.02407 1.88145 1.23043 1.23394 1.93983 1.23484 0.98799 0.90026 0.89025 0.83670 1.21164 0.94015 1.02137 0.81112 1.44685 1.09567 1.73331 1.10894 1.15835 0.84391 0.77763 0.81027 1.90889 1.23685 1.60153 1.76418 1.47386 1.10287 1.72166 1.06439 1.21603 0.88571 1.00607 0.87044 1.22370 0.93543 0.95155 0.96154 1.61991 1.02265 1.58137 1.04037 1.19361 0.96040 0.89889 0.86375 1.21482 1.12542 1.26696 0.95362 0.91675 1.25872 0.97801 0.95018 1.00857 1.70076 1.33681 1.32655 1.21091 0.85425 0.78648 0.79021 0.77797 1.20110 1.20902 1.18773 1.22536 0.95678 0.97701 0.93262 1.21866 0.82545 1.00170 0.94998 1.21328 0.74087 0.75277 0.91242 1.93202 1.71282 1.68406 1.83575 1.93177 1.43096 1.96180 1.83592 1.93223 1.85246 1.40686 1.96961 0.92537 0.87253 0.90738 0.88824 0.90816 0.74873 0.90301 0.89545 0.97032 0.90252 1.02349 0.97024 0.92738 0.96039 0.89154 0.87153 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 10.70 113.37 1.21 1.24 16 2 O -0.37 -4.55 10.03 -148.98 -1.49 -6.04 16 3 C 0.05 0.55 2.26 30.60 0.07 0.62 16 4 H 0.15 0.79 7.79 -2.38 -0.02 0.77 16 5 C 0.14 2.41 5.13 86.38 0.44 2.86 16 6 N -0.73 -13.79 5.36 -478.52 -2.57 -16.36 16 7 C 0.71 19.88 8.31 179.05 1.49 21.37 16 8 O -0.63 -22.71 15.83 -3.99 -0.06 -22.77 16 9 N -0.63 -17.24 3.00 -835.07 -2.51 -19.75 16 10 C 0.15 4.56 6.61 86.50 0.57 5.14 16 11 C 0.06 2.15 5.47 86.54 0.47 2.62 16 12 N -0.54 -21.59 4.62 -898.86 -4.15 -25.74 16 13 C 0.21 10.64 4.72 85.56 0.40 11.05 16 14 C -0.52 -28.58 8.41 25.60 0.22 -28.36 16 15 H 0.07 3.48 7.13 -2.91 -0.02 3.46 16 16 C 0.00 0.14 5.46 84.66 0.46 0.61 16 17 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 18 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 C 0.04 1.13 5.62 86.38 0.49 1.61 16 23 C 0.13 2.81 6.59 86.35 0.57 3.37 16 24 C 0.44 6.36 2.85 71.98 0.21 6.56 16 25 F -0.18 -3.41 16.74 44.97 0.75 -2.66 16 26 F -0.18 -2.52 15.50 44.97 0.70 -1.83 16 27 F -0.18 -2.84 16.80 44.97 0.76 -2.08 16 28 H 0.06 0.36 6.49 -2.39 -0.02 0.35 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.19 8.08 -2.39 -0.02 0.17 16 31 H 0.09 1.64 7.80 -2.39 -0.02 1.62 16 32 H 0.07 1.53 7.80 -2.39 -0.02 1.51 16 33 H 0.41 5.44 5.84 -92.71 -0.54 4.90 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.09 2.79 7.09 -2.39 -0.02 2.77 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 3.25 6.67 -2.39 -0.02 3.23 16 38 H -0.04 -2.32 8.12 -2.39 -0.02 -2.33 16 39 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 40 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 41 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.09 2.57 7.99 -2.39 -0.02 2.55 16 43 H 0.11 1.51 5.63 -2.39 -0.01 1.49 16 44 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -71.72 367.59 0.83 -70.89 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.50 Total: 6.97 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 6.60 Total: 28.69 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -8.94 Total: -116.57 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.56 Total: -28.81 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 2.21 Total: -6.56 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.72 0.83 -70.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868250681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.510 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds