Wall clock time and date at job start Tue Mar 31 2020 22:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39652 * 120.18904 * 208.79447 * 3 2 1 5 5 C 1.37793 * 119.77542 * 180.02562 * 4 3 2 6 6 C 1.38673 * 120.42397 * 0.02562 * 5 4 3 7 7 C 1.38378 * 120.08587 * 359.97438 * 6 5 4 8 8 C 1.38232 * 120.00438 * 0.02562 * 7 6 5 9 9 C 1.51395 * 109.74064 * 180.02562 * 7 6 5 10 10 C 1.54327 * 105.17708 * 17.21547 * 9 7 6 11 11 H 1.09002 * 110.81472 * 92.01303 * 10 9 7 12 12 N 1.46495 * 110.82352 * 215.35676 * 10 9 7 13 13 C 1.34774 * 120.00127 * 202.30602 * 12 10 9 14 14 O 1.21595 * 120.00086 * 355.01209 * 13 12 10 15 15 N 1.34775 * 120.00201 * 175.01232 * 13 12 10 16 16 C 1.46929 * 120.63109 * 4.94016 * 15 13 12 17 17 C 1.53630 * 108.54377 * 126.36621 * 16 15 13 18 18 C 1.53041 * 109.23678 * 54.86245 * 17 16 15 19 19 C 1.53038 * 109.53746 * 298.50735 * 18 17 16 20 20 H 1.09004 * 109.50301 * 301.41449 * 19 18 17 21 21 C 1.50696 * 109.52653 * 181.33643 * 19 18 17 22 22 H 1.08004 * 119.99826 * 0.14695 * 21 19 18 23 23 C 1.37875 * 120.00480 * 180.14688 * 21 19 18 24 24 N 1.31515 * 119.99887 * 359.97438 * 23 21 19 25 25 Si 1.86799 * 120.00278 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47070 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47567 * 119.99705 * 25 23 21 28 28 H 1.48503 * 109.46992 * 239.99904 * 25 23 21 29 29 C 1.46931 * 120.63489 * 185.22444 * 15 13 12 30 30 C 1.51725 * 130.13180 * 180.17204 * 6 5 4 31 31 H 1.07995 * 120.11590 * 0.04330 * 4 3 2 32 32 H 1.07999 * 119.79050 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.95068 * 180.02562 * 8 7 6 34 34 H 1.09006 * 110.30184 * 258.29322 * 9 7 6 35 35 H 1.09000 * 110.38561 * 136.19460 * 9 7 6 36 36 H 0.96996 * 120.00129 * 22.30736 * 12 10 9 37 37 H 1.08996 * 109.58983 * 246.20503 * 16 15 13 38 38 H 1.09002 * 109.58335 * 6.62831 * 16 15 13 39 39 H 1.08997 * 109.63214 * 294.87299 * 17 16 15 40 40 H 1.09000 * 109.45667 * 174.74322 * 17 16 15 41 41 H 1.08998 * 109.45669 * 178.48996 * 18 17 16 42 42 H 1.08990 * 109.46252 * 58.52850 * 18 17 16 43 43 H 0.97001 * 120.00050 * 180.02562 * 24 23 21 44 44 H 1.09008 * 109.58188 * 353.36960 * 29 15 13 45 45 H 1.08995 * 109.58941 * 113.65125 * 29 15 13 46 46 H 1.09000 * 110.49052 * 43.92351 * 30 6 5 47 47 H 1.08995 * 110.25626 * 281.68248 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 1.0588 0.5814 5 6 4.6476 1.0510 0.5762 6 6 5.3417 -0.0006 -0.0032 7 6 4.6523 -1.0521 -0.5810 8 6 3.2700 -1.0551 -0.5817 9 6 5.6331 -2.0624 -1.1372 10 6 6.9789 -1.7365 -0.4558 11 1 7.1032 -2.3213 0.4556 12 7 8.0966 -1.9648 -1.3749 13 6 9.3351 -2.1808 -0.8891 14 8 9.5427 -2.0965 0.3060 15 7 10.3435 -2.4902 -1.7280 16 6 10.1342 -2.4901 -3.1824 17 6 11.1983 -1.5902 -3.8290 18 6 12.5883 -2.0606 -3.3945 19 6 12.7168 -1.9417 -1.8742 20 1 12.5518 -0.9066 -1.5749 21 6 14.0967 -2.3739 -1.4500 22 1 14.8123 -2.6989 -2.1908 23 6 14.4456 -2.3547 -0.1163 24 7 13.5744 -1.9586 0.7857 25 14 16.1564 -2.8899 0.4094 26 1 16.9406 -3.2864 -0.7876 27 1 16.8377 -1.7641 1.0974 28 1 16.0506 -4.0452 1.3364 29 6 11.6715 -2.8401 -1.2056 30 6 6.8354 -0.2349 -0.1292 31 1 2.7344 1.8804 1.0339 32 1 5.1906 1.8690 1.0261 33 1 2.7328 -1.8764 -1.0325 34 1 5.7195 -1.9502 -2.2180 35 1 5.3177 -3.0753 -0.8869 36 1 7.9454 -1.9604 -2.3330 37 1 10.2292 -3.5061 -3.5653 38 1 9.1404 -2.1036 -3.4084 39 1 11.0475 -0.5585 -3.5113 40 1 11.1158 -1.6525 -4.9141 41 1 13.3471 -1.4412 -3.8726 42 1 12.7288 -3.1000 -3.6906 43 1 13.8200 -1.9447 1.7240 44 1 11.6923 -2.6846 -0.1268 45 1 11.8882 -3.8848 -1.4283 46 1 7.3386 -0.0027 0.8094 47 1 7.2453 0.3695 -0.9384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869193867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:47 Heat of formation + Delta-G solvation = 7.300927 kcal Electronic energy + Delta-G solvation = -28404.646037 eV Core-core repulsion = 24551.194858 eV Total energy + Delta-G solvation = -3853.451179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62577 -40.82644 -38.66660 -37.95051 -36.70900 -35.34700 -34.11955 -33.13207 -32.58026 -31.42747 -29.54287 -28.50040 -26.98116 -26.01682 -23.96701 -23.38920 -22.93036 -22.07361 -21.47011 -20.44483 -19.30602 -18.84382 -18.16644 -17.50105 -16.96619 -16.58428 -16.53423 -16.00055 -15.74043 -15.24438 -15.16498 -15.07681 -15.03910 -14.60950 -14.51347 -14.28096 -14.14874 -13.93624 -13.78797 -13.76802 -13.70772 -13.48221 -13.24543 -12.89280 -12.66232 -12.58229 -12.36613 -12.23554 -12.19714 -12.02822 -11.81590 -11.78116 -11.58425 -11.15714 -10.90842 -10.77300 -10.48657 -10.12361 -9.84451 -9.53909 -9.20376 -8.06826 -6.23842 -0.22354 0.37963 1.41272 1.43335 1.54854 1.59306 1.82319 1.90100 2.30105 2.44267 2.79667 2.86717 3.06232 3.22595 3.46302 3.62501 3.96677 4.00741 4.10814 4.16184 4.19739 4.21602 4.33974 4.34975 4.64993 4.66052 4.66635 4.77284 4.78325 4.85968 4.88610 4.91497 5.00033 5.11530 5.15481 5.16056 5.23285 5.31443 5.31739 5.33395 5.38855 5.60223 5.60428 5.68013 5.71187 5.83580 5.95058 6.03486 6.23567 6.41040 6.43236 6.89813 7.21557 7.45953 7.76979 8.96098 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023199 B = 0.002146 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.664387 B =13044.085962 C =13720.407860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.284 3.716 3 C -0.043 4.043 4 C -0.060 4.060 5 C -0.112 4.112 6 C -0.062 4.062 7 C -0.097 4.097 8 C -0.047 4.047 9 C -0.073 4.073 10 C 0.162 3.838 11 H 0.076 0.924 12 N -0.723 5.723 13 C 0.695 3.305 14 O -0.637 6.637 15 N -0.628 5.628 16 C 0.110 3.890 17 C -0.126 4.126 18 C -0.105 4.105 19 C 0.038 3.962 20 H -0.015 1.015 21 C -0.534 4.534 22 H 0.061 0.939 23 C 0.009 3.991 24 N -0.913 5.913 25 Si 0.955 3.045 26 H -0.261 1.261 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.143 3.857 30 C -0.100 4.100 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.410 0.590 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.474 2.286 -8.932 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.031 4.031 3 C -0.046 4.046 4 C -0.081 4.081 5 C -0.130 4.130 6 C -0.063 4.063 7 C -0.098 4.098 8 C -0.067 4.067 9 C -0.111 4.111 10 C 0.056 3.944 11 H 0.094 0.906 12 N -0.382 5.382 13 C 0.396 3.604 14 O -0.518 6.518 15 N -0.364 5.364 16 C -0.012 4.012 17 C -0.164 4.164 18 C -0.143 4.143 19 C 0.018 3.982 20 H 0.003 0.997 21 C -0.573 4.573 22 H 0.079 0.921 23 C -0.191 4.191 24 N -0.551 5.551 25 Si 0.781 3.219 26 H -0.185 1.185 27 H -0.210 1.210 28 H -0.209 1.209 29 C 0.020 3.980 30 C -0.138 4.138 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.250 0.750 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.102 2.334 -7.912 22.657 hybrid contribution 1.677 0.010 0.644 1.796 sum -19.425 2.344 -7.269 20.872 Atomic orbital electron populations 1.81295 1.13378 1.09248 1.10426 1.25815 0.92636 0.92359 0.92243 1.15830 0.83249 0.98864 1.06697 1.21244 0.93621 0.96966 0.96228 1.20773 0.93494 0.98738 0.99955 1.20918 0.95263 0.94595 0.95522 1.20314 0.93032 0.96753 0.99691 1.20674 0.92385 0.97154 0.96529 1.21224 0.89318 0.98892 1.01634 1.21351 0.85046 0.94945 0.93041 0.90591 1.45045 1.05139 1.77771 1.10294 1.16190 0.81563 0.77882 0.84747 1.90907 1.83501 1.60811 1.16541 1.47676 1.10512 1.71212 1.06969 1.21962 0.99775 1.01046 0.78425 1.21980 0.94394 0.98716 1.01306 1.21501 0.96634 1.00448 0.95707 1.18914 0.93144 0.93515 0.92596 0.99722 1.21556 0.98754 1.44489 0.92502 0.92088 1.25886 1.00759 0.95250 0.97156 1.70108 1.35846 1.47775 1.01405 0.85544 0.80245 0.77697 0.78404 1.18466 1.21015 1.20902 1.21538 0.79122 0.96208 1.01096 1.21607 0.91980 0.97388 1.02852 0.82941 0.83751 0.83136 0.86835 0.87988 0.74991 0.90159 0.87752 0.93241 0.87875 0.93295 0.92445 0.93235 0.90647 0.94815 0.91716 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.33 18.54 19.00 0.35 -9.97 16 2 C 0.28 4.75 15.33 88.33 1.35 6.10 16 3 C -0.04 -0.55 5.73 -21.39 -0.12 -0.67 16 4 C -0.06 -0.68 9.76 22.51 0.22 -0.46 16 5 C -0.11 -1.45 10.02 22.27 0.22 -1.23 16 6 C -0.06 -0.97 6.15 -19.40 -0.12 -1.09 16 7 C -0.10 -1.26 6.12 -19.61 -0.12 -1.38 16 8 C -0.05 -0.53 9.75 22.57 0.22 -0.31 16 9 C -0.07 -0.86 6.48 30.52 0.20 -0.67 16 10 C 0.16 3.41 3.35 45.90 0.15 3.56 16 11 H 0.08 2.04 7.70 -2.39 -0.02 2.02 16 12 N -0.72 -17.43 5.06 -453.49 -2.30 -19.73 16 13 C 0.69 26.37 8.29 179.06 1.48 27.86 16 14 O -0.64 -31.70 15.50 -4.01 -0.06 -31.76 16 15 N -0.63 -23.62 2.97 -836.03 -2.48 -26.10 16 16 C 0.11 2.74 6.42 86.51 0.56 3.30 16 17 C -0.13 -3.40 6.10 30.82 0.19 -3.21 16 18 C -0.11 -3.90 5.11 30.62 0.16 -3.74 16 19 C 0.04 1.87 2.25 -11.46 -0.03 1.84 16 20 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 21 C -0.53 -29.16 8.56 25.60 0.22 -28.94 16 22 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 23 C 0.01 0.50 5.30 84.65 0.45 0.95 16 24 N -0.91 -55.33 11.39 21.45 0.24 -55.09 16 25 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 C 0.14 7.00 5.41 86.36 0.47 7.46 16 30 C -0.10 -2.05 6.52 30.63 0.20 -1.85 16 31 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.11 0.83 7.79 -2.38 -0.02 0.81 16 35 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.41 6.66 5.88 -92.71 -0.55 6.11 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 1.68 5.64 -2.39 -0.01 1.67 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.08 4.47 5.11 -2.38 -0.01 4.46 16 45 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.09 1.83 8.08 -2.39 -0.02 1.82 16 Total: -1.00 -77.88 384.67 3.94 -73.94 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.46 Total: 15.09 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.70 Total: 7.53 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -4.18 Total: -110.90 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.06 Total: -31.76 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -77.88 3.94 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869193867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.244 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds