Wall clock time and date at job start Tue Mar 31 2020 22:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39656 * 120.19115 * 162.66325 * 3 2 1 5 5 C 1.37792 * 119.77636 * 180.02562 * 4 3 2 6 6 C 1.38672 * 120.42438 * 359.97438 * 5 4 3 7 7 C 1.38383 * 120.08365 * 0.02562 * 6 5 4 8 8 C 1.38220 * 120.00642 * 359.97438 * 7 6 5 9 9 C 1.51401 * 109.73873 * 180.02562 * 7 6 5 10 10 C 1.54333 * 105.17535 * 342.77631 * 9 7 6 11 11 H 1.08993 * 110.81931 * 268.18721 * 10 9 7 12 12 N 1.46495 * 110.81838 * 144.64087 * 10 9 7 13 13 C 1.34779 * 120.00025 * 160.55383 * 12 10 9 14 14 O 1.21581 * 119.99933 * 355.02408 * 13 12 10 15 15 N 1.34778 * 119.99988 * 175.01474 * 13 12 10 16 16 C 1.46929 * 120.63243 * 5.23197 * 15 13 12 17 17 C 1.53189 * 108.77600 * 126.36373 * 16 15 13 18 18 C 1.53041 * 109.31052 * 54.63594 * 17 16 15 19 19 C 1.53038 * 109.54116 * 298.63321 * 18 17 16 20 20 H 1.08999 * 109.49667 * 301.41413 * 19 18 17 21 21 C 1.50700 * 109.49891 * 181.35010 * 19 18 17 22 22 H 1.07998 * 120.00245 * 359.97438 * 21 19 18 23 23 C 1.37873 * 119.99824 * 180.02562 * 21 19 18 24 24 N 1.31517 * 120.00294 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99793 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47209 * 59.99696 * 25 23 21 27 27 H 1.48503 * 109.46817 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47029 * 299.99226 * 25 23 21 29 29 C 1.46921 * 120.62912 * 184.94861 * 15 13 12 30 30 C 1.51422 * 130.21106 * 180.02562 * 6 5 4 31 31 H 1.07994 * 120.10658 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.78688 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.95293 * 179.97438 * 8 7 6 34 34 H 1.08998 * 110.30297 * 223.85293 * 9 7 6 35 35 H 1.09000 * 110.30402 * 101.70263 * 9 7 6 36 36 H 0.97001 * 120.00288 * 340.56228 * 12 10 9 37 37 H 1.08997 * 109.58917 * 246.15509 * 16 15 13 38 38 H 1.09003 * 109.58643 * 6.43736 * 16 15 13 39 39 H 1.09005 * 109.49784 * 174.58892 * 17 16 15 40 40 H 1.09001 * 109.49953 * 294.65637 * 17 16 15 41 41 H 1.09004 * 109.46121 * 58.65427 * 18 17 16 42 42 H 1.08998 * 109.45829 * 178.62239 * 18 17 16 43 43 H 0.97003 * 120.00307 * 180.02562 * 24 23 21 44 44 H 1.08995 * 109.58763 * 353.42302 * 29 15 13 45 45 H 1.09008 * 109.58807 * 113.84733 * 29 15 13 46 46 H 1.09001 * 110.29938 * 78.27538 * 30 6 5 47 47 H 1.09005 * 110.30013 * 316.12881 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 1.1532 -0.3597 5 6 4.6477 1.1442 -0.3572 6 6 5.3418 -0.0018 0.0006 7 6 4.6523 -1.1472 0.3580 8 6 3.2701 -1.1499 0.3593 9 6 5.6332 -2.2479 0.7024 10 6 6.9789 -1.7932 0.0990 11 1 7.1015 -2.1824 -0.9116 12 7 8.0967 -2.1994 0.9543 13 6 9.3448 -2.2590 0.4491 14 8 9.5307 -2.0639 -0.7365 15 7 10.3869 -2.5346 1.2582 16 6 10.1678 -2.8847 2.6682 17 6 10.8707 -4.2139 2.9612 18 6 12.3442 -4.1060 2.5620 19 6 12.4487 -3.8249 1.0613 20 1 11.9591 -4.6252 0.5064 21 6 13.9003 -3.7518 0.6631 22 1 14.6717 -3.8913 1.4059 23 6 14.2435 -3.5057 -0.6493 24 7 13.3041 -3.3353 -1.5539 25 14 16.0429 -3.4157 -1.1430 26 1 16.7059 -4.7082 -0.8351 27 1 16.1435 -3.1428 -2.5993 28 1 16.7095 -2.3249 -0.3874 29 6 11.7632 -2.4968 0.7453 30 6 6.8322 -0.2571 0.0805 31 1 2.7343 2.0486 -0.6388 32 1 5.1906 2.0353 -0.6358 33 1 2.7329 -2.0444 0.6380 34 1 5.3170 -3.1899 0.2546 35 1 5.7197 -2.3526 1.7839 36 1 7.9387 -2.4256 1.8843 37 1 10.5811 -2.1042 3.3070 38 1 9.0991 -2.9844 2.8581 39 1 10.7975 -4.4373 4.0256 40 1 10.3957 -5.0106 2.3888 41 1 12.8122 -3.2930 3.1172 42 1 12.8522 -5.0425 2.7922 43 1 13.5456 -3.1625 -2.4774 44 1 11.7470 -2.3431 -0.3336 45 1 12.3094 -1.6839 1.2241 46 1 7.2410 0.1726 0.9950 47 1 7.3347 0.1604 -0.7920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869193866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:44 Heat of formation + Delta-G solvation = 25.741463 kcal Electronic energy + Delta-G solvation = -28371.395479 eV Core-core repulsion = 24518.743942 eV Total energy + Delta-G solvation = -3852.651538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77888 -39.62677 -37.59024 -36.79256 -35.74808 -33.65399 -32.75099 -32.00071 -31.67282 -29.80262 -28.66497 -27.84809 -25.08870 -24.61987 -23.13901 -22.29132 -21.85317 -21.15828 -20.10266 -19.04572 -18.43151 -17.52780 -16.54840 -16.20259 -16.12417 -15.80126 -14.85843 -14.65633 -14.55649 -14.47666 -14.16765 -13.92042 -13.74122 -13.63991 -13.43066 -13.14557 -13.00382 -12.96527 -12.86025 -12.65019 -12.49780 -12.24431 -11.94079 -11.83317 -11.57703 -11.32228 -11.20764 -10.97956 -10.89808 -10.53273 -10.42352 -10.23492 -9.88726 -9.48870 -9.29405 -9.10111 -8.96956 -8.94005 -8.84649 -8.41850 -7.68194 -5.97997 -4.07362 0.39306 0.91736 2.30591 2.56992 3.08305 3.32647 3.38490 3.39582 3.45272 3.48272 3.74172 4.13277 4.17871 4.40483 4.46244 4.50763 4.69060 4.87144 4.88412 4.96546 5.22004 5.24544 5.26233 5.31571 5.45469 5.46908 5.55114 5.58763 5.63706 5.79859 5.87095 5.87437 5.92134 5.99243 6.13719 6.19829 6.29478 6.40929 6.57133 6.64861 6.74847 6.78924 6.97714 7.02010 7.12565 7.33315 7.47243 7.73632 7.92543 8.06238 8.40953 8.53835 8.96030 9.20527 9.58156 11.06771 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.002125 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.085511 B =13170.894664 C =13926.993807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.259 3.741 3 C -0.037 4.037 4 C -0.068 4.068 5 C -0.108 4.108 6 C -0.052 4.052 7 C -0.096 4.096 8 C -0.054 4.054 9 C -0.088 4.088 10 C 0.169 3.831 11 H 0.104 0.896 12 N -0.750 5.750 13 C 0.701 3.299 14 O -0.579 6.579 15 N -0.622 5.622 16 C 0.116 3.884 17 C -0.134 4.134 18 C -0.110 4.110 19 C 0.039 3.961 20 H 0.028 0.972 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.878 5.878 25 Si 0.892 3.108 26 H -0.278 1.278 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.128 3.872 30 C -0.104 4.104 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.392 0.608 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.124 0.876 45 H 0.039 0.961 46 H 0.091 0.909 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 6.000 7.720 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.056 4.056 3 C -0.041 4.041 4 C -0.088 4.088 5 C -0.126 4.126 6 C -0.053 4.053 7 C -0.097 4.097 8 C -0.075 4.075 9 C -0.125 4.125 10 C 0.062 3.938 11 H 0.122 0.878 12 N -0.409 5.409 13 C 0.402 3.598 14 O -0.456 6.456 15 N -0.358 5.358 16 C -0.009 4.009 17 C -0.172 4.172 18 C -0.148 4.148 19 C 0.020 3.980 20 H 0.046 0.954 21 C -0.561 4.561 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.516 5.516 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 C 0.008 3.992 30 C -0.142 4.142 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.228 0.772 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.142 0.858 45 H 0.057 0.943 46 H 0.109 0.891 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.839 6.189 6.624 20.906 hybrid contribution 1.254 -0.021 0.257 1.280 sum -17.585 6.168 6.881 19.865 Atomic orbital electron populations 1.81267 1.12083 1.07456 1.09025 1.25687 0.92607 0.93732 0.93562 1.15770 0.84156 0.96083 1.08048 1.21052 0.93917 0.96696 0.97140 1.20606 0.93168 0.98172 1.00690 1.20929 0.96456 0.93245 0.94652 1.20334 0.92773 0.96356 1.00205 1.20547 0.92782 0.96863 0.97280 1.21313 0.92188 0.97114 1.01906 1.21235 0.84001 0.92599 0.95949 0.87824 1.45331 1.06159 1.75441 1.13935 1.15945 0.80156 0.78413 0.85264 1.90939 1.83662 1.57178 1.13777 1.47801 1.07590 1.71325 1.09091 1.21492 0.98529 0.97247 0.83602 1.21946 0.98677 0.96697 0.99877 1.21613 0.92758 1.00486 0.99897 1.18905 0.95793 0.93620 0.89710 0.95359 1.21027 0.91233 1.50099 0.93717 0.92466 1.25056 0.97281 0.94992 0.96704 1.69884 1.31852 1.47466 1.02348 0.86667 0.85432 0.78498 0.77445 1.20328 1.21279 1.20274 1.22107 0.75096 0.98756 1.03260 1.21702 0.90679 0.97707 1.04123 0.84824 0.84868 0.85094 0.89389 0.89299 0.77173 0.92157 0.92175 0.92345 0.92175 0.93213 0.93081 0.92602 0.85821 0.94271 0.89101 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.89 18.54 41.84 0.78 -4.12 16 2 C 0.26 2.39 15.33 -22.47 -0.34 2.05 16 3 C -0.04 -0.28 5.73 -106.97 -0.61 -0.89 16 4 C -0.07 -0.44 9.76 -39.22 -0.38 -0.83 16 5 C -0.11 -0.76 10.02 -39.58 -0.40 -1.15 16 6 C -0.05 -0.43 6.14 -104.05 -0.64 -1.07 16 7 C -0.10 -0.74 6.12 -104.23 -0.64 -1.38 16 8 C -0.05 -0.38 9.75 -39.12 -0.38 -0.77 16 9 C -0.09 -0.66 6.47 -26.84 -0.17 -0.83 16 10 C 0.17 1.83 3.39 -66.55 -0.23 1.61 16 11 H 0.10 1.37 7.65 -51.93 -0.40 0.97 16 12 N -0.75 -9.55 5.08 -57.32 -0.29 -9.84 16 13 C 0.70 13.08 8.29 -86.92 -0.72 12.36 16 14 O -0.58 -13.58 15.47 5.29 0.08 -13.49 16 15 N -0.62 -11.71 2.98 -178.76 -0.53 -12.24 16 16 C 0.12 1.63 6.39 -3.71 -0.02 1.61 16 17 C -0.13 -2.01 6.08 -26.61 -0.16 -2.17 16 18 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 19 C 0.04 0.94 2.24 -91.87 -0.21 0.73 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.52 -13.88 8.57 -34.44 -0.30 -14.17 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.28 11.39 55.43 0.63 -24.64 16 25 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 C 0.13 3.01 5.39 -3.93 -0.02 2.99 16 30 C -0.10 -1.02 6.49 -26.84 -0.17 -1.19 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.54 7.78 -51.93 -0.40 0.14 16 36 H 0.39 3.88 5.86 -40.82 -0.24 3.64 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.63 5.64 -51.93 -0.29 0.34 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 3.43 5.10 -51.93 -0.27 3.17 16 45 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 46 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -32.52 384.50 -10.82 -43.34 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.63 Total: 2.98 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -5.63 Total: -3.73 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.58 Total: -50.85 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.52 -10.82 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869193866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.084 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds