Wall clock time and date at job start Tue Mar 31 2020 22:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39651 * 120.18750 * 169.91187 * 3 2 1 5 5 C 1.37799 * 119.77567 * 179.97438 * 4 3 2 6 6 C 1.38668 * 120.42134 * 359.97394 * 5 4 3 7 7 C 1.38382 * 120.08849 * 0.02717 * 6 5 4 8 8 C 1.38223 * 120.00246 * 359.97438 * 7 6 5 9 9 C 1.51394 * 109.74103 * 180.02562 * 7 6 5 10 10 C 1.54337 * 105.17498 * 342.78047 * 9 7 6 11 11 H 1.08992 * 110.98438 * 268.10587 * 10 9 7 12 12 N 1.46497 * 110.81668 * 144.64570 * 10 9 7 13 13 C 1.34781 * 120.00081 * 160.56045 * 12 10 9 14 14 O 1.21587 * 119.99960 * 4.97696 * 13 12 10 15 15 N 1.34771 * 120.00049 * 184.97963 * 13 12 10 16 16 C 1.46928 * 120.63182 * 354.77045 * 15 13 12 17 17 C 1.53192 * 108.77750 * 233.58667 * 16 15 13 18 18 C 1.53046 * 109.31312 * 305.36514 * 17 16 15 19 19 C 1.53043 * 109.53527 * 61.36457 * 18 17 16 20 20 H 1.08998 * 109.49726 * 58.58400 * 19 18 17 21 21 C 1.50698 * 109.49433 * 178.68577 * 19 18 17 22 22 H 1.07991 * 120.00386 * 359.97438 * 21 19 18 23 23 C 1.37879 * 119.99868 * 180.02562 * 21 19 18 24 24 N 1.31515 * 119.99883 * 359.97438 * 23 21 19 25 25 Si 1.86798 * 120.00042 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47489 * 59.99631 * 25 23 21 27 27 H 1.48502 * 109.47135 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46832 * 299.99586 * 25 23 21 29 29 C 1.46924 * 120.63169 * 174.75090 * 15 13 12 30 30 C 1.51425 * 130.20897 * 180.02562 * 6 5 4 31 31 H 1.07995 * 120.11088 * 359.94963 * 4 3 2 32 32 H 1.07997 * 119.78391 * 179.97438 * 5 4 3 33 33 H 1.08006 * 119.95147 * 180.02562 * 8 7 6 34 34 H 1.09005 * 110.29942 * 223.85712 * 9 7 6 35 35 H 1.08998 * 110.30662 * 101.70587 * 9 7 6 36 36 H 0.97007 * 120.00032 * 340.54849 * 12 10 9 37 37 H 1.09007 * 109.58233 * 113.79963 * 16 15 13 38 38 H 1.08996 * 109.70524 * 353.44726 * 16 15 13 39 39 H 1.09000 * 109.49961 * 185.41366 * 17 16 15 40 40 H 1.08996 * 109.49651 * 65.31621 * 17 16 15 41 41 H 1.09003 * 109.45808 * 301.34856 * 18 17 16 42 42 H 1.08998 * 109.44904 * 181.37823 * 18 17 16 43 43 H 0.97002 * 119.99938 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.58472 * 6.62542 * 29 15 13 45 45 H 1.09006 * 109.58693 * 246.20194 * 29 15 13 46 46 H 1.08996 * 110.30489 * 78.27562 * 30 6 5 47 47 H 1.08998 * 110.37843 * 316.16723 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 1.1894 -0.2114 5 6 4.6476 1.1804 -0.2092 6 6 5.3417 -0.0014 0.0022 7 6 4.6524 -1.1827 0.2123 8 6 3.2701 -1.1858 0.2122 9 6 5.6332 -2.3178 0.4163 10 6 6.9793 -1.7905 -0.1241 11 1 7.1062 -2.0493 -1.1752 12 7 8.0966 -2.3010 0.6741 13 6 9.3452 -2.2962 0.1664 14 8 9.5591 -1.7863 -0.9164 15 7 10.3564 -2.8567 0.8590 16 6 10.1374 -3.3746 2.2164 17 6 11.1662 -2.7406 3.1579 18 6 12.5737 -2.9881 2.6102 19 6 12.7099 -2.3325 1.2340 20 1 12.5145 -1.2636 1.3193 21 6 14.1060 -2.5492 0.7098 22 1 14.8249 -3.0990 1.2990 23 6 14.4660 -2.0445 -0.5218 24 7 13.5907 -1.3744 -1.2392 25 14 16.1963 -2.3136 -1.1721 26 1 16.4598 -3.7702 -1.2904 27 1 16.3279 -1.6772 -2.5073 28 1 17.1767 -1.7077 -0.2356 29 6 11.6986 -2.9619 0.2707 30 6 6.8321 -0.2645 0.0504 31 1 2.7342 2.1126 -0.3766 32 1 5.1904 2.0995 -0.3731 33 1 2.7330 -2.1083 0.3767 34 1 5.3176 -3.1961 -0.1468 35 1 5.7191 -2.5577 1.4761 36 1 7.9379 -2.6423 1.5682 37 1 10.2591 -4.4578 2.2182 38 1 9.1314 -3.1194 2.5493 39 1 11.0773 -3.1877 4.1481 40 1 10.9854 -1.6679 3.2251 41 1 12.7448 -4.0608 2.5200 42 1 13.3088 -2.5591 3.2912 43 1 13.8438 -1.0197 -2.1058 44 1 11.7227 -2.4323 -0.6816 45 1 11.9476 -4.0115 0.1139 46 1 7.2403 0.0469 1.0120 47 1 7.3365 0.2595 -0.7614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869193869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:56 Heat of formation + Delta-G solvation = 25.677889 kcal Electronic energy + Delta-G solvation = -28415.366421 eV Core-core repulsion = 24562.712126 eV Total energy + Delta-G solvation = -3852.654295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.76483 -39.61880 -37.57911 -36.78133 -35.73686 -33.64678 -32.74672 -31.98127 -31.67272 -29.78979 -28.65155 -27.82786 -25.08808 -24.61314 -23.12080 -22.27768 -21.85362 -21.15381 -20.08955 -19.04494 -18.43812 -17.52400 -16.49857 -16.25139 -16.10053 -15.77469 -14.80329 -14.66455 -14.58974 -14.46792 -14.16639 -13.83211 -13.73249 -13.72694 -13.34872 -13.12708 -12.98845 -12.98720 -12.92317 -12.62344 -12.50214 -12.15832 -11.95642 -11.82860 -11.56385 -11.30239 -11.18300 -10.98269 -10.90460 -10.53569 -10.42945 -10.23683 -9.88877 -9.48742 -9.27783 -9.10376 -8.96578 -8.92797 -8.84543 -8.41906 -7.67788 -5.98160 -4.07331 0.41035 0.93237 2.31447 2.58368 3.08539 3.32589 3.38461 3.39550 3.46621 3.49340 3.74579 4.14275 4.20059 4.40703 4.46437 4.51959 4.70543 4.88934 4.90249 4.96053 5.22661 5.24961 5.28407 5.31479 5.46746 5.48369 5.55507 5.58792 5.65178 5.81739 5.89184 5.90098 5.94924 5.98978 6.13801 6.22376 6.29344 6.43061 6.56703 6.64848 6.74920 6.78936 6.97462 7.02194 7.13465 7.32627 7.47051 7.73607 7.92221 8.05733 8.40845 8.53965 8.95978 9.20556 9.58111 11.06672 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.002155 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.525670 B =12988.360319 C =13689.059027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.260 3.740 3 C -0.038 4.038 4 C -0.067 4.067 5 C -0.108 4.108 6 C -0.050 4.050 7 C -0.098 4.098 8 C -0.054 4.054 9 C -0.087 4.087 10 C 0.171 3.829 11 H 0.101 0.899 12 N -0.750 5.750 13 C 0.700 3.300 14 O -0.578 6.578 15 N -0.622 5.622 16 C 0.116 3.884 17 C -0.133 4.133 18 C -0.110 4.110 19 C 0.040 3.960 20 H 0.029 0.971 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.878 5.878 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.278 1.278 29 C 0.129 3.871 30 C -0.104 4.104 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.391 0.609 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.039 0.961 46 H 0.091 0.909 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.051 -0.114 6.295 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.055 4.055 3 C -0.041 4.041 4 C -0.088 4.088 5 C -0.126 4.126 6 C -0.052 4.052 7 C -0.098 4.098 8 C -0.075 4.075 9 C -0.125 4.125 10 C 0.064 3.936 11 H 0.119 0.881 12 N -0.409 5.409 13 C 0.402 3.598 14 O -0.455 6.455 15 N -0.358 5.358 16 C -0.009 4.009 17 C -0.172 4.172 18 C -0.148 4.148 19 C 0.021 3.979 20 H 0.047 0.953 21 C -0.561 4.561 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.515 5.515 25 Si 0.719 3.281 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.203 1.203 29 C 0.008 3.992 30 C -0.142 4.142 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.228 0.772 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.057 0.943 46 H 0.109 0.891 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.633 0.324 5.278 20.333 hybrid contribution 1.230 -0.225 0.182 1.264 sum -18.403 0.099 5.460 19.196 Atomic orbital electron populations 1.81266 1.12086 1.07367 1.09178 1.25690 0.92608 0.93725 0.93526 1.15765 0.84145 0.95253 1.08984 1.21057 0.93922 0.96651 0.97130 1.20623 0.93161 0.98038 1.00810 1.20955 0.96535 0.93118 0.94560 1.20326 0.92763 0.96066 1.00660 1.20535 0.92763 0.96818 0.97363 1.21305 0.92182 0.96458 1.02505 1.21225 0.83986 0.91639 0.96739 0.88083 1.45357 1.06141 1.70027 1.19383 1.15950 0.80150 0.79471 0.84244 1.90942 1.82572 1.50158 1.21837 1.47796 1.11104 1.61752 1.15166 1.21488 0.97753 0.98154 0.83475 1.21947 0.97270 1.00682 0.97288 1.21617 0.93414 1.00342 0.99392 1.18975 0.94113 0.95664 0.89187 0.95332 1.21031 0.96184 1.35823 1.03069 0.92477 1.25055 0.97154 0.94825 0.96989 1.69887 1.33834 1.35369 1.12443 0.86669 0.84925 0.78380 0.78081 1.20279 1.21281 1.20329 1.22195 0.76010 0.99524 1.01474 1.21698 0.90517 0.97813 1.04204 0.84822 0.84818 0.85133 0.89461 0.89293 0.77191 0.92156 0.92170 0.92352 0.92194 0.93213 0.93092 0.92611 0.85866 0.94262 0.89058 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.93 18.54 41.84 0.78 -4.15 16 2 C 0.26 2.41 15.33 -22.47 -0.34 2.07 16 3 C -0.04 -0.29 5.73 -106.98 -0.61 -0.90 16 4 C -0.07 -0.46 9.76 -39.22 -0.38 -0.84 16 5 C -0.11 -0.80 10.02 -39.58 -0.40 -1.20 16 6 C -0.05 -0.43 6.14 -104.05 -0.64 -1.07 16 7 C -0.10 -0.76 6.12 -104.23 -0.64 -1.40 16 8 C -0.05 -0.39 9.75 -39.12 -0.38 -0.77 16 9 C -0.09 -0.64 6.47 -26.84 -0.17 -0.81 16 10 C 0.17 1.85 3.32 -66.55 -0.22 1.63 16 11 H 0.10 1.29 7.78 -51.93 -0.40 0.89 16 12 N -0.75 -9.54 5.08 -57.33 -0.29 -9.83 16 13 C 0.70 13.05 8.29 -86.92 -0.72 12.33 16 14 O -0.58 -13.51 15.54 5.29 0.08 -13.43 16 15 N -0.62 -11.71 2.97 -178.50 -0.53 -12.24 16 16 C 0.12 1.63 6.38 -3.71 -0.02 1.60 16 17 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 18 C -0.11 -2.09 5.11 -26.69 -0.14 -2.23 16 19 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.52 -13.87 8.56 -34.44 -0.29 -14.16 16 22 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.22 11.40 55.43 0.63 -24.58 16 25 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.13 3.01 5.41 -3.71 -0.02 2.99 16 30 C -0.10 -1.08 6.49 -26.84 -0.17 -1.26 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.53 7.78 -51.93 -0.40 0.13 16 36 H 0.39 3.87 5.86 -40.82 -0.24 3.63 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.63 5.66 -51.93 -0.29 0.34 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.12 3.41 5.12 -51.93 -0.27 3.15 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -32.39 384.69 -10.82 -43.21 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.64 Total: 3.10 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -5.62 Total: -3.81 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.59 Total: -50.80 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.39 -10.82 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869193869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.890 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds