Wall clock time and date at job start Tue Mar 31 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39656 * 120.19115 * 162.66325 * 3 2 1 5 5 C 1.37792 * 119.77636 * 180.02562 * 4 3 2 6 6 C 1.38672 * 120.42438 * 359.97438 * 5 4 3 7 7 C 1.38383 * 120.08365 * 0.02562 * 6 5 4 8 8 C 1.38220 * 120.00642 * 359.97438 * 7 6 5 9 9 C 1.51401 * 109.73873 * 180.02562 * 7 6 5 10 10 C 1.54333 * 105.17535 * 342.77631 * 9 7 6 11 11 H 1.08993 * 110.81931 * 268.18721 * 10 9 7 12 12 N 1.46495 * 110.81838 * 144.64087 * 10 9 7 13 13 C 1.34779 * 120.00025 * 160.55383 * 12 10 9 14 14 O 1.21581 * 119.99933 * 355.02408 * 13 12 10 15 15 N 1.34778 * 119.99988 * 175.01474 * 13 12 10 16 16 C 1.46929 * 120.63243 * 5.23197 * 15 13 12 17 17 C 1.53189 * 108.77600 * 126.36373 * 16 15 13 18 18 C 1.53041 * 109.31052 * 54.63594 * 17 16 15 19 19 C 1.53038 * 109.54116 * 298.63321 * 18 17 16 20 20 H 1.08999 * 109.49667 * 301.41413 * 19 18 17 21 21 C 1.50700 * 109.49891 * 181.35010 * 19 18 17 22 22 H 1.07998 * 120.00245 * 359.97438 * 21 19 18 23 23 C 1.37873 * 119.99824 * 180.02562 * 21 19 18 24 24 N 1.31517 * 120.00294 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99793 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47209 * 59.99696 * 25 23 21 27 27 H 1.48503 * 109.46817 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47029 * 299.99226 * 25 23 21 29 29 C 1.46921 * 120.62912 * 184.94861 * 15 13 12 30 30 C 1.51422 * 130.21106 * 180.02562 * 6 5 4 31 31 H 1.07994 * 120.10658 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.78688 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.95293 * 179.97438 * 8 7 6 34 34 H 1.08998 * 110.30297 * 223.85293 * 9 7 6 35 35 H 1.09000 * 110.30402 * 101.70263 * 9 7 6 36 36 H 0.97001 * 120.00288 * 340.56228 * 12 10 9 37 37 H 1.08997 * 109.58917 * 246.15509 * 16 15 13 38 38 H 1.09003 * 109.58643 * 6.43736 * 16 15 13 39 39 H 1.09005 * 109.49784 * 174.58892 * 17 16 15 40 40 H 1.09001 * 109.49953 * 294.65637 * 17 16 15 41 41 H 1.09004 * 109.46121 * 58.65427 * 18 17 16 42 42 H 1.08998 * 109.45829 * 178.62239 * 18 17 16 43 43 H 0.97003 * 120.00307 * 180.02562 * 24 23 21 44 44 H 1.08995 * 109.58763 * 353.42302 * 29 15 13 45 45 H 1.09008 * 109.58807 * 113.84733 * 29 15 13 46 46 H 1.09001 * 110.29938 * 78.27538 * 30 6 5 47 47 H 1.09005 * 110.30013 * 316.12881 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 1.1532 -0.3597 5 6 4.6477 1.1442 -0.3572 6 6 5.3418 -0.0018 0.0006 7 6 4.6523 -1.1472 0.3580 8 6 3.2701 -1.1499 0.3593 9 6 5.6332 -2.2479 0.7024 10 6 6.9789 -1.7932 0.0990 11 1 7.1015 -2.1824 -0.9116 12 7 8.0967 -2.1994 0.9543 13 6 9.3448 -2.2590 0.4491 14 8 9.5307 -2.0639 -0.7365 15 7 10.3869 -2.5346 1.2582 16 6 10.1678 -2.8847 2.6682 17 6 10.8707 -4.2139 2.9612 18 6 12.3442 -4.1060 2.5620 19 6 12.4487 -3.8249 1.0613 20 1 11.9591 -4.6252 0.5064 21 6 13.9003 -3.7518 0.6631 22 1 14.6717 -3.8913 1.4059 23 6 14.2435 -3.5057 -0.6493 24 7 13.3041 -3.3353 -1.5539 25 14 16.0429 -3.4157 -1.1430 26 1 16.7059 -4.7082 -0.8351 27 1 16.1435 -3.1428 -2.5993 28 1 16.7095 -2.3249 -0.3874 29 6 11.7632 -2.4968 0.7453 30 6 6.8322 -0.2571 0.0805 31 1 2.7343 2.0486 -0.6388 32 1 5.1906 2.0353 -0.6358 33 1 2.7329 -2.0444 0.6380 34 1 5.3170 -3.1899 0.2546 35 1 5.7197 -2.3526 1.7839 36 1 7.9387 -2.4256 1.8843 37 1 10.5811 -2.1042 3.3070 38 1 9.0991 -2.9844 2.8581 39 1 10.7975 -4.4373 4.0256 40 1 10.3957 -5.0106 2.3888 41 1 12.8122 -3.2930 3.1172 42 1 12.8522 -5.0425 2.7922 43 1 13.5456 -3.1625 -2.4774 44 1 11.7470 -2.3431 -0.3336 45 1 12.3094 -1.6839 1.2241 46 1 7.2410 0.1726 0.9950 47 1 7.3347 0.1604 -0.7920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869193866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:43 Heat of formation + Delta-G solvation = 7.391125 kcal Electronic energy + Delta-G solvation = -28372.191210 eV Core-core repulsion = 24518.743942 eV Total energy + Delta-G solvation = -3853.447268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63815 -40.83634 -38.68468 -37.96008 -36.71278 -35.35344 -34.12285 -33.13750 -32.58453 -31.46001 -29.54112 -28.51105 -26.97906 -26.02732 -23.97289 -23.38310 -22.93004 -22.07370 -21.46939 -20.42996 -19.28835 -18.85802 -18.16299 -17.50815 -16.93976 -16.72331 -16.46017 -15.99905 -15.72958 -15.23219 -15.19444 -15.10773 -15.02377 -14.64003 -14.43319 -14.29185 -14.20709 -13.90492 -13.80634 -13.72686 -13.70793 -13.48574 -13.31413 -12.82835 -12.66578 -12.59638 -12.36394 -12.24125 -12.22065 -12.02916 -11.81458 -11.77998 -11.57916 -11.15642 -10.90221 -10.78689 -10.47202 -10.12609 -9.84267 -9.53571 -9.20937 -8.06340 -6.23750 -0.22277 0.38135 1.43211 1.44337 1.52695 1.59225 1.82134 1.90089 2.30238 2.44610 2.79509 2.86861 3.06170 3.22674 3.45111 3.62727 3.96917 4.00574 4.10758 4.16391 4.18927 4.23781 4.33352 4.35408 4.65256 4.65977 4.66579 4.77347 4.78384 4.86714 4.89188 4.90679 5.00309 5.11648 5.14493 5.16212 5.23343 5.31394 5.32053 5.33436 5.38834 5.60012 5.60032 5.68046 5.71005 5.83845 5.95328 6.03690 6.23560 6.41033 6.43198 6.89641 7.21379 7.46038 7.76911 8.96183 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.002125 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.085511 B =13170.894664 C =13926.993807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.283 3.717 3 C -0.043 4.043 4 C -0.060 4.060 5 C -0.110 4.110 6 C -0.061 4.061 7 C -0.098 4.098 8 C -0.048 4.048 9 C -0.075 4.075 10 C 0.160 3.840 11 H 0.073 0.927 12 N -0.723 5.723 13 C 0.695 3.305 14 O -0.637 6.637 15 N -0.628 5.628 16 C 0.110 3.890 17 C -0.126 4.126 18 C -0.105 4.105 19 C 0.037 3.963 20 H -0.016 1.016 21 C -0.536 4.536 22 H 0.061 0.939 23 C 0.009 3.991 24 N -0.913 5.913 25 Si 0.956 3.044 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.267 1.267 29 C 0.144 3.856 30 C -0.098 4.098 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.095 0.905 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 6.221 10.572 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.031 4.031 3 C -0.047 4.047 4 C -0.080 4.080 5 C -0.128 4.128 6 C -0.062 4.062 7 C -0.099 4.099 8 C -0.069 4.069 9 C -0.112 4.112 10 C 0.054 3.946 11 H 0.091 0.909 12 N -0.383 5.383 13 C 0.397 3.603 14 O -0.518 6.518 15 N -0.363 5.363 16 C -0.012 4.012 17 C -0.164 4.164 18 C -0.143 4.143 19 C 0.018 3.982 20 H 0.002 0.998 21 C -0.575 4.575 22 H 0.079 0.921 23 C -0.190 4.190 24 N -0.551 5.551 25 Si 0.781 3.219 26 H -0.195 1.195 27 H -0.216 1.216 28 H -0.192 1.192 29 C 0.021 3.979 30 C -0.136 4.136 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.250 0.750 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.114 0.886 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.062 6.399 9.557 23.125 hybrid contribution 1.623 -0.084 -0.637 1.745 sum -18.440 6.315 8.920 21.435 Atomic orbital electron populations 1.81296 1.13396 1.08939 1.10752 1.25832 0.92657 0.92386 0.92208 1.15835 0.83229 0.96790 1.08807 1.21256 0.93696 0.97101 0.95991 1.20773 0.93426 0.98324 1.00267 1.20855 0.95331 0.94269 0.95754 1.20308 0.93010 0.96018 1.00538 1.20667 0.92443 0.97325 0.96437 1.21224 0.89491 0.97303 1.03192 1.21332 0.84985 0.93569 0.94680 0.90886 1.45031 1.04336 1.73999 1.14886 1.16176 0.81624 0.78035 0.84482 1.90902 1.84787 1.59555 1.16560 1.47674 1.05899 1.71537 1.11228 1.21867 1.01485 0.97252 0.80605 1.21909 0.95275 0.96890 1.02374 1.21503 0.96268 1.00544 0.95968 1.18843 0.94124 0.92390 0.92881 0.99813 1.21493 0.92875 1.49206 0.93916 0.92061 1.25890 1.01384 0.94839 0.96908 1.70094 1.33905 1.48835 1.02310 0.85649 0.80492 0.78938 0.76814 1.19451 1.21594 1.19160 1.21449 0.77906 0.98045 1.00543 1.21540 0.92042 0.96656 1.03409 0.82883 0.83496 0.83331 0.88352 0.86801 0.74971 0.90211 0.87753 0.87806 0.93254 0.92424 0.93283 0.93215 0.90609 0.94824 0.88633 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.34 18.54 19.00 0.35 -9.99 16 2 C 0.28 4.73 15.33 88.33 1.35 6.09 16 3 C -0.04 -0.54 5.73 -21.39 -0.12 -0.67 16 4 C -0.06 -0.64 9.76 22.51 0.22 -0.42 16 5 C -0.11 -1.32 10.02 22.27 0.22 -1.09 16 6 C -0.06 -0.91 6.14 -19.50 -0.12 -1.03 16 7 C -0.10 -1.27 6.12 -19.61 -0.12 -1.39 16 8 C -0.05 -0.55 9.75 22.57 0.22 -0.33 16 9 C -0.07 -0.92 6.47 30.52 0.20 -0.72 16 10 C 0.16 3.38 3.39 45.89 0.16 3.54 16 11 H 0.07 2.03 7.65 -2.39 -0.02 2.01 16 12 N -0.72 -17.48 5.08 -453.54 -2.30 -19.78 16 13 C 0.70 26.43 8.29 179.05 1.48 27.91 16 14 O -0.64 -31.78 15.47 -3.97 -0.06 -31.84 16 15 N -0.63 -23.63 2.98 -837.75 -2.50 -26.13 16 16 C 0.11 2.75 6.39 86.36 0.55 3.30 16 17 C -0.13 -3.42 6.08 30.67 0.19 -3.23 16 18 C -0.11 -3.90 5.11 30.62 0.16 -3.75 16 19 C 0.04 1.84 2.24 -11.61 -0.03 1.81 16 20 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 21 C -0.54 -29.29 8.57 25.60 0.22 -29.07 16 22 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 23 C 0.01 0.52 5.30 84.65 0.45 0.97 16 24 N -0.91 -55.46 11.39 21.45 0.24 -55.22 16 25 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 C 0.14 7.01 5.39 86.22 0.46 7.48 16 30 C -0.10 -1.88 6.49 30.52 0.20 -1.68 16 31 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 32 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 0.87 7.78 -2.39 -0.02 0.85 16 36 H 0.41 6.68 5.86 -92.71 -0.54 6.14 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.10 1.68 5.64 -2.39 -0.01 1.67 16 39 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.08 4.49 5.10 -2.39 -0.01 4.48 16 45 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.10 1.72 8.08 -2.39 -0.02 1.70 16 47 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -78.00 384.50 3.91 -74.08 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.46 Total: 15.11 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.69 Total: 7.72 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.20 Total: -111.12 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.06 Total: -31.84 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -78.00 3.91 -74.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869193866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.473 kcal (2) G-P(sol) polarization free energy of solvation -77.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds